mRNA_P-wetherbeei_contig13058.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13058.3.1
Unique NamemRNA_P-wetherbeei_contig13058.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A7X8XMC8_9BURK (Anti-sigma factor antagonist n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMC8_9BURK)

HSP 1 Score: 195 bits (495), Expect = 1.490e-62
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVLA 342
            +DIKVNTRS+ D+A  VEVQGEIDVYTSPRVKE INELIEKG ++L+I+LEGVRYIDSTGLGVLIGALKKVREH GRILL+CTNPQIKKIFNITGLVKIFEI+KDEEEA++ LA
Sbjct:    1 MDIKVNTRSVLDKAHVVEVQGEIDVYTSPRVKEMINELIEKGRFNLIIDLEGVRYIDSTGLGVLIGALKKVREHEGRILLICTNPQIKKIFNITGLVKIFEIYKDEEEALKALA 114          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A7Z9UBA8_9BACT (Anti-sigma factor antagonist n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UBA8_9BACT)

HSP 1 Score: 189 bits (479), Expect = 4.240e-60
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    7 IKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVLASAG 351
            +KVNTR +  +AQAVE+QGEIDVYTSPRVKETINELIE  +Y L+INLE VRYIDSTGLGVLIGALKKVREH+GRILLVCTNPQIKKIFNITGLVKIFEIF  EEEA+ VLA AG
Sbjct:    1 MKVNTRDLDGKAQAVEIQGEIDVYTSPRVKETINELIENENYQLLINLEKVRYIDSTGLGVLIGALKKVREHSGRILLVCTNPQIKKIFNITGLVKIFEIFASEEEALSVLAPAG 115          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A522N9C0_9BACT (Anti-sigma factor antagonist n=1 Tax=bacterium TaxID=1869227 RepID=A0A522N9C0_9BACT)

HSP 1 Score: 162 bits (409), Expect = 1.920e-49
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVLA 342
            +DIKVN R    + + +++ GEIDVYTSP VK+ I +LI++GHYHL+INLEGVRYIDSTGLGVLIGALK+VREH G + LVC NPQIKKIF+ITGLVKIF IF+ E+ A++ LA
Sbjct:    1 MDIKVNVRPADGETRVIDLVGEIDVYTSPAVKDAITQLIDEGHYHLLINLEGVRYIDSTGLGVLIGALKRVREHAGSVSLVCANPQIKKIFDITGLVKIFGIFETEQSAIKALA 114          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A522QEV9_9BACT (Anti-sigma factor antagonist n=2 Tax=bacterium TaxID=1869227 RepID=A0A522QEV9_9BACT)

HSP 1 Score: 161 bits (408), Expect = 2.720e-49
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVLA 342
            +DIKV+ R    +A+ V++ GEIDVYTSP VKE I ELI+ GHY+L+INLEGVRYIDSTGLGVLIGALK+VREH G + L+CTNPQ+KKIF+ITGLVKIF I+++E+ A++ LA
Sbjct:    1 MDIKVSVRPSDGEARVVDLVGEIDVYTSPAVKEAITELIDDGHYNLIINLEGVRYIDSTGLGVLIGALKRVREHAGSVNLICTNPQVKKIFDITGLVKIFGIYENEQSAIKALA 114          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A2W5XBG3_9BACT (Anti-sigma factor antagonist n=1 Tax=Candidatus Eremiobacteraeota bacterium TaxID=2052317 RepID=A0A2W5XBG3_9BACT)

HSP 1 Score: 159 bits (401), Expect = 3.170e-48
Identity = 78/113 (69.03%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVL 339
            +DIKVN R  +     VE+ GEIDVYTSP+VK+ I ELI++GHY+LVI+LE VRYIDSTGLGVLIG LK+VREH G + LVCTNPQIKKIF+ITGLVKIF IF DE+ A++ L
Sbjct:    1 MDIKVNVREAQGDIYVVELTGEIDVYTSPKVKDAITELIDQGHYNLVIDLEKVRYIDSTGLGVLIGGLKRVREHGGTVNLVCTNPQIKKIFDITGLVKIFGIFDDEDAAMKAL 113          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A2W5XPL3_9BACT (Anti-sigma factor antagonist n=1 Tax=Candidatus Eremiobacter sp. RRmetagenome_bin22 TaxID=2599629 RepID=A0A2W5XPL3_9BACT)

