mRNA_P-wetherbeei_contig13020.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13020.1.1
Unique NamemRNA_P-wetherbeei_contig13020.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13020contigP-wetherbeei_contig13020:154..1900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1709
Hectar predicted targeting categoryother localisation
Exons2
Cds size1707
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185971.2857637-CDS-P-wetherbeei_contig13020:154..2351683185971.2857637-CDS-P-wetherbeei_contig13020:154..235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13020 155..235 -
1683185971.2970228-CDS-P-wetherbeei_contig13020:274..19001683185971.2970228-CDS-P-wetherbeei_contig13020:274..1900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13020 275..1900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13020.1.1prot_P-wetherbeei_contig13020.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13020 155..1900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13020.1.1

>prot_P-wetherbeei_contig13020.1.1 ID=prot_P-wetherbeei_contig13020.1.1|Name=mRNA_P-wetherbeei_contig13020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=569bp
GGTTQGFGKTADGFDFGGDNGGNGGGGEDENTFADGDAHPEIVARLAEDT
ALELAFVVADSPSSHARRLALQALTIFATRGRVGVVIQAAEEVPRELGGC
TFSAVVDVLKEEKRPAVLKLAAMLFLNEVLRAAGDDYESRVMLRGYMDAA
GMLENVEQLREFYCLWHDEELSDEEQGGDGDDDDASSVATADAHSVSDGG
GGGSSGHRASAASVSSGRRGSEGTATGGRSRHRRASTATSHEAKVLADLK
AQLDRFELMREEDEGRNDADDGGYGGGGGFGAGESGGGFGIGGGGGRFGS
GVGGRSDVAAGIRRLMLAAPAGSPERVVLEEALARLLLGGGGGGDGGAAA
AATAAAAAGSSPSSATAAAMAALAEAKAALEIERSDDDVESDTPAPPAEA
VPVLQVVPAPGAAPASLAESASAPKSELPARQSTPPLLMPRSPRTRALPR
SPSSILVPAASSSYGTSAEGGSAEGPAPAAPPLVVPTVASTGAPILPATP
AAVATLPPPAASLVPIVDPAAPAPTPAAVVDFRSKLPKVGPPPVVGPDGA
LRPPLLLVPPRFGPDGKIL
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mRNA from alignment at P-wetherbeei_contig13020:154..1900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13020.1.1 ID=mRNA_P-wetherbeei_contig13020.1.1|Name=mRNA_P-wetherbeei_contig13020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1747bp|location=Sequence derived from alignment at P-wetherbeei_contig13020:154..1900- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCACGACACAGGGGTTCGGCAAAACCGCCGATGGCTTCGACTTCGG
CGGCGACAACGGCGGAAACGGCGGCGGTGGGGAGGACGAAAATACTTTTG
CCGACGGCGACGCGCACCCGGAGATCGTGGCGCGGCTGGCAGAGGATACG
GCCCTCGAGCTGGCATTCGTTGTTGCTGACTCCCCCTCTTCACACGCTCG
CCGGCTGGCGCTCCAGGCGCTGACCATCTTCGCTACCCGCGGCCGCGTTG
GCGTCGTCATTCAGGCGGCGGAGGAGGTGCCCCGCGAACTCGGGGGCTGC
ACGTTCTCAGCGGTGGTCGACGTCCTGAAGGAAGAAAAGCGGCCGGCGGT
GCTCAAGCTGGCGGCGATGCTCTTTCTCAACGAGGTGCTGCGGGCGGCCG
GGGACGACTACGAGAGCCGCGTGATGCTGCGCGGCTACATGGACGCGGCC
GGTATGTTGGAGAACGTGGAGCAGCTGCGGGAGTTTTACTGCCTGTGGCA
CGATGAAGAACTGTCCGACGAGGAACAGGGCGGCGACGGCGACGACGACG
ATGCTAGCAGTGTGGCCACGGCAGACGCGCACAGCGTCAGCGATGGCGGC
GGCGGTGGCAGCAGCGGCCACAGGGCGTCGGCGGCGTCGGTCTCGTCAGG
TCGCCGCGGGAGTGAGGGGACAGCCACCGGCGGCCGGAGCAGGCATCGCC
GGGCCAGCACAGCAACCTCTCACGAGGCGAAAGTGCTGGCGGACTTGAAG
GCGCAGCTCGACCGCTTCGAGCTCATGCGGGAGGAAGACGAGGGCAGGAA
CGACGCTGACGATGGCGGCTACGGCGGCGGCGGCGGGTTTGGCGCTGGCG
