mRNA_P-wetherbeei_contig13046.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13046.1.1
Unique NamemRNA_P-wetherbeei_contig13046.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13046.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13046contigP-wetherbeei_contig13046:102..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.0337145-UTR-P-wetherbeei_contig13046:101..2431683185972.0337145-UTR-P-wetherbeei_contig13046:101..243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13046 102..243 -
1683185972.0612738-UTR-P-wetherbeei_contig13046:576..6411683185972.0612738-UTR-P-wetherbeei_contig13046:576..641Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13046 577..641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.0503075-CDS-P-wetherbeei_contig13046:243..5761683185972.0503075-CDS-P-wetherbeei_contig13046:243..576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13046 244..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13046.1.1prot_P-wetherbeei_contig13046.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13046 244..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13046.1.1

>prot_P-wetherbeei_contig13046.1.1 ID=prot_P-wetherbeei_contig13046.1.1|Name=mRNA_P-wetherbeei_contig13046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MNQKYAKSARGIGEGLCGWLRWRQRRRWQRRRRQRRRRLRRQLRQQWLRQ
PRWWAGRFFRQPAASQACLQRRSPPLAIAVQRIGGKKRSFTCRARASNSV
ACLRVGRLGS*
back to top

mRNA from alignment at P-wetherbeei_contig13046:102..641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13046.1.1 ID=mRNA_P-wetherbeei_contig13046.1.1|Name=mRNA_P-wetherbeei_contig13046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig13046:102..641- (Phaeothamnion wetherbeei SAG_119_79)
GCCTGTTGCCTGTCTGCAAGGCTGTCTCGGGGGAGGGGGGAGAATGGAAC
TGCGACACGTGCCAAATGAATCAAAAATATGCCAAGTCGGCAAGAGGCAT
CGGCGAAGGACTGTGCGGTTGGCTGCGGTGGCGGCAACGGCGGCGGTGGC
AGCGGCGGCGGCGACAGCGACGACGGCGGCTGAGGCGGCAGTTGCGGCAG
CAGTGGCTGCGGCAGCCGCGGTGGTGGGCCGGAAGGTTCTTCCGCCAGCC
TGCGGCCAGCCAAGCTTGTCTACAGAGGCGCTCTCCGCCTCTAGCGATTG
CCGTCCAGCGCATCGGAGGAAAGAAAAGGAGTTTCACTTGTCGCGCGCGC
GCCAGTAACAGCGTTGCATGTTTGCGAGTGGGGAGGCTGGGATCGTAGTT
CAGAGGAGCCATTGCATACTATCAGGAGCAAAATTGGGCGATTTGAAACC
GGCCTTCCTTTGCTTGGCCAGTTTGTCCTAACGAGGTGCCGTCGGCTGGC
ACCTGTTTATCCCATCCATAATATATTGTTGTTGCATTCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13046:102..641-

>mRNA_P-wetherbeei_contig13046.1.1 ID=mRNA_P-wetherbeei_contig13046.1.1|Name=mRNA_P-wetherbeei_contig13046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig13046:102..641- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCAAAAATATGCCAAGTCGGCAAGAGGCATCGGCGAAGGACTGTG
CGGTTGGCTGCGGTGGCGGCAACGGCGGCGGTGGCAGCGGCGGCGGCGAC
AGCGACGACGGCGGCTGAGGCGGCAGTTGCGGCAGCAGTGGCTGCGGCAG
CCGCGGTGGTGGGCCGGAAGGTTCTTCCGCCAGCCTGCGGCCAGCCAAGC
TTGTCTACAGAGGCGCTCTCCGCCTCTAGCGATTGCCGTCCAGCGCATCG
GAGGAAAGAAAAGGAGTTTCACTTGTCGCGCGCGCGCCAGTAACAGCGTT
GCATGTTTGCGAGTGGGGAGGCTGGGATCGTAG
back to top