mRNA_P-wetherbeei_contig1308.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.750e-33 Identity = 74/151 (49.01%), Postives = 88/151 (58.28%), Query Frame = 1 Query: 7 QIGWVR--------------ASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 +IGW R ASRTD GVHAAK V+ AKLLVDQT+F G + L+ INA LPPDLRVFSVCKVPK FR R EC+WR YEYYLP +L + + A+F LLRL+ GTHSFHNF+++K Sbjct: 67 KIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD-----------------------DKATAKFGELLRLFEGTHSFHNFISMK 194
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI) HSP 1 Score: 124 bits (311), Expect = 3.050e-29 Identity = 68/137 (49.64%), Postives = 83/137 (60.58%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 +IGW R SRTD GVHA+K V AAKLL+ Q F G S+ + +N +LP D+R FSV KVPKSFR R ECT R Y YYLP E+L DDE+ L +FR LL+L+VGTHSFHN+ + K Sbjct: 81 KIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLP------------DDEA-----------LGKFRELLKLFVGTHSFHNYASTK 194
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.440e-29 Identity = 65/137 (47.45%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 +IGW R SRTD GVHA+K V AAKLL+ Q F G S+ + +N LP D+R FSV KVPKSFR R ECT R Y YYLP E+L + + +L +FR LL+L+VGTHSFHN+ + K Sbjct: 160 KIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPD-----------------------DGSLGKFRELLKLFVGTHSFHNYASTK 273
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A7S2NDW7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NDW7_9DINO) HSP 1 Score: 100 bits (250), Expect = 7.200e-23 Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 +IGW R+SRTDAGV A + +++A+ LV + F +N ELP D+R F +VP+SF A+R C+WR YEY LP EM PA + G ++D E+ +A +A +R + G HS+HNF V+ Sbjct: 62 KIGWSRSSRTDAGVSAVRLIISARFLVSEDGFDAADHHSATVEELNRELPHDIRCFGAVRVPRSFDAKRSCSWREYEYLLPVEMCR---PAT--------QDGAAPIAD-EALVASVQAAMRRFEGNHSYHNFSRVR 186
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: W7U6V3_9STRA (Pseudouridylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6V3_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.360e-21 Identity = 73/184 (39.67%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKL--LVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVKKARKDRERGREERAAAMAAXXXXXXVTGSDAAAVVAGIAIAVGED 552 +IGW R SRTD GVHAA+NV++AKL VD + SE + INA LP D+RV S K KSFR R ++R Y Y +P E+L P T + DES +E+ +ARF LL + GTH+FHNF +K +D R + +A + A G + A+ AG + GED Sbjct: 175 KIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLR---PFPGTGRAVADES-------SEALIARFCDLLVRFQGTHNFHNFTKIKS--RDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGED 346
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A2D4BJ04_PYTIN (PseudoU_synth_1 domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ04_PYTIN) HSP 1 Score: 99.0 bits (245), Expect = 1.890e-20 Identity = 54/139 (38.85%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRD--GASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 +I W R+SRTD GVHA V +AKLL+D+ G L ++NA+LPP +R+FS +V K F ARR C R YEY+LP L+ ++ + + DD+ + D + + F + LR Y G H FHNF + Sbjct: 99 KIDWSRSSRTDKGVHAGCIVFSAKLLIDEEAAVDPVTGRVNSLVESLNAQLPPTIRIFSATRVNKRFSARRNCVLREYEYFLP---LSFLEQSFLATALNDDDDATRTDIDIDEAVNEFLSALREYEGIHDFHNFTKAR 234
