mRNA_P-wetherbeei_contig13052.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13052.2.1
Unique NamemRNA_P-wetherbeei_contig13052.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13052.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13052contigP-wetherbeei_contig13052:1178..1871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.409269-CDS-P-wetherbeei_contig13052:1177..15671683185972.409269-CDS-P-wetherbeei_contig13052:1177..1567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13052 1178..1567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.4181023-UTR-P-wetherbeei_contig13052:1567..16191683185972.4181023-UTR-P-wetherbeei_contig13052:1567..1619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13052 1568..1619 +
1683185972.4263961-UTR-P-wetherbeei_contig13052:1815..18711683185972.4263961-UTR-P-wetherbeei_contig13052:1815..1871Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13052 1816..1871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13052.2.1prot_P-wetherbeei_contig13052.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13052 1178..1567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13052.2.1

>prot_P-wetherbeei_contig13052.2.1 ID=prot_P-wetherbeei_contig13052.2.1|Name=mRNA_P-wetherbeei_contig13052.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
YGYLQGTEPFTLRIRAIGHALNHVELQTTAAGVVTEGFVAEKNGKGITCT
TPWCGAIDFPTAAATALTLVARPVQAKRPNIDAFSSWKRTLLGGSAAIIS
RGGRFCDVYNLERPDPHAQLHARHDRCPA*
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mRNA from alignment at P-wetherbeei_contig13052:1178..1871+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13052.2.1 ID=mRNA_P-wetherbeei_contig13052.2.1|Name=mRNA_P-wetherbeei_contig13052.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=694bp|location=Sequence derived from alignment at P-wetherbeei_contig13052:1178..1871+ (Phaeothamnion wetherbeei SAG_119_79)
TACGGATATCTCCAGGGAACTGAACCTTTTACCCTTCGCATCCGTGCTAT
TGGACACGCCCTCAACCACGTTGAACTGCAGACGACCGCCGCCGGTGTGG
TCACCGAAGGCTTTGTCGCAGAAAAGAATGGAAAAGGCATCACGTGCACA
ACCCCGTGGTGCGGCGCGATTGACTTTCCGACAGCCGCTGCTACAGCTTT
GACGCTAGTGGCTCGCCCGGTGCAGGCCAAGAGGCCCAACATCGACGCGT
TCAGCTCGTGGAAGCGGACGCTTCTCGGCGGGAGCGCGGCGATCATTTCG
CGGGGCGGACGCTTCTGCGACGTATACAATTTAGAACGACCAGACCCTCA
CGCCCAACTACATGCGCGTCATGACCGCTGTCCTGCCTGAGAATATCACG
CCGGTGCTGTCTGGCATCAAGGGCGCCTGCAGGGCCGACTCAGTAAGGCA
GCTGTCCTAGCGACGAGCTCTATCCCATTTGGTGTCATTCTTTTTTTGTG
GTGCGTGCTTCTCGTTCCGTGGCGTACGACTTCAGAGGAGGCACGGAGCA
CGGCTCCAAATGTGATGCATGTGTTAGTTGAACTCGTGCTCCCCCTTCCG
ACCATGTTTGCGTTCGATCGGCTGCCTGCTCTCCATAGGTCTCCTGGACC
GTGCCGGTAGGCGCAAAGTACAATAACGTCGTCGTATCCGTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13052:1178..1871+

>mRNA_P-wetherbeei_contig13052.2.1 ID=mRNA_P-wetherbeei_contig13052.2.1|Name=mRNA_P-wetherbeei_contig13052.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13052:1178..1871+ (Phaeothamnion wetherbeei SAG_119_79)
TACGGATATCTCCAGGGAACTGAACCTTTTACCCTTCGCATCCGTGCTAT
TGGACACGCCCTCAACCACGTTGAACTGCAGACGACCGCCGCCGGTGTGG
TCACCGAAGGCTTTGTCGCAGAAAAGAATGGAAAAGGCATCACGTGCACA
ACCCCGTGGTGCGGCGCGATTGACTTTCCGACAGCCGCTGCTACAGCTTT
GACGCTAGTGGCTCGCCCGGTGCAGGCCAAGAGGCCCAACATCGACGCGT
TCAGCTCGTGGAAGCGGACGCTTCTCGGCGGGAGCGCGGCGATCATTTCG
CGGGGCGGACGCTTCTGCGACGTATACAATTTAGAACGACCAGACCCTCA
CGCCCAACTACATGCGCGTCATGACCGCTGTCCTGCCTGA
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