mRNA_P-wetherbeei_contig13002.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13002.1.1
Unique NamemRNA_P-wetherbeei_contig13002.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: D7FQ49_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ49_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 2.730e-104
Identity = 157/235 (66.81%), Postives = 189/235 (80.43%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAG--MKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MPY +   +RMR+FEHLV+AD+  HQP N PGVP+ VRRG VLEDGLAAL   G A    K+RL V+Y   AG +E+GIDMGGL+KDF TDLSA+AFD++YGLF  T +GLM+PNP S  VHG E HLRLF+FLGR+LGKALYEGIT+QP+FATFFLGF+RG  N++ LF+DL GLD ELYRNL+FLK+YDG  VEDL LTFTV ++ FGAN EV+L+PGG+   VTS+NRLEYV
Sbjct:   44 MPYCMSLTQRMRVFEHLVKADKQRHQPENTPGVPIRVRRGHVLEDGLAALGSGGRAEGQTKRRLIVMYTGAAGHEESGIDMGGLFKDFWTDLSALAFDINYGLFRVTKEGLMYPNPSSGMVHGSE-HLRLFQFLGRILGKALYEGITVQPEFATFFLGFIRGDYNFLHLFHDLHGLDPELYRNLMFLKTYDGGDVEDLCLTFTVADEEFGANKEVDLIPGGSRRAVTSANRLEYV 277          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A835Z958_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z958_9STRA)

HSP 1 Score: 285 bits (729), Expect = 9.240e-92
Identity = 152/241 (63.07%), Postives = 178/241 (73.86%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGK--------ALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MP+A+P  ER+R F  L  A R  HQP N PG+ + VRRGR LEDGLAA++R  G  M+KRL V+Y +  G QE+GID+GGL+KDF  DLSA AFD + GLF  T  GL++PNP S A+H    HLRLFEFLG VLGK        AL EGIT+QPQFATFFLGFMRG  +++ LF+DLAGLDEELYRNL+FLK YDG GVE L L+FTVT++ FGA  EVELVPGGA   VTS NRLEYV
Sbjct:   26 MPWALPLAERVRAFAALAAAVRARHQPENTPGITIRVRRGRALEDGLAAMDRLRGQ-MRKRLQVVYTSALGHQESGIDLGGLFKDFWVDLSAAAFDPARGLFRQTRAGLLYPNPASGALHAD--HLRLFEFLGAVLGKXXXXXXXXALLEGITVQPQFATFFLGFMRGGYDFLNLFHDLAGLDEELYRNLIFLKKYDGDGVETLCLSFTVTDEAFGAAREVELVPGGAQRAVTSRNRLEYV 263          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A7S3HMJ8_9STRA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMJ8_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.480e-79
Identity = 136/241 (56.43%), Postives = 169/241 (70.12%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPN----GP----GVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MP+AV F ERM+ F  ++ A+RL  Q  N    GP    GV V VR+ R+LEDG+ A+ R G A +K R+ V Y+ND G +EAGID GGL+KDF TDLS+  FD SYGLF TT+  LM+PNP +  +  P     +F FLGRVLGKAL+E IT+QPQFA FFL FM GK N+M L NDL  LD ELY+NL+FLK+YDG  + DLGLTF+VT+ + G   EVEL+PGGAN+ VTS NR  Y+
