mRNA_P-wetherbeei_contig13075.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13075.1.1
Unique NamemRNA_P-wetherbeei_contig13075.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A7S2BQ57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ57_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.080e-24
Identity = 45/80 (56.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  166 LVFTLAQVFLFCTDVVRH----HCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLL 393
            LV T+AQV LFC DV       HCRRET+LGTSLA++ G WLG+AS Y+ ++++L SR+ L++S+AVTG+G+ GWC+GL+
Sbjct:    1 LVLTMAQVLLFCIDVTADPNHGHCRRETLLGTSLALSTGAWLGSASTYHVLTVILGSRLSLLKSLAVTGHGIIGWCIGLV 80          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A7M5X0W9_9CNID (Protein YIPF n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X0W9_9CNID)

HSP 1 Score: 87.8 bits (216), Expect = 1.660e-18
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGMQ-RDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCV 384
            ++D L   F ++  D L RL  SLVP    +      +L+GP+M+VFTL  + LF      H  +  T++GT++ V FG WLG +SFYY ++ +  S + L+Q V++TGY LF  C+
Sbjct:   33 NIDNLRPYFDVEPRDVLVRLGKSLVPIKPVKPQTVEGELYGPIMVVFTLIALLLFSMKHSGHTVQEGTLMGTAIGVCFGYWLGGSSFYYFIAYICNSHITLLQIVSLTGYALFAHCI 149          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A8B7DF87_HYDVU (Protein YIPF n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DF87_HYDVU)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-18
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGMQ-RDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLL 393
            ++D L   F ++ ++ L RL  SLVP    +      +L+GP+M+VFTL  + LF      H  +  T++GT++ V FG WLG + F+Y +S L  + + L+Q V++TGY LF  C+ L+
Sbjct:   25 NIDTLRPYFDVEPKEVLVRLSQSLVPRKTTKPQTVAGELYGPMMVVFTLVALLLFSMKFSGHTVQEGTLMGTAIGVCFGYWLGGSIFFYFLSYLCNAHITLLQIVSLTGYALFSHCIYLI 144          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A7I8VYZ8_9ANNE (Protein YIPF3 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VYZ8_9ANNE)

HSP 1 Score: 87.8 bits (216), Expect = 6.160e-18
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGMQR-DVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGL 390
            S+D L   F ++  +  +RL  SLVP      +    +L+GPLMLVFTL  + LF      H  +  T++GT+ AV FG W+GT+SF + +S +  SR++LVQ +++ GY LF  C+ L
Sbjct:  107 SIDILRPYFDVEPYEVRKRLLYSLVPSKPTTQIKLMRELYGPLMLVFTLIAILLFQMKTSDHTVQEGTLMGTAFAVCFGYWIGTSSFVWVLSYVCNSRIQLVQIMSMIGYALFAHCLVL 225          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: UPI001F04D167 (protein YIPF3-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04D167)

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-17
Identity = 45/142 (31.69%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    7 YVWSGVRKAL--------SLDRLAELFSLDQEDALRRLWGSLVPGMQRD---VAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS 399
            YVW+  ++          ++D L   F ++  +   RL  S++P + +    V    +L+GPLMLVFTL  + LF      H  +  T++GT+ A+ FG W+G + F+  V+ +  + + L+Q++++TGY LFG C+ L V+
Sbjct:  102 YVWNASKQTAKRAFDLYANIDILRPYFHVEPHEVRERLIASMLPSLPKKSSPVTVNGELYGPLMLVFTLIAILLFSMKSSGHTVQEGTLIGTAFAICFGYWIGASCFFKIVAYICNTHLTLLQTISLTGYALFGPCLCLFVT 243          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A8B6XRP8_HYDVU (Protein YIPF n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XRP8_HYDVU)

