mRNA_P-wetherbeei_contig1304.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1304.2.1
Unique NamemRNA_P-wetherbeei_contig1304.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1304.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1304contigP-wetherbeei_contig1304:5583..6002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185971.8536448-UTR-P-wetherbeei_contig1304:5582..56791683185971.8536448-UTR-P-wetherbeei_contig1304:5582..5679Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1304 5583..5679 +
1683185971.8788667-UTR-P-wetherbeei_contig1304:5994..60021683185971.8788667-UTR-P-wetherbeei_contig1304:5994..6002Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1304 5995..6002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185971.8633215-CDS-P-wetherbeei_contig1304:5679..59941683185971.8633215-CDS-P-wetherbeei_contig1304:5679..5994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1304 5680..5994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1304.2.1prot_P-wetherbeei_contig1304.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1304 5680..5994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1304.2.1

>prot_P-wetherbeei_contig1304.2.1 ID=prot_P-wetherbeei_contig1304.2.1|Name=mRNA_P-wetherbeei_contig1304.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MHCGTFQPAPYKHCSRRHRCALPPLSLLPPLQLETGSGGRAAAEERGRQR
LRGSHVLVQEDVSRSLRWLVILLRTCCVRLGRQLRGGTSSCTQTLRKTTL
SRKL*
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mRNA from alignment at P-wetherbeei_contig1304:5583..6002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1304.2.1 ID=mRNA_P-wetherbeei_contig1304.2.1|Name=mRNA_P-wetherbeei_contig1304.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig1304:5583..6002+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTTTACGGCCGGGCCGTATTTGTCTGACTGGAAGGAAAGACTGAGTTG
TGCGTTGAGCCTGCGCACAGCGAGGTAGAGCCAACCTTCCCACAACTATG
CATTGCGGCACTTTCCAGCCCGCCCCATATAAACACTGCAGCCGCCGCCA
TCGTTGCGCGCTGCCACCGCTATCACTGCTGCCGCCGCTGCAGCTAGAAA
CAGGCAGTGGCGGCAGAGCGGCAGCTGAGGAGCGAGGAAGGCAGCGCTTG
AGAGGCAGCCACGTTTTGGTACAGGAGGACGTTTCGAGGAGCCTGCGGTG
GCTGGTGATATTGTTGCGGACCTGCTGTGTGCGTCTCGGAAGGCAGCTAC
GTGGCGGCACCAGTTCCTGCACTCAAACCTTACGTAAAACAACGCTCAGC
CGGAAGCTGTAACACAAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1304:5583..6002+

>mRNA_P-wetherbeei_contig1304.2.1 ID=mRNA_P-wetherbeei_contig1304.2.1|Name=mRNA_P-wetherbeei_contig1304.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig1304:5583..6002+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATTGCGGCACTTTCCAGCCCGCCCCATATAAACACTGCAGCCGCCG
CCATCGTTGCGCGCTGCCACCGCTATCACTGCTGCCGCCGCTGCAGCTAG
AAACAGGCAGTGGCGGCAGAGCGGCAGCTGAGGAGCGAGGAAGGCAGCGC
TTGAGAGGCAGCCACGTTTTGGTACAGGAGGACGTTTCGAGGAGCCTGCG
GTGGCTGGTGATATTGTTGCGGACCTGCTGTGTGCGTCTCGGAAGGCAGC
TACGTGGCGGCACCAGTTCCTGCACTCAAACCTTACGTAAAACAACGCTC
AGCCGGAAGCTGTAA
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