Sbjct:  102 MPWAVDFHERMKYFRAVLDAERLAVQGSNDAFNGPQRSRGVIVRVRKARILEDGMEAMARVG-ANIKDRIVVKYVNDFGEEEAGIDAGGLFKDFVTDLSSRIFDPSYGLFCTTSANLMYPNPSAAVLFDPHEMDTMFVFLGRVLGKALFENITLQPQFAHFFLAFMHGKYNFMNLINDLNTLDPELYKNLMFLKTYDG-DIADLGLTFSVTDTSMGGQKEVELLPGGANMDVTSQNRHRYI 340          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A7S1VV74_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV74_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.220e-72
Identity = 125/245 (51.02%), Postives = 171/245 (69.80%), Query Frame = 1
Query:    4 PYAVPFIERMRIFEHLVRADRLVHQ-----------PPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATT--ADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            P+ V F  R+++FE LV  +R+  Q           P   PG+PV + RGRVLEDGLA + + G   M++R+ V Y+N+AGAQEAGID+GGL+K+F TDL  +AFD +Y LF  T  A   M+PNP S + HG + H+ LFEFLGR+LGK++YE ITI P+FA FFL F+RG  N++ +  DL+ +D +LY NL+FLK+Y+G   EDL LTF++T D+FG N E+ L+PGGA+V VT+SN+  YV
Sbjct:  195 PFLVSFKRRLKLFERLVTTNRIEIQGQHNMNPFSNDPGLKPGIPVRIMRGRVLEDGLATMNKLGKR-MRERIVVHYLNEAGAQEAGIDVGGLFKEFWTDLCQVAFDPNYALFRVTEGAGNCMYPNPASFSAHGSD-HVTLFEFLGRILGKSMYEMITISPKFAHFFLSFLRGDYNFLHMLPDLSTMDPQLYNNLMFLKTYEG-DAEDLCLTFSITNDDFGGNREIALIPGGADVAVTNSNKQRYV 436          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: K3X758_GLOUD (HECT-type E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X758_GLOUD)

HSP 1 Score: 234 bits (598), Expect = 1.820e-72
Identity = 115/235 (48.94%), Postives = 164/235 (69.79%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVH--GPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MPY VPF +R+++F+ +++ D+  HQ        + +RRG +LEDGL  L     + +KKR+ V+++N AG +E GID GGL+K+F  DLS +AFD+ YGLF TT+D L++PNP S + H      HL LF+F+GR+LGKALYEGI ++P+FA FFL  +    N++   NDL  LD E+Y+NL+FLK+YDG  VEDLGLTFT+ +D FG   E+EL+PGG N+ V++ N+  Y+
Sbjct:    1 MPYLVPFPDRVKLFQRIIKVDKEAHQGDGSSVYRIRIRRGMILEDGLTKLNVIQ-SNLKKRINVVFVNAAGREEVGIDAGGLFKEFWLDLSNLAFDLQYGLFLTTSDQLLYPNPFSASNHFSRESDHLTLFQFVGRILGKALYEGIVVEPKFAHFFLSKLLHSFNHL---NDLPSLDPEIYKNLMFLKTYDG-DVEDLGLTFTIVQDVFGDQQEIELLPGGGNIAVSNHNKTRYI 230          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A7S2L7A9_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7A9_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.900e-72
Identity = 122/237 (51.48%), Postives = 167/237 (70.46%), Query Frame = 1
Query:    4 PYAVPFIERMRIFEHLVRADRLVHQPPNGP-----GVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            P+ V F  R+++FE +V  +R+  Q  N       G+ V V+RGRVLEDGL  L   G   M++R+CV Y++D G  E+G+D+GGL+K+F TDLSA+AFD +Y LF  T D LM+PNP S+ VHG +  ++LFEFLGR+LGKALYEGITIQPQFA  FL F+RG  +Y+ L  DL+ +D++LY NL+FLK+Y+G    DL L+FTV  D+FG  TE  L+P GA++ VT+ N+  Y+