AAAGCGGCGGCGGGTTTGGCATTGGCGGTGGCGGCGGAAGGTTTGGCAGT
GGGGTCGGCGGTCGCAGCGACGTGGCAGCAGGAATCCGCCGCTTGATGCT
TGCCGCGCCGGCGGGGTCGCCGGAACGCGTCGTGCTGGAAGAGGCGCTGG
CCCGGCTGCTGCTCGGGGGAGGCGGCGGCGGCGATGGCGGCGCCGCCGCT
GCCGCTACCGCCGCTGCCGCCGCAGGTTCCTCGCCCTCATCTGCAACCGC
TGCGGCGATGGCGGCGCTGGCAGAGGCAAAGGCCGCCCTGGAGATCGAAA
GAAGCGACGATGACGTTGAAAGCGACACACCGGCGCCTCCGGCCGAGGCG
GTGCCAGTGCTCCAGGTCGTGCCTGCACCGGGGGCAGCGCCGGCGTCCCT
GGCTGAGTCAGCATCGGCGCCGAAGTCCGAGTTGCCTGCGCGCCAGTCGA
CACCGCCGCTGCTGATGCCCCGGTCGCCGAGAACACGGGCGCTGCCGCGG
TCGCCCTCGTCGATCCTGGTGCCCGCTGCCAGCAGTTCGTACGGCACGTC
GGCGGAAGGTGGCAGCGCGGAAGGCCCGGCGCCGGCAGCTCCGCCGCTGG
TGGTACCTACCGTGGCTTCTACCGGCGCACCAATTCTTCCGGCGACGCCA
GCTGCAGTCGCCACATTGCCACCACCGGCGGCATCGCTGGTGCCGATCGT
GGACCCTGCCGCTCCGGCGCCAACTCCAGCCGCCGTCGTCGATTTCCGCA
GCAAGCTGCCGAAAGTTGGACCGCCGTCGTCGCCCTCGCCGTTGTCGCCG
CCGCCGCTGCCGCCGCCTGTCGTTGGCCCCGACGGCGCGCTGCGGCCGCC
GCTGCTGTTGGTGCCTCCGCGCTTCGGCCCCGACGGTAAGATACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13020:154..1900-

>mRNA_P-wetherbeei_contig13020.1.1 ID=mRNA_P-wetherbeei_contig13020.1.1|Name=mRNA_P-wetherbeei_contig13020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1707bp|location=Sequence derived from alignment at P-wetherbeei_contig13020:154..1900- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCACGACACAGGGGTTCGGCAAAACCGCCGATGGCTTCGACTTCGG
CGGCGACAACGGCGGAAACGGCGGCGGTGGGGAGGACGAAAATACTTTTG
CCGACGGCGACGCGCACCCGGAGATCGTGGCGCGGCTGGCAGAGGATACG
GCCCTCGAGCTGGCATTCGTTGTTGCTGACTCCCCCTCTTCACACGCTCG
CCGGCTGGCGCTCCAGGCGCTGACCATCTTCGCTACCCGCGGCCGCGTTG
GCGTCGTCATTCAGGCGGCGGAGGAGGTGCCCCGCGAACTCGGGGGCTGC
ACGTTCTCAGCGGTGGTCGACGTCCTGAAGGAAGAAAAGCGGCCGGCGGT
GCTCAAGCTGGCGGCGATGCTCTTTCTCAACGAGGTGCTGCGGGCGGCCG
GGGACGACTACGAGAGCCGCGTGATGCTGCGCGGCTACATGGACGCGGCC
GGTATGTTGGAGAACGTGGAGCAGCTGCGGGAGTTTTACTGCCTGTGGCA
CGATGAAGAACTGTCCGACGAGGAACAGGGCGGCGACGGCGACGACGACG
ATGCTAGCAGTGTGGCCACGGCAGACGCGCACAGCGTCAGCGATGGCGGC
GGCGGTGGCAGCAGCGGCCACAGGGCGTCGGCGGCGTCGGTCTCGTCAGG
TCGCCGCGGGAGTGAGGGGACAGCCACCGGCGGCCGGAGCAGGCATCGCC
GGGCCAGCACAGCAACCTCTCACGAGGCGAAAGTGCTGGCGGACTTGAAG
GCGCAGCTCGACCGCTTCGAGCTCATGCGGGAGGAAGACGAGGGCAGGAA
CGACGCTGACGATGGCGGCTACGGCGGCGGCGGCGGGTTTGGCGCTGGCG
AAAGCGGCGGCGGGTTTGGCATTGGCGGTGGCGGCGGAAGGTTTGGCAGT
GGGGTCGGCGGTCGCAGCGACGTGGCAGCAGGAATCCGCCGCTTGATGCT
TGCCGCGCCGGCGGGGTCGCCGGAACGCGTCGTGCTGGAAGAGGCGCTGG
CCCGGCTGCTGCTCGGGGGAGGCGGCGGCGGCGATGGCGGCGCCGCCGCT
GCCGCTACCGCCGCTGCCGCCGCAGGTTCCTCGCCCTCATCTGCAACCGC
TGCGGCGATGGCGGCGCTGGCAGAGGCAAAGGCCGCCCTGGAGATCGAAA
GAAGCGACGATGACGTTGAAAGCGACACACCGGCGCCTCCGGCCGAGGCG
GTGCCAGTGCTCCAGGTCGTGCCTGCACCGGGGGCAGCGCCGGCGTCCCT
GGCTGAGTCAGCATCGGCGCCGAAGTCCGAGTTGCCTGCGCGCCAGTCGA
CACCGCCGCTGCTGATGCCCCGGTCGCCGAGAACACGGGCGCTGCCGCGG
TCGCCCTCGTCGATCCTGGTGCCCGCTGCCAGCAGTTCGTACGGCACGTC
GGCGGAAGGTGGCAGCGCGGAAGGCCCGGCGCCGGCAGCTCCGCCGCTGG
TGGTACCTACCGTGGCTTCTACCGGCGCACCAATTCTTCCGGCGACGCCA
GCTGCAGTCGCCACATTGCCACCACCGGCGGCATCGCTGGTGCCGATCGT
GGACCCTGCCGCTCCGGCGCCAACTCCAGCCGCCGTCGTCGATTTCCGCA
GCAAGCTGCCGAAAGTTGGACCGCCGCCTGTCGTTGGCCCCGACGGCGCG
CTGCGGCCGCCGCTGCTGTTGGTGCCTCCGCGCTTCGGCCCCGACGGTAA
GATACTG
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