mRNA_P-wetherbeei_contig13088.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13088.1.1
Unique NamemRNA_P-wetherbeei_contig13088.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: A0A6H5JP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP10_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.410e-42
Identity = 86/144 (59.72%), Postives = 101/144 (70.14%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARE--CRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD RMQMLVA EKEPITPFI++V+ LY  + VS+ILV+GG GDYFEVADTV+ MDCY P DVTA A RIA +             H  F+ AG     AR PQ  ++ + GKV+AR KDK+QYG+VDIDL  VEQLVE
Sbjct:  516 ATNFMIRDVRMQMLVAKEKEPITPFISRVRALYETMSVSSILVIGGCGDYFEVADTVIMMDCYVPKDVTAEAKRIAADETVGXXXXXXVKRHKTFHFAGG----ARVPQARTYASRGKVVARSKDKIQYGDVDIDLGGVEQLVE 655          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: W7TBB4_9STRA (ABC transporter, ATPase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBB4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.330e-40
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD RMQ+LV+ +KEPITPF+AKV+ LY +  +S++LV+GGAGDYFEVADTV+ MD Y P D T AA  IA +        + + T F+    G  + R P  AS  T+GKV+ARGKDKLQYGE D+DLS VEQLVE
Sbjct:  125 ATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYS------SSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: W7T242_9STRA (ABC transporter, ATPase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T242_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.840e-40
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD RMQ+LV+ +KEPITPF+AKV+ LY +  +S++LV+GGAGDYFEVADTV+ MD Y P D T AA  IA +        + + T F+    G  + R P  AS  T+GKV+ARGKDKLQYGE D+DLS VEQLVE
Sbjct:  142 ATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYS------SSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 277          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: A0A484EHU5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHU5_BRELC)

HSP 1 Score: 144 bits (363), Expect = 1.380e-37
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD +MQ LVA +KEPITPFI+KV+ LY +  VS++LV+GGAGDYF VAD V+ MD Y+P DVT  A RIA E R +            +A  G   +R P    F  +GKV++RG DK+QYGEVD+DLSAVEQ+VE
Sbjct:  420 ATNFMIRDGKMQQLVAKDKEPITPFISKVQALYRQHNVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTVEAKRIASEHREVS----------QIADFGNLQSRIPSRHGFEINGKVVSRGLDKIQYGEVDLDLSAVEQIVE 551          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: D7FUV6_ECTSI (Predicted ATPase of the ABC class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.740e-37
Identity = 74/125 (59.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   52 EKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            EKEPITPFI++V+ LY  + VS+ILV+GG GDYFEVADTV+ MDCY P DVTA A RIA +    G      H  F+LAG     AR PQ  ++ + GKV+AR KDK+QYG+VDIDL  VEQLVE
Sbjct:   68 EKEPITPFISRVRALYETMSVSSILVIGGCGDYFEVADTVIMMDCYVPKDVTAEAKRIAADETVGGGGGVKRHKTFHLAGG----ARVPQARTYASRGKVVARSKDKIQYGDVDIDLGGVEQLVE 188          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: A0A3R7IFS1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IFS1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.850e-37
Identity = 80/143 (55.94%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYL-AGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD +MQ LVA +KEPITPFI+KV+ LY +  VS++LV+GGAGDYF VAD V+ MD Y+P DVTA A +IA E           H E    A  GG   R P +  F  +GK+++RG DK+QYGEVD+DLSAVEQ+VE
Sbjct:  418 ATNFMIRDWKMQQLVAKDKEPITPFISKVRALYEQCGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTAEAKKIASE-----------HGEIRQDATFGGFKVRIPLSRGFEVNGKIVSRGVDKIQYGEVDLDLSAVEQIVE 549          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: A0A7S2RPE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPE7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.630e-36
Identity = 77/146 (52.74%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTA----SFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD RMQ LVA EKEPITPFI +V+ LY    VS+ILV+GGAGDYF+V DTV+ MD Y P+D TA A  IA++        +P+  E     S  P   +PQ      SF+  GK+ +RG  K QYG++D+DLS VEQLVE
Sbjct:    4 ATNFMIRDIRMQALVAKEKEPITPFITRVRTLYESHGVSSILVIGGAGDYFDVCDTVIMMDSYLPSDRTADAKAIAQQFASSSSSQSPAAVEGGAVSS--PFHYQPQRVPVAQSFSCTGKIASRGLGKFQYGDLDVDLSGVEQLVE 147          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: H3G7G9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7G9_PHYRM)

