mRNA_P-wetherbeei_contig13047.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13047.1.1
Unique NamemRNA_P-wetherbeei_contig13047.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: D7FUY2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUY2_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 6.120e-50
Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    1 VRGARGFRHLPGQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEKV 390
            ++GARG+R   GQYG GGRSSVN+ TVA+FGATGFLGR+VTN+LG+ GTRC++PNRGCEM+ R  K  FDLGQ  FPFY   DE S+R AI +AD VVNLIGK+YET+H   TR+ DG ++ V SSF+ V
Sbjct:   15 LQGARGYRKHLGQYGAGGRSSVNDKTVAVFGATGFLGRFVTNQLGRTGTRCFIPNRGCEMDVRRTKVQFDLGQVVFPFYSSSDEQSMRDAIGNADTVVNLIGKHYETKHLCFTRKEDGAINRVNSSFKNV 144          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: F0XY56_AURAN (RmlD_sub_bind domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY56_AURAN)

HSP 1 Score: 141 bits (355), Expect = 6.680e-38
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   22 RHLPGQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEKV 390
            +H  G+YG GGR SV+ V  A+FG  GFLGRYV +++G+IGTR  + NRGCE+E R LK  FD GQ   PFY   DE SI   I  A+VVVN++GKYYETR+ VPT+RADG  SNV  S+E+V
Sbjct:   43 QHRVGEYGLGGRHSVSGVRCALFGGIGFLGRYVCSEMGKIGTRVRVGNRGCELEARHLKVSFDHGQFHAPFYSARDEASIAEVIGRANVVVNMVGKYYETRNVVPTKRADGAYSNVNYSYEEV 165          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A7S3HC55_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC55_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.290e-37
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   43 GPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEKV 390
            GPGGRSS + +T  +FGA GF+GRY  ++LG+ G+R Y+P RGCEME R LKPMFDLGQ     + P D  SI  A+  +DVV+N+IGK+YET+H VPTRRADG LS V   FE+V
Sbjct:   33 GPGGRSSNSGITATVFGAYGFVGRYFVDELGKRGSRVYIPYRGCEMEIRHLKPMFDLGQLGLMPFSPRDRESICEAVKKSDVVINMIGKHYETKHIVPTRRADGNLSRVNYDFEEV 148          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A7S1TSG5_9STRA (Hypothetical protein (Fragment) n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSG5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.680e-36
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   43 GPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEK 387
            G GGRS+ +   V +FGA GFLGRYV N LGQ G    LPNRGCEME R L PMFDLGQA +P YH  DE SIRAA+A AD+V++L+GK YET+  VPT+RADG  + V  ++E+
Sbjct:   91 GRGGRSTSSGKRVVVFGAGGFLGRYVCNVLGQQGHVTVLPNRGCEMEYRHLHPMFDLGQAAYPLYHGKDEASIRAAVAGADMVISLVGKQYETKAMVPTKRADGTTTRVNFTYEE 205          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A836CC16_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC16_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.460e-36
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   79 VAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEKV 390
            + IFGATGFLGRYV ++LGQ+  R  +PNRGCEME R LKPMF LG A FPFY   DE S+R AI ++D+V+NL+GKYYET+H + TRRADG  S +   F ++
Sbjct:   31 ITIFGATGFLGRYVASRLGQLKARTNMPNRGCEMEIRHLKPMFSLGDAHFPFYSIRDETSVRQAIGESDIVINLVGKYYETKHIMKTRRADGTKSRINYGFAEI 134          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A6U0YMP2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0YMP2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.010e-34
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   10 ARGFRHLPGQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPT 339
            ARG+R   GQ+G GGRSSV+ + VA+FG TGFLGRYV N+ G+IG+  Y+  RG EME R LKPMFDLG     +Y   DE SIR  I  AD+VVNL+GK +ET+H VPT
