mRNA_P-wetherbeei_contig13062.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13062.1.1
Unique NamemRNA_P-wetherbeei_contig13062.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: UPI001F5D7654 (serine/threonine-protein kinase CTR1-like isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D7654)

HSP 1 Score: 146 bits (369), Expect = 6.590e-36
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVLGGEIRE 603
            L +V E  +RGS+  LLH     E L      +M +DVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSF V+++E +  Q PW     AQ+  AV  +G RP +P   +P V  ++ E CW + P RRP+F  +  +L+  +  L  +++E
Sbjct:  190 LSIVTEYLSRGSLYRLLHRHGARENLDERRCLSMAFDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDVYSFAVILWELMTLQKPWSNLNPAQVVAAVGFRGRRPEIPSSVDPKVAAII-ESCWAKEPWRRPSFATIMESLKPLIKTLPPQLQE 387          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: B3FIB3_ACTDE (CTR1-like protein kinase CTR2 (Fragment) n=1 Tax=Actinidia deliciosa TaxID=3627 RepID=B3FIB3_ACTDE)

HSP 1 Score: 142 bits (358), Expect = 8.570e-36
Identity = 79/193 (40.93%), Postives = 106/193 (54.92%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAV 576
            L +V E  +RGS+  LLH     E L      +M YDVAKGM YLH   P ++H DLKSLNLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SD+YSFGV+++E    Q PW     AQ+  AV  K +R  +P    P V  ++ E CW   P +RP+F  +   LR  +
Sbjct:   41 LSIVTEYLSRGSLYRLLHKPGAREVLDERRRLSMAYDVAKGMNYLHNCNPPIVHRDLKSLNLLVDQKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDIYSFGVILWELATLQPPWSNLNSAQVVAAVGFKSMRLVMPQDINPRVASII-EACWANEPWKRPSFSTIMEPLRPLI 229          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: A0A1D6H9M1_MAIZE (Serine/threonine-protein kinase CTR1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6H9M1_MAIZE)

HSP 1 Score: 143 bits (361), Expect = 1.170e-35
Identity = 82/196 (41.84%), Postives = 111/196 (56.63%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVL 585
            L +V E  +RGS+  LLH     E L      +M +DVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSFGV+++E +  Q PW     AQ+  AV  KG R  +P   +P V  V+ E CW + P RRP+F  +  +L+  +  L
Sbjct:   96 LSIVTEYLSRGSLYRLLHRHAARENLEERRRLSMAFDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDVYSFGVILWELMTLQQPWSNLNPAQVVAAVGFKGQRLEIPSSVDPKVAAVI-ESCWVREPWRRPSFASIMESLKLLIKTL 287          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: UPI0010A38D64 (serine/threonine-protein kinase CTR1 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A38D64)

HSP 1 Score: 147 bits (372), Expect = 1.740e-34
Identity = 82/193 (42.49%), Postives = 111/193 (57.51%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAV 576
            L +V E  +RGS+  LLH     E L   +  +M YDVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSFGV+++E    Q PW     AQ+  AV  KG RP +P    P +  V++E CW   P +RP+F+ +  +LR  +
Sbjct:  651 LSIVTEYLSRGSLYRLLHRPGAKEMLGERVRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDRKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSN---EKSDVYSFGVILWELATLQQPWSNLNPAQVVAAVGFKGKRPEIPRDLNPQIA-VIIEACWANEPWKRPSFEGIMDSLRSLI 839          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: UPI001651EC8F (uncharacterized protein LOC100191496 isoform X2 n=1 Tax=Zea mays TaxID=4577 RepID=UPI001651EC8F)

HSP 1 Score: 143 bits (361), Expect = 2.250e-34
Identity = 82/196 (41.84%), Postives = 111/196 (56.63%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVL 585
            L +V E  +RGS+  LLH     E L      +M +DVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSFGV+++E +  Q PW     AQ+  AV  KG R  +P   +P V  V+ E CW + P RRP+F  +  +L+  +  L
Sbjct:  241 LSIVTEYLSRGSLYRLLHRHAARENLEERRRLSMAFDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDVYSFGVILWELMTLQQPWSNLNPAQVVAAVGFKGQRLEIPSSVDPKVAAVI-ESCWVREPWRRPSFASIMESLKLLIKTL 432          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: UPI001F5CBCB9 (serine/threonine-protein kinase CTR1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CBCB9)