HSP 1 Score: 139 bits (350), Expect = 3.730e-36
Identity = 79/143 (55.24%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGP-AARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD +MQ LVA +KEPITPFI+KV+ LY +  VS++LV+GGAGDYF VAD V+ MD Y+P DVTA A +IA E           H E     + G   AR P +  F  +GKV++RG  K+QYGEVD+DLSAVEQ+VE
Sbjct:  366 ATNFMIRDWKMQQLVAKDKEPITPFISKVRALYTQRGVSSVLVIGGAGDYFSVADNVIMMDSYEPRDVTAEAKKIASE-----------HGEIRQDATFGEFKARIPLSRGFEVNGKVVSRGIGKIQYGEVDLDLSAVEQIVE 497          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: A0A835YTL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.410e-35
Identity = 90/184 (48.91%), Postives = 103/184 (55.98%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAK----------------------VKPLYARLRVSTILVVGGAGDYFE--------------------VADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRDARMQ LVAP+KEPITPFI+K                      V+ LYA   VS++LV+GGAGDYFE                    VADTVV MDCY P DVTA A  I  E   LG       +   L   G  + R P  ASFTT GKV+ARGKDK+QYG+VDI+L+ VEQL E
Sbjct:  455 ATNFMIRDARMQALVAPDKEPITPFISKASARAHGRARCGLLRPGQRARPVRALYADKGVSSVLVIGGAGDYFEGKLFLVSHAFPKSVGVTFYQVADTVVMMDCYAPRDVTAQARAIVTESLSLG-----HKSVIQLPEFGQVSQRTPSAASFTTHGKVVARGKDKIQYGDVDIELAPVEQLCE 633          
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Match: K3WBG0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBG0_GLOUD)

HSP 1 Score: 137 bits (345), Expect = 4.880e-35
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 ATNLMIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVADTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGS-GGPAARRPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE 426
            ATN MIRD +MQ LVA EKEPITPFI+KV+ LY +  VS++LV+GGAGDYF VAD V+ MD Y+P DVT  A +IA++           H E       GG  AR P    F  +GKV+ARG  ++QYGEVD+DL+AVEQLVE
Sbjct:  432 ATNFMIRDWKMQQLVAKEKEPITPFISKVRALYNQNGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTKEAKQIAKQ-----------HGEIRQDDDFGGFTARIPLPRGFEVNGKVVARGLGRIQYGEVDLDLAAVEQLVE 563          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP10_9PHAE8.410e-4259.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TBB4_9STRA1.330e-4057.75ABC transporter, ATPase, putative n=1 Tax=Nannochl... [more]
W7T242_9STRA1.840e-4057.75ABC transporter, ATPase, putative n=1 Tax=Nannochl... [more]
A0A484EHU5_BRELC1.380e-3755.63Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
D7FUV6_ECTSI2.740e-3759.20Predicted ATPase of the ABC class n=1 Tax=Ectocarp... [more]
A0A3R7IFS1_9STRA6.850e-3755.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S2RPE7_9STRA1.630e-3652.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
H3G7G9_PHYRM3.730e-3655.24Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A835YTL6_9STRA1.410e-3548.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WBG0_GLOUD4.880e-3555.24Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13088contigP-wetherbeei_contig13088:782..1830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FUV6
PFAMsABC_ATPase
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.86e-38
EggNOG OGsCOG3044@1|root,2QT9W@2759|Eukaryota
DescriptionPredicted ATPase of the ABC class
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.4111977-CDS-P-wetherbeei_contig13088:781..8201683185973.4111977-CDS-P-wetherbeei_contig13088:781..820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13088 782..820 -
1683185973.419325-CDS-P-wetherbeei_contig13088:1174..14771683185973.419325-CDS-P-wetherbeei_contig13088:1174..1477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13088 1175..1477 -
1683185973.4264657-CDS-P-wetherbeei_contig13088:1746..18181683185973.4264657-CDS-P-wetherbeei_contig13088:1746..1818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13088 1747..1818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.437573-UTR-P-wetherbeei_contig13088:1818..18301683185973.437573-UTR-P-wetherbeei_contig13088:1818..1830Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13088 1819..1830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13088.1.1prot_P-wetherbeei_contig13088.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13088 782..1818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13088.1.1