Sbjct:   26 ARGYRTAVGQFGHGGRSSVSGLKVALFGGTGFLGRYVANEFGKIGSTAYVGTRGSEMEARHLKPMFDLGNLAIYYYDGRDEDSIRDIIRGADLVVNLVGKTFETKHVVPT 135          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A7S2G5Q4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5Q4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.620e-33
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   28 LPGQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISS 378
            + G+ G GGRSS++ + VA+FGATGFLGRYV N+LG+ GT   + NRGCEMETR L+PMFDLG     FY P D+ SIR  I   D+V+N+IGK YETR  +PT   DG L  +  S
Sbjct:   38 VSGEQGHGGRSSISGLKVAVFGATGFLGRYVVNELGKTGTTVTIGNRGCEMETRHLRPMFDLGNMAIEFYSPRDDDSIRRTIEGCDIVINMIGKRYETRKLLPTS-PDGALDPIKGS 153          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A8J2SDM8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDM8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.170e-31
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   34 GQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTRRADGMLSNVISSFEK 387
            G+YG GGR SV+ V  ++FGATGFLGRYV +++G++GTR  + NRG + ETR LK  FD GQ   PFY P D  S++  I  A   VN++GKYYET+  VPT++ DG  S V  S+E+
Sbjct:   38 GEYGLGGRHSVSGVRASLFGATGFLGRYVCSEMGKVGTRVRVGNRGSDDETRHLKVSFDHGQFHAPFYSPRDAASVQDVIGRATCTVNMVGKYYETKGVVPTKKPDGSKSRVNYSYEE 155          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A7S2UDV5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDV5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.720e-30
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   34 GQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETR 324
            G+ GPGGRSSV  + VA+FGA+GFLGRYV   LG  GT  YL NRG + E R+LKPMFDLG++ F FY   D  S+   IADADVV+NLIGKYYET+
Sbjct:   38 GEAGPGGRSSVAGLKVAVFGASGFLGRYVCENLGVNGTLTYLGNRGDDFEMRWLKPMFDLGRSKFVFYSSRDRQSMADVIADADVVINLIGKYYETK 134          
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Match: A0A7S1UWU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWU6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.780e-30
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   43 GPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTRCYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNLIGKYYETRHPVPTR 342
            GPGGR+S  ++ VAIFGATGFLGRYV ++LG  G   Y+ NRG EME R LK  FDLG+  F FY P D  S+   IADAD+VVNLIGKY+ET  PV T+
Sbjct:   57 GPGGRASNADLKVAIFGATGFLGRYVCSELGANGVLAYIANRGDEMEARHLKVCFDLGRTRFVFYSPRDRESVEDVIADADIVVNLIGKYHETGQPVETK 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY2_ECTSI6.120e-5063.85NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
F0XY56_AURAN6.680e-3857.72RmlD_sub_bind domain-containing protein n=1 Tax=Au... [more]
A0A7S3HC55_9STRA1.290e-3758.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1TSG5_9STRA1.680e-3660.00Hypothetical protein (Fragment) n=3 Tax=Phaeomonas... [more]
A0A836CC16_9STRA7.460e-3659.62NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6U0YMP2_9STRA5.010e-3459.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G5Q4_9STRA3.620e-3355.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SDM8_9STRA3.170e-3151.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UDV5_9STRA2.720e-3062.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1UWU6_9STRA4.780e-3061.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13047contigP-wetherbeei_contig13047:897..1576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009033150.1
PFAMsEpimerase,NAD_binding_10,NmrA,RmlD_sub_bind
Model size390
Max annot lvl2759|Eukaryota
KEGG rclassRC00299
KEGG koko:K01593,ko:K03953
KEGG TC3.D.1.6
