mRNA_P-wetherbeei_contig13027.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA) HSP 1 Score: 266 bits (681), Expect = 6.740e-84 Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 1 Query: 346 LELAVYARSVS--MKLGPGGAGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVS 831 L V +RS MKLGPGG GLVGSD EL WDPLGFTNNQNPDTI WYRAAELKHGRV+MLAALG+IFQS+YHLPDPVFS++ +PW AL +VY ERPLA+ QILLA+FACEAIGQAQQAKPGQA GDL WDPL LK SDPETWEK QLRELKNGRLAM+A++ Sbjct: 25 LRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIA 188
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ) HSP 1 Score: 234 bits (597), Expect = 2.470e-71 Identity = 113/161 (70.19%), Postives = 132/161 (81.99%), Query Frame = 1 Query: 349 ELAVYARSVSMKLGPGGAGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVS 831 +A + ++SMKLG GL+GSD ELPE+DPLGFTNN P + WYRAAELKHGRV+MLAALGQ+ QSFYHLPDPVFSE+ KPW AL+KV ERPLA QI LA+FACEAIGQA QAKPGQA GDLGWDPL L+ S+ E +E+ QLRELKNGRLAM+A++ Sbjct: 26 SVAKSSGALSMKLGSSAEGLIGSDLELPEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDPVFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAIT 186
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA) HSP 1 Score: 207 bits (528), Expect = 4.960e-61 Identity = 107/156 (68.59%), Postives = 120/156 (76.92%), Query Frame = 1 Query: 370 SVSMKLGPGGAGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDP--VFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVS 831 +V+MKLG GL GSD E PE+DPLGFTNN P+T+ WYRAAELKHGRV+MLAALGQI Q FY LPD VFS D+P AL KV ERPLA QI LA+FA EA+GQ QAKPGQA GDLGWDPL LKS DPE + K Q RELKNGRLAM+A++ Sbjct: 32 AVTMKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIA 187
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC) HSP 1 Score: 201 bits (511), Expect = 1.660e-58 Identity = 101/157 (64.33%), Postives = 118/157 (75.16%), Query Frame = 1 Query: 376 SMKLGPGGAGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDP--VFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVSLLL 840 SMKLG GL+GSD E PE+DPLGFTNN + +T+ WYRAAELKHGRV MLAALGQ+ QSF+HLPDP VF TD + A KV ERP A QILLA+FA E +G QAKPGQA GDL +DP ++S DPE WE TQLRELKNGRLAM+ ++ +L Sbjct: 43 SMKLGTNAQGLIGSDLEWPEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAML 199
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE) HSP 1 Score: 182 bits (462), Expect = 2.160e-51 Identity = 93/153 (60.78%), Postives = 113/153 (73.86%), Query Frame = 1 Query: 370 SVSMKLGPGGAGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAV 828 S+ MKLG G+ G+DFELP++DP+GFT N +T+ WYRAAELKHGRV MLAALG I HLPD F E A+ K+ EERP A QI+LA+FA EA+GQ Q++PG+ GGDLG+DPLGLK SDPE E TQLRE+KNGRLAM+A+ Sbjct: 37 SLDMKLGRNAVGMPGTDFELPDFDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVAGITHLPDTCF-EGKGSLGAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAI 188
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO) HSP 1 Score: 180 bits (456), Expect = 2.420e-51 Identity = 88/116 (75.86%), Postives = 100/116 (86.21%), Query Frame = 1 Query: 484 WYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVS 831 WYRAAELKHGRV+MLAALGQIFQSFY LPDPVF+E PW A++KVYEERPLA+ QILLA FACEA G QA+PGQA GDLG+DPL LKS+DPE +E+ QLRELKNGRLAM A++ Sbjct: 1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDPVFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIA 116
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE) HSP 1 Score: 164 bits (414), Expect = 4.790e-44 Identity = 85/145 (58.62%), Postives = 103/145 (71.03%), Query Frame = 1 Query: 403 GLVGSDFELP-EWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDP--VFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAV 828 GLVG+D E +DPLGF N P + WYRAAELKHGRV MLAA GQI Q F H DP +F ++ W A+ +VYE+RP A QI+LA+FA E G +Q + +AGGDLG+DPLGLK S+PE WE+ QLRELKNGRLAM A+ Sbjct: 64 GLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEE-NEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAI 207
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC) HSP 1 Score: 162 bits (409), Expect = 1.870e-43 Identity = 85/156 (54.49%), Postives = 111/156 (71.15%), Query Frame = 1 Query: 364 ARSVSMKLGPGGAG-LVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAV 828 +R++ M L P AG LVG+D + P +DPLG + + +T+ WYRAAELKHGRV+MLAALG + Q+ Y LPD F E + P A+ K++ ERPLAI QIL A+ A E +G Q + + GGDL WDPLG+K +DPE + K QLRELKNGRLAM++V Sbjct: 42 SRTMQMALDPSFAGGLVGNDIDAPNFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNIYQLPDSPFQEAN-PINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQT-EDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISV 195
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.370e-41 Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 400 AGLVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVFSETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSSDPETWEKTQLRELKNGRLAMLAVS 831 +G+VGSD E+PE+DPLG N++ +T+ WYRAAELKHGRV MLA++G + Q YHLPD F E KP ALLKV ERPLA QI +A+ A E +G + Q A GDL +DPLGLK DPE + QL+ELKNGRLAMLA + Sbjct: 54 SGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPF-EASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYT--APGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATA 194
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Match: A0A0G4FYZ7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYZ7_9ALVE) HSP 1 Score: 146 bits (368), Expect = 1.140e-36 Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 406 LVGSDFELPEWDPLGFTNNQNPDTIAWYRAAELKHGRVSMLAALGQIFQSFYHLPDPVF-SETDKPWAALLKVYEERPLAIGQILLAVFACEAIGQAQQAKPGQAGGDLGWDPLGLKSS-----DPETWEKTQLRELKNGRLAMLAVSLLLF 843 +VGSD ELP +DP G + + P+T AWYRAAELKH R+ MLAALG Q LPDPVF S+ D W+AL V +RP A+ QILLA+ A E + + + G+A GD GWDPL L+ S +PE +E QLRELKNGRLAM++V+ +L+ Sbjct: 116 VVGSDVELPLFDPWGLSASIKPETFAWYRAAELKHARICMLAALGLFIQPLAQLPDPVFQSDPDSAWSALEAVSTQRPAAVAQILLAIAAIETL--SVNLQEGRAPGDYGWDPLKLQKSQGLEGNPEKFEAMQLRELKNGRLAMISVAGMLY 265 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13027.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13027.2.1 >prot_P-wetherbeei_contig13027.2.1 ID=prot_P-wetherbeei_contig13027.2.1|Name=mRNA_P-wetherbeei_contig13027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=333bp MRAGGPMDVWMLELAVYARSVSMKLGPGGAGLVGSDFELPEWDPLGFTNNback to top mRNA from alignment at P-wetherbeei_contig13027:2..1418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13027.2.1 ID=mRNA_P-wetherbeei_contig13027.2.1|Name=mRNA_P-wetherbeei_contig13027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1417bp|location=Sequence derived from alignment at P-wetherbeei_contig13027:2..1418+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13027:2..1418+ >mRNA_P-wetherbeei_contig13027.2.1 ID=mRNA_P-wetherbeei_contig13027.2.1|Name=mRNA_P-wetherbeei_contig13027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=999bp|location=Sequence derived from alignment at P-wetherbeei_contig13027:2..1418+ (Phaeothamnion wetherbeei SAG_119_79)back to top |