HSP 1 Score: 85.1 bits (209), Expect = 4.320e-17
Identity = 44/122 (36.07%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGMQ-RDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS 399
            ++D L   F ++ ++ L RL  SLVP    +      +L+GP+M+VFTL  + LF      H  +  T++GT++ V FG WLG + F+Y +S L  + + L+Q V++TGY LF  C+ +L++
Sbjct:  108 NIDTLRPYFDVEPKEVLVRLSQSLVPRKTTKPQTVAGELYGPMMVVFTLVALLLFSMKFSGHTVQEGTLMGTAIGVCFGYWLGGSIFFYFLSYLCNAHITLLQIVSLTGYALFSHCICILLA 229          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A813ZBH6_9BILA (Protein YIPF3 n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813ZBH6_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 7.970e-17
Identity = 42/120 (35.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGM-QRDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLL 393
            +LD L   F ++ ++ L RL  SL+P M  R+   +P+L+GP M+VFTLA + ++   +  H  +  T++GT+  + FG W+G++    +VS +  +R+ + Q +++ GY LF  CV LL
Sbjct:   25 NLDYLRPYFDVEPKEVLSRLIHSLIPRMPSREENVKPELYGPSMIVFTLAAILIYQMKLSSHSVQDGTLIGTAFFICFGYWIGSSFAISSVSFICNTRLSITQILSLNGYALFSHCVVLL 144          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A818W7F7_9BILA (Protein YIPF3 n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A818W7F7_9BILA)

HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16
Identity = 41/122 (33.61%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVP-GMQRDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS 399
            +LD L   F ++ ++ ++RL  SL+P  + R+   +P+L+GP M+VFTLA + ++   +  H  +  T++GTS  V FG W+G+     + + +  +++ L+Q +++ GY LF  CV LL+S
Sbjct:   38 NLDYLRPYFDVEPKEVVQRLVRSLIPRSLPREENVKPELYGPSMIVFTLAAILIYQMKLSSHSVQDGTLIGTSFLVCFGFWIGSGFAISSFTFVCNTQLSLMQILSINGYALFSHCVVLLIS 159          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: UPI001FB7548D (protein YIPF3 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB7548D)

HSP 1 Score: 83.6 bits (205), Expect = 1.820e-16
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 AEYVW-SGVRKA-------LSLDRLAELFSLDQEDALRRLWGSLVP----GMQRDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS 399
            A+ VW +G R+A        ++D L   F ++      RL  S++P       + VA   +L+GPLMLVFTL  + L          R  T++GT++   FG WLG +SF Y +S L+ +++ ++Q++++ GYGLFG CV LLVS
Sbjct:   87 ADEVWQAGKRQASRAFSLYANIDILRPYFDVEPVQVRSRLIESMIPVPMINFPQKVAG--ELYGPLMLVFTLVAILLHGMKTSGTVIREGTLMGTAIGTCFGYWLGVSSFIYFLSYLVNAQITMLQTLSLLGYGLFGHCVVLLVS 229          
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Match: A0A820N412_9BILA (Protein YIPF3 (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820N412_9BILA)

HSP 1 Score: 80.9 bits (198), Expect = 1.840e-16
Identity = 38/121 (31.40%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   37 SLDRLAELFSLDQEDALRRLWGSLVPGMQRDVAARPDLWGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYYAVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS 399
            +LD L   F ++  + ++RL  SL+P        +P+L+GP M+VFTLA + ++   +  H  +  T++GTS  V FG W+G++    + S +  +++ L+Q +++ GY LF  C+ L ++
Sbjct:   40 NLDYLRPYFDVEPREVIQRLIRSLIPRRLSQENIKPELYGPSMIVFTLAAILIYQMKLSSHSVQDGTLIGTSFLVCFGYWIGSSFAISSFSFIFNTQLSLMQVLSINGYALFSHCIVLFLA 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BQ57_9STRA4.080e-2456.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7M5X0W9_9CNID1.660e-1838.46Protein YIPF n=1 Tax=Clytia hemisphaerica TaxID=25... [more]
A0A8B7DF87_HYDVU2.750e-1836.67Protein YIPF n=1 Tax=Hydra vulgaris TaxID=6087 Rep... [more]
A0A7I8VYZ8_9ANNE6.160e-1839.50Protein YIPF3 n=1 Tax=Dimorphilus gyrociliatus Tax... [more]
UPI001F04D1671.500e-1731.69protein YIPF3-like n=1 Tax=Xenia sp. Carnegie-2017... [more]
A0A8B6XRP8_HYDVU4.320e-1736.07Protein YIPF n=2 Tax=Hydra vulgaris TaxID=6087 Rep... [more]
A0A813ZBH6_9BILA7.970e-1735.00Protein YIPF3 n=1 Tax=Didymodactylos carnosus TaxI... [more]
A0A818W7F7_9BILA1.320e-1633.61Protein YIPF3 n=6 Tax=Adineta steineri TaxID=43372... [more]
UPI001FB7548D1.820e-1636.55protein YIPF3 n=1 Tax=Mugil cephalus TaxID=48193 R... [more]
A0A820N412_9BILA1.840e-1631.40Protein YIPF3 (Fragment) n=1 Tax=Rotaria sp. Silwo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13075contigP-wetherbeei_contig13075:818..1449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_08173T0
PFAMsYip1
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K00688,ko:K15149
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0031224,GO:0031267,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234
Exons2
Evalue4.33e-18
EggNOG OGsKOG3114@1|root,KOG3114@2759|Eukaryota
EC2.4.1.1
DescriptionRab GTPase binding
Cds size399
COG categoryS
CAZyGT35
BRITEko00000,ko00001,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.0647426-CDS-P-wetherbeei_contig13075:817..10031683185973.0647426-CDS-P-wetherbeei_contig13075:817..1003Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13075 818..1003 +
1683185973.075914-CDS-P-wetherbeei_contig13075:1236..14491683185973.075914-CDS-P-wetherbeei_contig13075:1236..1449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13075 1237..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13075.1.1prot_P-wetherbeei_contig13075.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13075 818..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13075.1.1