HSP 1 Score: 146 bits (369), Expect = 3.590e-34
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVLGGEIRE 603
            L +V E  +RGS+  LLH     E L      +M +DVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSF V+++E +  Q PW     AQ+  AV  +G RP +P   +P V  ++ E CW + P RRP+F  +  +L+  +  L  +++E
Sbjct:  575 LSIVTEYLSRGSLYRLLHRHGARENLDERRCLSMAFDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDVYSFAVILWELMTLQKPWSNLNPAQVVAAVGFRGRRPEIPSSVDPKVAAII-ESCWAKEPWRRPSFATIMESLKPLIKTLPPQLQE 772          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: C0KTA2_9ROSA (CTR1-like protein kinase CTR1 (Fragment) n=1 Tax=Rhaphiolepis bibas TaxID=2843217 RepID=C0KTA2_9ROSA)

HSP 1 Score: 137 bits (346), Expect = 4.520e-34
Identity = 78/189 (41.27%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIAL 564
            L +V E  +RGS+  LLH +   E L      +M YDVAKGM YLH+  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSFGV+++E    Q PW     AQ+  AV  K  R  +P    P V  ++ E CW   P +RP+F  +  +L
Sbjct:   41 LSIVTEYLSRGSLYRLLHKAGAREALDERRRLSMAYDVAKGMNYLHRRKPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSN---EKSDVYSFGVILWELATMQQPWGNLNPAQVVAAVGFKNKRLEIPRDLNPNVAAII-EACWANEPWKRPSFASIMDSL 225          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: A0A0V0IVY9_SOLCH (Putative ovule protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A0V0IVY9_SOLCH)

HSP 1 Score: 139 bits (351), Expect = 6.820e-34
Identity = 81/193 (41.97%), Postives = 107/193 (55.44%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAV 576
            L +V E  +RGS+  LLH     E L      +M YDVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSFGV+++E    Q PW     AQ+  AV  KG R  +P    P V  ++ E CW + P +RP+F  +   LR  +
Sbjct:  124 LSIVTEYLSRGSLYRLLHKPGAREVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSN---EKSDVYSFGVILWELATLQQPWSNLNPAQVVAAVGFKGKRLDIPRDLTPQVASII-EACWAKEPWKRPSFAAIMDMLRPLI 312          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: A0A835HGL5_9MAGN (Protein kinase domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HGL5_9MAGN)

HSP 1 Score: 145 bits (367), Expect = 8.230e-34
Identity = 82/193 (42.49%), Postives = 111/193 (57.51%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAV 576
            L +V E  +RGS+  LLH S   E L      +M +DVAKGM YLH+  P ++H DLKS NLL+     VK+CDFGL+++K ++  S   A GT  WM PE   DE  +      DVYSFGV+++E +  QLPW    +AQ+  AV  K  R  +P G  P V  VL+E CW   P +RP+F  V  +L+  +
Sbjct:  695 LSIVTEYLSRGSLYRLLHKSGAREMLDERRRLSMAFDVAKGMNYLHRRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSAKSAAGTPEWMAPEVLRDEPSD---EKCDVYSFGVILWELMTLQLPWRNLNQAQVVAAVGFKNKRLEIPHGVNPQVA-VLIEACWANEPWKRPSFSSVMESLKPMI 883          
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Match: A0A0Q3JMY3_BRADI (Protein kinase domain-containing protein n=9 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3JMY3_BRADI)