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00190,ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04714,ko04723,ko04726,ko04728,ko04932,ko05010,ko05012,ko05016,ko05030,ko05031,ko05034,map00190,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04714,map04723,map04726,map04728,map04932,map05010,map05012,map05016,map05030,map05031,map05034
KEGG ModuleM00037,M00042,M00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070469,GO:0071704,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1990204
Exons3
Evalue1.1e-38
EggNOG OGsCOG0702@1|root,KOG2865@2759|Eukaryota
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-01_008630.1
EC4.1.1.105,4.1.1.28
DescriptionNADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
Cds size390
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.1232767-CDS-P-wetherbeei_contig13047:896..9521683185972.1232767-CDS-P-wetherbeei_contig13047:896..952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13047 897..952 +
1683185972.1348429-CDS-P-wetherbeei_contig13047:1055..11321683185972.1348429-CDS-P-wetherbeei_contig13047:1055..1132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13047 1056..1132 +
1683185972.1434464-CDS-P-wetherbeei_contig13047:1319..15761683185972.1434464-CDS-P-wetherbeei_contig13047:1319..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13047 1320..1576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13047.1.1prot_P-wetherbeei_contig13047.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13047 897..1576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13047.1.1

>prot_P-wetherbeei_contig13047.1.1 ID=prot_P-wetherbeei_contig13047.1.1|Name=mRNA_P-wetherbeei_contig13047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
VRGARGFRHLPGQYGPGGRSSVNNVTVAIFGATGFLGRYVTNKLGQIGTR
CYLPNRGCEMETRFLKPMFDLGQAWFPFYHPDDEPSIRAAIADADVVVNL
IGKYYETRHPVPTRRADGMLSNVISSFEKV
back to top

mRNA from alignment at P-wetherbeei_contig13047:897..1576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13047.1.1 ID=mRNA_P-wetherbeei_contig13047.1.1|Name=mRNA_P-wetherbeei_contig13047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=680bp|location=Sequence derived from alignment at P-wetherbeei_contig13047:897..1576+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCGGCGCACGAGGCTTCCGGCATCTCCCTGGGCAGTATGGACCGGG CGGCCGGTAAGTGGGAGCTCTTGGCTGTTGGCACAGCGTTTCATTCCTTG GCTTTTGGGAGAGTGCGCGATGCCAAAGCGTCCTCTCGAACGCTGCTCTT GCCGTGCAGGTCCTCTGTGAATAACGTGACCGTTGCCATCTTCGGCGCCA CGGGATTCTTGGGGCGCTATGTGACCAACAAGCTTGGTGAGTGACTCATG AAGCTGAACAGAGAAAACGGCCTTCGTCCTCTTTTTTACGATCATTTCGC TTCCGCGTATGTCTCGCTTCCACTCATCTTTTGCCTTTTGGCTCAGCAAT CGAGTTGCAAATCTTTGCAACCCCTAACCTTATCATCCCTCCCCACCCCC CTTTCTCCCCTTCACAACCACAGGGCAAATCGGGACGCGCTGCTACCTGC CGAATCGCGGCTGCGAGATGGAGACGCGCTTCCTGAAGCCCATGTTCGAC CTCGGCCAGGCGTGGTTCCCCTTCTACCACCCAGACGACGAGCCGAGCAT CCGCGCCGCCATCGCCGATGCGGACGTCGTCGTCAACCTCATCGGCAAGT ACTACGAGACGCGCCACCCCGTACCCACGCGACGGGCGGATGGCATGCTC TCCAACGTCATCTCCAGCTTCGAAAAGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13047:897..1576+

>mRNA_P-wetherbeei_contig13047.1.1 ID=mRNA_P-wetherbeei_contig13047.1.1|Name=mRNA_P-wetherbeei_contig13047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13047:897..1576+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCGGCGCACGAGGCTTCCGGCATCTCCCTGGGCAGTATGGACCGGG
CGGCCGGTCCTCTGTGAATAACGTGACCGTTGCCATCTTCGGCGCCACGG
GATTCTTGGGGCGCTATGTGACCAACAAGCTTGGGCAAATCGGGACGCGC
TGCTACCTGCCGAATCGCGGCTGCGAGATGGAGACGCGCTTCCTGAAGCC
CATGTTCGACCTCGGCCAGGCGTGGTTCCCCTTCTACCACCCAGACGACG
AGCCGAGCATCCGCGCCGCCATCGCCGATGCGGACGTCGTCGTCAACCTC
ATCGGCAAGTACTACGAGACGCGCCACCCCGTACCCACGCGACGGGCGGA
TGGCATGCTCTCCAACGTCATCTCCAGCTTCGAAAAGGTG
back to top