HSP 1 Score: 150 bits (380), Expect = 5.170e-45
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQA--VEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEA 327
            +DIKV  R +  +     V++ GEIDVYTSP+VKETI ELI+ GHY LVINLE VRYIDSTGLGVLIG LK+VREH+G + LVCTNPQIKKIF+ITGLVKIF I++ EE A
Sbjct:    1 MDIKVGVRELNGERNISIVDLNGEIDVYTSPKVKETIMELIDAGHYALVINLEKVRYIDSTGLGVLIGGLKRVREHSGAVNLVCTNPQIKKIFDITGLVKIFGIYETEEAA 111          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A1V5PGA0_9BACT (Anti-sigma factor antagonist n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PGA0_9BACT)

HSP 1 Score: 146 bits (369), Expect = 2.230e-43
Identity = 66/111 (59.46%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQ 333
            +++K  T+ I ++ + + ++GEIDVYTSP+VKE +N+LI+KG+Y++++NLE V YIDSTGLGVLIGALK+V+E+ G I LVCTN QIKKIF+ITGLVKIF+++  EE+A++
Sbjct:    1 MNVKTYTKEINNEIRGINIEGEIDVYTSPKVKEALNDLIQKGNYNIIVNLEEVSYIDSTGLGVLIGALKRVKENKGDIKLVCTNLQIKKIFDITGLVKIFDLYDTEEQALK 111          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A355TUJ6_9BACT (Anti-sigma factor antagonist (Fragment) n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TUJ6_9BACT)

HSP 1 Score: 142 bits (359), Expect = 4.560e-42
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   64 EIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVLASA 348
            EIDVYTSP+VK+TIN LIEKG Y+L++NLE VRYIDSTGLGVLIGALKKVREHNG I LVC + QIKK+F ITGLVKIF IF   EEAV     A
Sbjct:    1 EIDVYTSPKVKDTINALIEKGAYNLIVNLEQVRYIDSTGLGVLIGALKKVREHNGHIFLVCVDQQIKKVFTITGLVKIFRIFNTNEEAVAAFDKA 95          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: E6Q790_9ZZZZ (Anti-anti-sigma factor (Antagonist of RsbW) n=3 Tax=root TaxID=1 RepID=E6Q790_9ZZZZ)

HSP 1 Score: 134 bits (337), Expect = 1.930e-38
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVL 339
            +DI +  RS       V + GEIDVYTSP+VK+ I +LI+KG Y   I+++ VRYIDSTGLGVLIG LK+VREH G + LV TNPQ +KIF+ITGL+K+F+I+   +EAV  L
Sbjct:    4 VDINMQVRSANGSIAVVSLDGEIDVYTSPKVKDFIGKLIDKGTYTFAIDMQNVRYIDSTGLGVLIGGLKRVREHGGAVTLVSTNPQTRKIFDITGLIKVFDIYDSVDEAVDAL 116          
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Match: A0A7C3ZVA3_9BACT (Anti-sigma factor antagonist n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3ZVA3_9BACT)