HSP 1 Score: 145 bits (366), Expect = 8.970e-34
Identity = 80/196 (40.82%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LCLVMELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLHHDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFEDEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAV-LKGLRPTLPDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVL 585
            L +V E  +RG++  LLH     E L      +M +DVAKGM YLHK  P ++H DLKS NLL+     VK+CDFGL+++K ++  S+  A GT  WM PE   DE        SDVYSF V+++E +  Q PW     AQ+  AV  +G RP +P   +P V  ++ E CW + P RRP+F  +  +L+  + VL
Sbjct:  578 LSIVTEYLSRGNLYRLLHRHGARENLDERRRLSMAFDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKTAAGTPEWMAPEVLRDEPSN---EKSDVYSFAVILWELMTLQQPWSNLNPAQVVAAVGFRGRRPEIPSSVDPKVAAII-ESCWAKEPWRRPSFTSIMESLKPLIKVL 769          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13062.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F5D76546.590e-3640.10serine/threonine-protein kinase CTR1-like isoform ... [more]
B3FIB3_ACTDE8.570e-3640.93CTR1-like protein kinase CTR2 (Fragment) n=1 Tax=A... [more]
A0A1D6H9M1_MAIZE1.170e-3541.84Serine/threonine-protein kinase CTR1 n=1 Tax=Zea m... [more]
UPI0010A38D641.740e-3442.49serine/threonine-protein kinase CTR1 n=1 Tax=Proso... [more]
UPI001651EC8F2.250e-3441.84uncharacterized protein LOC100191496 isoform X2 n=... [more]
UPI001F5CBCB93.590e-3440.10serine/threonine-protein kinase CTR1-like n=1 Tax=... [more]
C0KTA2_9ROSA4.520e-3441.27CTR1-like protein kinase CTR1 (Fragment) n=1 Tax=R... [more]
A0A0V0IVY9_SOLCH6.820e-3441.97Putative ovule protein n=2 Tax=Pentapetalae TaxID=... [more]
A0A835HGL5_9MAGN8.230e-3442.49Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A0Q3JMY3_BRADI8.970e-3440.82Protein kinase domain-containing protein n=9 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13062contigP-wetherbeei_contig13062:5..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog15368.BRADI3G44707.1
Preferred nameCTR1
PFAMsEDR1,Pkinase_Tyr
Model size1408
Max annot lvl35493|Streptophyta
KEGG koko:K14510
KEGG Pathwayko04016,ko04075,map04016,map04075
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006464,GO:0006468,GO:0006629,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009628,GO:0009685,GO:0009686,GO:0009719,GO:0009723,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009750,GO:0009756,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010104,GO:0010105,GO:0010182,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016101,GO:0016102,GO:0016114,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031984,GO:0034284,GO:0034285,GO:0036211,GO:0036293,GO:0040034,GO:0042175,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046777,GO:0048506,GO:0048509,GO:0048510,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051716,GO:0065007,GO:0065008,GO:0070297,GO:0070298,GO:0070482,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071322,GO:0071704,GO:0098827,GO:0140096,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:2000026,GO:2000035,GO:2000069,GO:2000280
Exons3
Evalue2.24e-36
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,37JYB@33090|Viridiplantae,3GEAB@35493|Streptophyta,3KPNJ@4447|Liliopsida,3IGMY@38820|Poales
EC2.7.11.1
DescriptionEthylene-responsive protein kinase Le-CTR1
Cds size600
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.685249-UTR-P-wetherbeei_contig13062:4..5971683185972.685249-UTR-P-wetherbeei_contig13062:4..597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13062 5..597 -
1683185972.6993163-UTR-P-wetherbeei_contig13062:755..8111683185972.6993163-UTR-P-wetherbeei_contig13062:755..811Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13062 756..811 -
1683185972.7111177-UTR-P-wetherbeei_contig13062:916..10631683185972.7111177-UTR-P-wetherbeei_contig13062:916..1063Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13062 917..1063 -
1683185972.7274635-UTR-P-wetherbeei_contig13062:1663..16751683185972.7274635-UTR-P-wetherbeei_contig13062:1663..1675Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13062 1664..1675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.718154-CDS-P-wetherbeei_contig13062:1063..16631683185972.718154-CDS-P-wetherbeei_contig13062:1063..1663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13062 1064..1663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13062.1.1prot_P-wetherbeei_contig13062.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13062 1064..1663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13062.1.1

>prot_P-wetherbeei_contig13062.1.1 ID=prot_P-wetherbeei_contig13062.1.1|Name=mRNA_P-wetherbeei_contig13062.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
MELATRGSVCGLLHGSRRAEPLSLAMSAAMMYDVAKGMLYLHKLLPRVLH
HDLKSLNLLLFDGLVVKICDFGLAKVKQSSMSSTTRAKGTAAWMPPECFE
DEEVELWTRASDVYSFGVVMYEFLARQLPWPKRKEAQIALAVLKGLRPTL
PDGCEPGVLRVLMERCWDQLPARRPTFDDVAIALRDAVAVLGGEIREGS*
back to top