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A250X951_9CHLO (PseudoU_synth_1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X951_9CHLO) HSP 1 Score: 98.2 bits (243), Expect = 3.780e-20 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRT--INAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVK 417 ++ W RASRTD GVH+ V++ +LLV ++ +G E L INA LPP +RVF+V K K F AR R YEYYLP ML + D + H V +A FR +LRL++G+H FHNF +K Sbjct: 70 KVKWARASRTDKGVHSLGTVMSMRLLVHDNRYSPEGDPEGLTHADLINAHLPPTIRVFTVQKTNKKFNARHLALSRIYEYYLPVSMLE------LKMDGSE-----HDVE----RIATFRRILRLFLGSHPFHNFTKMK 193
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A2P6TFJ8_CHLSO (tRNA pseudouridine synthase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFJ8_CHLSO) HSP 1 Score: 94.4 bits (233), Expect = 8.870e-19 Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARF---RALLRLYVGTHSFHNFVTVKKARKD------RERGREER 456 ++ W R+SRTD VH+ V+A K+ V+ F D + L INA LPP++RVFS+ +V KS+ AR EC RCY YYLP +L G + +E+ AR R + GTH FHN+ + R+ R +GR +R Sbjct: 655 KVSWSRSSRTDKSVHSLATVVAMKMEVEPESFDTDPEGQALAAAINASLPPEVRVFSIQRVSKSWNARSECIRRCYNYYLPASIL------------------GLKLDGSEADAARLELLRTAWERFQGTHPFHNYTKRRLYREPAAASDGRRKGRRDR 795
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A2P6VG62_9CHLO (tRNA pseudouridine synthase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG62_9CHLO) HSP 1 Score: 92.8 bits (229), Expect = 2.020e-18 Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVSDTESTLARFRALLRLYVGTHSFHNFVTVKKARKDRERGREER 456 ++GW R+SRTD VH+ V+ K+ V F D +EL +N+ LPP++RVFS+ +V KS+ AR EC R Y Y+LP L + D G+ ++ + +A RA + GTH FHN+ + R+ R R R Sbjct: 35 KVGWSRSSRTDKSVHSLSTVIGMKMEVPVEAFDADPEGQELAAVVNSHLPPEVRVFSIQRVSKSWNARSECIRRTYNYWLPASALG------LALDGGEADA---------ARMALLRAAWERFQGTHPFHNYTKRRLYREPAGRDRANR 169
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Match: A0A6G0WJY3_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJY3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.380e-18 Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 7 QIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAELPPDLRVFSVCKVPKSFRARRECTWRCYEYYLPWEMLANVDPAVVTADSGDDESGGHSVS-DTES------------TLARFRALLRLYVGTHSFHNFVT 411 +IGW RA+RTD GVHAA ++ AKL ++ DG E R+ +N LPPD++V + V K+F A+ C R YEY P + A P ++ + S+ D E+ TLA+ R L+L+VGTH+FHN+ + Sbjct: 117 KIGWNRAARTDKGVHAAGQLVCAKLCIE------DGKEVEFRQKVNGFLPPDIQVLDIVLVTKNFNAKNSCDRRTYEYLTPTFVFA---PKTASSTPPEGAVDLESIKVDPEAWAKQKEYRIDNDTLAKLRQTLKLFVGTHNFHNYTS 255 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1308.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1308.4.1 >prot_P-wetherbeei_contig1308.4.1 ID=prot_P-wetherbeei_contig1308.4.1|Name=mRNA_P-wetherbeei_contig1308.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp HPQIGWVRASRTDAGVHAAKNVLAAKLLVDQTKFGRDGASEELRRTINAEback to top mRNA from alignment at P-wetherbeei_contig1308:6229..7399- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1308.4.1 ID=mRNA_P-wetherbeei_contig1308.4.1|Name=mRNA_P-wetherbeei_contig1308.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1171bp|location=Sequence derived from alignment at P-wetherbeei_contig1308:6229..7399- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1308:6229..7399- >mRNA_P-wetherbeei_contig1308.4.1 ID=mRNA_P-wetherbeei_contig1308.4.1|Name=mRNA_P-wetherbeei_contig1308.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig1308:6229..7399- (Phaeothamnion wetherbeei SAG_119_79)back to top |