>prot_P-wetherbeei_contig13088.1.1 ID=prot_P-wetherbeei_contig13088.1.1|Name=mRNA_P-wetherbeei_contig13088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MIRDARMQMLVAPEKEPITPFIAKVKPLYARLRVSTILVVGGAGDYFEVA
DTVVAMDCYKPADVTAAAHRIARECRPLGPPPAPSHTEFYLAGSGGPAAR
RPQTASFTTDGKVMARGKDKLQYGEVDIDLSAVEQLVE
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mRNA from alignment at P-wetherbeei_contig13088:782..1830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13088.1.1 ID=mRNA_P-wetherbeei_contig13088.1.1|Name=mRNA_P-wetherbeei_contig13088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1049bp|location=Sequence derived from alignment at P-wetherbeei_contig13088:782..1830- (Phaeothamnion wetherbeei SAG_119_79)
GCGACGAACCTCATGATTCGAGACGCCCGAATGCAGATGCTCGTCGCCCC CGAGAAGGAGCCCATCACGCCGTTCATCGCAAAGGTGTGGGAGAACCGTC TTGTTGCTTTTGGATGGCAGCCGACTGCAGGCCCCCGGTTCCTCTTTTTC AGCTTTACTTTCAAAGACTTTGGCATTTATATACCCTGCCTTTGCTGGTG GGATCCCAATAGTAGTCTGCGTCGTTGCTGTCGCTGCCAAATTCGCCACG ATTCTGTGTCGCCGGCCCCGCACCCATCACCAGCACCGTCACCAGCACCG TCACCCGCCCCGTCGGGTACCGCGATCGCCATCCTCCCCACTCGCCCCAA CAGGTCAAGCCGCTGTACGCGCGACTTCGCGTGTCTACCATCCTCGTCGT CGGCGGCGCCGGCGACTACTTCGAAGTTGCCGACACCGTCGTGGCGATGG ACTGCTATAAGCCCGCTGACGTCACCGCCGCCGCCCACCGCATCGCTCGC GAGTGCCGGCCGCTGGGCCCGCCGCCGGCGCCATCCCATACGGAATTCTA TTTAGCGGGATCCGGCGGGCCAGCGGCGCGGCGGCCGCAGACGGCGTCAT TCACGACGGACGGCAAGGTGATGGCGCGGGGCAAAGACAAGCTGCAATAC GGCGAGGTGAGTGTGTGGTTTGAGGAAGCAGGAAATGCAGGGGCTGGCGA GATTGATTCGAGTGCGCTGGATCAGAATGCTGAGCATGAAGAAGCTGTAG ACCAGTGGTGGCCAAAGAGGTTGCCACTGGTGGACCAGTTACCACCCATT CTGGCGAAAAACTGAAGATGCTTTTATCAATCCGCTGTGCCGCCATTGCC ACCATCCCCATATTTCCATTGCTCCTCACGCTTCCGCTATTGCGGCGGCG GTCTTTGATTAATGCTCCCCTTCGCCGCGCCGCTGCCACCGTGGCCGCCG CCGCCGTCGCTGCTGCCGTGCCGCGTCTTCTCTTCGGTCTCTTTCCCCGT CATGCACCAGGTCGACATCGATCTTTCTGCGGTCGAGCAGCTCGTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13088:782..1830-

>mRNA_P-wetherbeei_contig13088.1.1 ID=mRNA_P-wetherbeei_contig13088.1.1|Name=mRNA_P-wetherbeei_contig13088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig13088:782..1830- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCGAGACGCCCGAATGCAGATGCTCGTCGCCCCCGAGAAGGAGCC
CATCACGCCGTTCATCGCAAAGGTCAAGCCGCTGTACGCGCGACTTCGCG
TGTCTACCATCCTCGTCGTCGGCGGCGCCGGCGACTACTTCGAAGTTGCC
GACACCGTCGTGGCGATGGACTGCTATAAGCCCGCTGACGTCACCGCCGC
CGCCCACCGCATCGCTCGCGAGTGCCGGCCGCTGGGCCCGCCGCCGGCGC
CATCCCATACGGAATTCTATTTAGCGGGATCCGGCGGGCCAGCGGCGCGG
CGGCCGCAGACGGCGTCATTCACGACGGACGGCAAGGTGATGGCGCGGGG
CAAAGACAAGCTGCAATACGGCGAGGTCGACATCGATCTTTCTGCGGTCG
AGCAGCTCGTGGAG
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