mRNA from alignment at P-wetherbeei_contig13062:5..1675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13062.1.1 ID=mRNA_P-wetherbeei_contig13062.1.1|Name=mRNA_P-wetherbeei_contig13062.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1671bp|location=Sequence derived from alignment at P-wetherbeei_contig13062:5..1675- (Phaeothamnion wetherbeei SAG_119_79)
CTCTGCCTCGTCATGGAGCTGGCGACGCGGGGCAGCGTTTGTGGCCTGCT CCACGGCTCCAGGAGGGCGGAACCTCTCTCTCTCGCCATGTCTGCGGCCA TGATGTACGATGTAGCCAAGGGCATGCTGTATCTGCACAAACTGCTTCCA CGGGTGTTGCATCACGACCTCAAGTCGCTCAACCTGCTTCTGTTCGACGG GCTCGTCGTCAAAATCTGCGACTTCGGGCTCGCCAAGGTGAAGCAGTCCA GCATGTCTTCTACCACCCGCGCCAAGGGCACGGCGGCGTGGATGCCGCCT GAGTGCTTCGAAGACGAGGAGGTCGAATTGTGGACGCGCGCATCTGACGT GTACAGCTTCGGAGTCGTCATGTACGAGTTTCTCGCGCGGCAGCTCCCAT GGCCGAAGCGGAAGGAGGCCCAAATTGCCCTCGCTGTCCTGAAGGGCCTA AGGCCAACTCTTCCGGACGGATGTGAGCCTGGTGTGCTGCGGGTGCTGAT GGAGCGGTGCTGGGATCAGCTTCCAGCGCGACGGCCAACCTTCGATGACG TGGCGATCGCTCTGAGAGACGCCGTCGCAGTGCTCGGTGGCGAGATCCGC GAGGGCTCCTGAAGTTGAGCATCTCAACAGGTGCCAGTGCTTCGAGCGGT GCTACAAGCGGTGCAACAAGTGGAACGGCGCCCATGGCGGAATTTACGAG TGGGTTCTCGCTTTCCAGCCTGACCACAGTCGATCTCAAGCCTGGGAAAA CTTCAGCAGGTGAGAAGAGCGTAAGCGGACGCTTCGCAGATTTAGTTGTG ACAATCTTTAGTTGACCCTTCACAATTTAGCTCACCCTCTTTCACTCGCC ACTTTCTCCCGCAGGATTCGCCGCTGGTAATGCTATCCTCCACGAGAAGG ATGCATTGCAGTTGTTGGAGGTGCGTGGTTTTGACACATTTCATTCTCCT TTCCTTATTTAATGAATAAGTGCTTCTCGGGTCGTCACTGTGCCAGATTT TGAGCGAGGCAGTCTGATGCTTTCAACCGTTATATTTCCTTTTGGTCTGC CACTGTCCTTCTACTGCTCTTTTCCTAGGACAAGGCTCGTCTGGAGGATT GTGCTGCGGTCGTGGCACTTATGCGCGCTCATGCCATGGATCGGCACCTC CAAGAACGGGGCTGCATTGCTGTCGTCAACCTGTCAGCGCCAGAGGGCTA CAGAGGAGACCTGAGTGATGCACCCGGGGGCTACGAGGCCGCGCTCAACG TGGCTGCCAACAACGACAACCAGCGCAAGCTTGGCGCAGTGGGGGCGTGC GAAGCAGTGATAGCAGCAATGCGCGCGCATTCCACCAACGCCGCCGTGCA GCGCGCGACAAGGCTGTTGGGCTGCCAAGAACCTCGGTCGAAATGACGAC AACACACGCAAGCTGGGCGCGGCGGGGGCCTGCGAGGCGGTTTTGGCGGC CATGAGCGCGCATTCGTCCAACGCCGCCGTGCAGGAGTACGCGTGCTGGG CCGTCGGCAACCTGGCTGACAACGATGACAACCAGCGCAAGCTGGGCGCG GCGGGGGCCTGCGAGGCGGTGGTGGCGGCCATGCGTGCGCATTCGACCAA CGCCGCCGTACAGGAATACGGGTGCGGTGCCGTCGAAAAGCTGGCTCACA ACTACGCAGACAACAGGCGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13062:5..1675-

>mRNA_P-wetherbeei_contig13062.1.1 ID=mRNA_P-wetherbeei_contig13062.1.1|Name=mRNA_P-wetherbeei_contig13062.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig13062:5..1675- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGGCGACGCGGGGCAGCGTTTGTGGCCTGCTCCACGGCTCCAG
GAGGGCGGAACCTCTCTCTCTCGCCATGTCTGCGGCCATGATGTACGATG
TAGCCAAGGGCATGCTGTATCTGCACAAACTGCTTCCACGGGTGTTGCAT
CACGACCTCAAGTCGCTCAACCTGCTTCTGTTCGACGGGCTCGTCGTCAA
AATCTGCGACTTCGGGCTCGCCAAGGTGAAGCAGTCCAGCATGTCTTCTA
CCACCCGCGCCAAGGGCACGGCGGCGTGGATGCCGCCTGAGTGCTTCGAA
GACGAGGAGGTCGAATTGTGGACGCGCGCATCTGACGTGTACAGCTTCGG
AGTCGTCATGTACGAGTTTCTCGCGCGGCAGCTCCCATGGCCGAAGCGGA
AGGAGGCCCAAATTGCCCTCGCTGTCCTGAAGGGCCTAAGGCCAACTCTT
CCGGACGGATGTGAGCCTGGTGTGCTGCGGGTGCTGATGGAGCGGTGCTG
GGATCAGCTTCCAGCGCGACGGCCAACCTTCGATGACGTGGCGATCGCTC
TGAGAGACGCCGTCGCAGTGCTCGGTGGCGAGATCCGCGAGGGCTCCTGA
back to top