>prot_P-wetherbeei_contig13075.1.1 ID=prot_P-wetherbeei_contig13075.1.1|Name=mRNA_P-wetherbeei_contig13075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
AEYVWSGVRKALSLDRLAELFSLDQEDALRRLWGSLVPGMQRDVAARPDL
WGPLMLVFTLAQVFLFCTDVVRHHCRRETMLGTSLAVAFGTWLGTASFYY
AVSLLLASRVRLVQSVAVTGYGLFGWCVGLLVS
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mRNA from alignment at P-wetherbeei_contig13075:818..1449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13075.1.1 ID=mRNA_P-wetherbeei_contig13075.1.1|Name=mRNA_P-wetherbeei_contig13075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=632bp|location=Sequence derived from alignment at P-wetherbeei_contig13075:818..1449+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGTACGTTTGGTCGGGGGTGCGGAAGGCGCTCAGCCTGGACCGCCT GGCGGAGCTGTTCTCGCTGGACCAGGAGGACGCGCTGCGGCGGCTTTGGG GCAGCTTGGTGCCTGGGATGCAGCGGGACGTGGCGGCGCGGCCGGACCTG TGGGGGCCGCTCATGCTCGTCTTTACGCTCGCCCAAGTGAGATGGGTTCG CCCCTCCTCTTTCTGCCCTCTGAATGGCTCGTGATGTGTGTCATCTAACT TGAAATTGATTACTTGTTTTTGACGGGTACGGCTGCTCGAGGGATGGGAC AGGCCGCTCGAGAAAGGTTGGCGTTCTGGTCTTCGTCCTCTGTTAGGTTT TAACTGAATTGAACCGCTTTGTGGTTCGGACGGGTGGTGCGCTTGCCATC TTCCCTTTTCGAACCCCAGGTGTTTCTGTTCTGTACTGATGTGGTGCGGC ATCACTGCCGCCGCGAGACTATGCTCGGCACCTCCCTCGCCGTCGCCTTT GGCACGTGGCTCGGCACTGCGTCCTTCTACTACGCCGTCTCGCTCTTGCT GGCGTCCCGCGTCCGACTCGTCCAGAGCGTGGCTGTCACGGGCTATGGTC TGTTCGGCTGGTGCGTTGGCCTCCTCGTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13075:818..1449+

>mRNA_P-wetherbeei_contig13075.1.1 ID=mRNA_P-wetherbeei_contig13075.1.1|Name=mRNA_P-wetherbeei_contig13075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig13075:818..1449+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGTACGTTTGGTCGGGGGTGCGGAAGGCGCTCAGCCTGGACCGCCT
GGCGGAGCTGTTCTCGCTGGACCAGGAGGACGCGCTGCGGCGGCTTTGGG
GCAGCTTGGTGCCTGGGATGCAGCGGGACGTGGCGGCGCGGCCGGACCTG
TGGGGGCCGCTCATGCTCGTCTTTACGCTCGCCCAAGTGTTTCTGTTCTG
TACTGATGTGGTGCGGCATCACTGCCGCCGCGAGACTATGCTCGGCACCT
CCCTCGCCGTCGCCTTTGGCACGTGGCTCGGCACTGCGTCCTTCTACTAC
GCCGTCTCGCTCTTGCTGGCGTCCCGCGTCCGACTCGTCCAGAGCGTGGC
TGTCACGGGCTATGGTCTGTTCGGCTGGTGCGTTGGCCTCCTCGTCAGC
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