HSP 1 Score: 131 bits (329), Expect = 3.370e-37
Identity = 57/113 (50.44%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINLEGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIFEIFKDEEEAVQVL 339
            +++K+ TRS+   A  ++++GEIDVYT+P++K+ + +L++KG  H+V+NL  V Y+DST LGVLIG LK++RE NG + ++C NP+I++IF ITGL KIF+I+  EEEA++ L
Sbjct:    1 MNLKLETRSVAKGASIIDIEGEIDVYTAPQLKQQMLDLLDKGATHIVVNLSEVEYLDSTALGVLIGGLKRLRERNGALDIICPNPRIRRIFEITGLDKIFDIYSTEEEAIKAL 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13058.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XMC8_9BURK1.490e-6284.21Anti-sigma factor antagonist n=1 Tax=Burkholderial... [more]
A0A7Z9UBA8_9BACT4.240e-6083.48Anti-sigma factor antagonist n=1 Tax=Phycisphaeral... [more]
A0A522N9C0_9BACT1.920e-4967.54Anti-sigma factor antagonist n=1 Tax=bacterium Tax... [more]
A0A522QEV9_9BACT2.720e-4967.54Anti-sigma factor antagonist n=2 Tax=bacterium Tax... [more]
A0A2W5XBG3_9BACT3.170e-4869.03Anti-sigma factor antagonist n=1 Tax=Candidatus Er... [more]
A0A2W5XPL3_9BACT5.170e-4569.37Anti-sigma factor antagonist n=1 Tax=Candidatus Er... [more]
A0A1V5PGA0_9BACT2.230e-4359.46Anti-sigma factor antagonist n=1 Tax=bacterium ADu... [more]
A0A355TUJ6_9BACT4.560e-4274.74Anti-sigma factor antagonist (Fragment) n=1 Tax=ba... [more]
E6Q790_9ZZZZ1.930e-3856.64Anti-anti-sigma factor (Antagonist of RsbW) n=3 Ta... [more]
A0A7C3ZVA3_9BACT3.370e-3750.44Anti-sigma factor antagonist n=1 Tax=Armatimonadet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13058contigP-wetherbeei_contig13058:1412..1765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog105420.BBPO01000068_gene3889
Preferred namersbV
PFAMsSTAS
Model size354
Max annot lvl201174|Actinobacteria
KEGG koko:K04749
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0042802
Exons1
Evalue1.53e-36
EggNOG OGsCOG1366@1|root,COG1366@2|Bacteria,2IHQG@201174|Actinobacteria,2NIJU@228398|Streptacidiphilus
DescriptionSTAS domain
Cds size354
COG categoryT
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.5805247-CDS-P-wetherbeei_contig13058:1411..17651683185972.5805247-CDS-P-wetherbeei_contig13058:1411..1765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13058 1412..1765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13058.3.1prot_P-wetherbeei_contig13058.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13058 1412..1765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13058.3.1

>prot_P-wetherbeei_contig13058.3.1 ID=prot_P-wetherbeei_contig13058.3.1|Name=mRNA_P-wetherbeei_contig13058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
LDIKVNTRSIKDQAQAVEVQGEIDVYTSPRVKETINELIEKGHYHLVINL
EGVRYIDSTGLGVLIGALKKVREHNGRILLVCTNPQIKKIFNITGLVKIF
EIFKDEEEAVQVLASAG*
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mRNA from alignment at P-wetherbeei_contig13058:1412..1765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13058.3.1 ID=mRNA_P-wetherbeei_contig13058.3.1|Name=mRNA_P-wetherbeei_contig13058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig13058:1412..1765- (Phaeothamnion wetherbeei SAG_119_79)
TTGGACATCAAGGTCAATACCAGAAGCATTAAAGATCAAGCACAAGCCGT TGAAGTACAGGGTGAGATCGATGTCTACACCTCTCCCCGCGTCAAAGAAA CGATCAACGAGCTCATCGAGAAAGGTCACTATCATCTGGTGATCAACCTC GAAGGCGTCCGCTACATCGACAGCACCGGCTTGGGCGTGCTCATCGGCGC TCTCAAGAAAGTGCGTGAGCACAATGGCCGTATTCTGTTGGTTTGCACCA ATCCGCAAATCAAGAAGATTTTCAACATCACCGGCTTGGTGAAGATTTTT GAAATCTTCAAGGACGAGGAAGAAGCTGTCCAGGTTCTAGCTTCGGCCGG CTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13058:1412..1765-

>mRNA_P-wetherbeei_contig13058.3.1 ID=mRNA_P-wetherbeei_contig13058.3.1|Name=mRNA_P-wetherbeei_contig13058.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig13058:1412..1765- (Phaeothamnion wetherbeei SAG_119_79)
TTGGACATCAAGGTCAATACCAGAAGCATTAAAGATCAAGCACAAGCCGT
TGAAGTACAGGGTGAGATCGATGTCTACACCTCTCCCCGCGTCAAAGAAA
CGATCAACGAGCTCATCGAGAAAGGTCACTATCATCTGGTGATCAACCTC
GAAGGCGTCCGCTACATCGACAGCACCGGCTTGGGCGTGCTCATCGGCGC
TCTCAAGAAAGTGCGTGAGCACAATGGCCGTATTCTGTTGGTTTGCACCA
ATCCGCAAATCAAGAAGATTTTCAACATCACCGGCTTGGTGAAGATTTTT
GAAATCTTCAAGGACGAGGAAGAAGCTGTCCAGGTTCTAGCTTCGGCCGG
CTAA
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