Sbjct:  161 PFLVSFKRRLQLFERIVTTNRVDIQGSNEQRNLKRGIMVKVQRGRVLEDGLIHLNNLG-RNMRQRICVNYISDVGTTESGVDVGGLFKEFWTDLSALAFDPNYALFKVTEDSLMYPNPSSKFVHGGDMSMKLFEFLGRILGKALYEGITIQPQFAHLFLSFLRGDHSYLHLLTDLSTIDKQLYNNLMFLKTYEGDAA-DLCLSFTVANDDFGV-TEQNLIPNGADIEVTNGNKRRYI 394          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: H3G766_PHYRM (HECT-type E3 ubiquitin transferase n=4 Tax=Peronosporaceae TaxID=4777 RepID=H3G766_PHYRM)

HSP 1 Score: 233 bits (595), Expect = 5.750e-72
Identity = 119/235 (50.64%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVH--GPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MPY VPF +R+++F+ LV+AD+ VHQ  +     + + RG +LEDGL  L       +KKR+ V+++N AG +E GID GGL+K+F  DLS +AFD+ YGLF TT D L++PNP S + H      HL +F+F+ R+LGKALYEGI +QP+FA FFL  +    N +   N+L  LD E+Y+NL+FLKSYDG  VEDLGLT TV +D FG   E+E++PGG NV VTS N+  Y+
Sbjct:    5 MPYLVPFPDRVKLFQRLVKADKDVHQNESCSVYRIRIHRGAILEDGLKKLNSIR-TNLKKRINVVFVNSAGREEVGIDAGGLFKEFWLDLSTLAFDLQYGLFLTTQDQLLYPNPNSASDHFSRESDHLTMFQFVVRILGKALYEGIVVQPKFAHFFLSKLLHSFNQL---NELPSLDPEIYKNLMFLKSYDG-DVEDLGLTHTVVQDVFGEQKEIEIIPGGGNVPVTSRNKTRYI 234          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A8J5II24_9STRA (HECT domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5II24_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.400e-71
Identity = 118/235 (50.21%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVH--GPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MPY VPF ER+++F+ LV+AD+ +HQ  +     + + RG +LEDGL  L       +KKR+ V+++N AG +E GID GGL+K+F  DLS +AFD+ YGLF TT D L++PNP S + H      HL +F+F+GR+LGKALYEGI +QP+FA FFL  +    N +   N+L  LD E+Y+NL+FLKSYDG  VEDLGLT TV ++ FG   E+E++PGG NV VT+ N+  Y+
Sbjct:  139 MPYLVPFSERVKLFQRLVKADKDIHQNESCSVYRIRIHRGAILEDGLKKLNSIR-TNLKKRINVVFVNSAGREEVGIDAGGLFKEFWLDLSTLAFDLQYGLFLTTHDQLLYPNPNSASGHFSRDSDHLTMFQFVGRILGKALYEGIVVQPKFAHFFLSKLLHSFNQL---NELPSLDPEIYKNLMFLKSYDG-DVEDLGLTHTVVQEVFGEQKEIEIIPGGGNVPVTNRNKTRYI 368          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: A0A2D4BQE7_PYTIN (HECT-type E3 ubiquitin transferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQE7_PYTIN)

HSP 1 Score: 233 bits (594), Expect = 1.010e-70
Identity = 121/236 (51.27%), Postives = 168/236 (71.19%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATT-ADGLMFPNPQSRAVH--GPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            +P+ VPF ER+++F+ LV+AD+  HQ    P   V +RR  VLEDGL+ L    G  +KK++ V+++N AG+ E GID GGL+K+F  DL+ +AFD+ YGLF TT  D L++PNP + + H      HL LF+F+GR+LGKALYEGI +QP+FA FFL  +    N++   N+L  LD+E+Y+NL+FLKSY+G  VEDLGLTFTV +D FGA  EVELVP GA++ VT+ N++ Y+
Sbjct:  101 IPFIVPFPERVKLFQRLVQADKSTHQGDGLPVFRVRIRRAAVLEDGLSKLNVIRG-NLKKKINVVFVNAAGSDEVGIDAGGLFKEFWLDLANLAFDLEYGLFLTTPGDQLLYPNPHASSSHFARESDHLTLFQFVGRILGKALYEGIVVQPKFAHFFLSKLLHSHNHL---NELPSLDQEIYKNLLFLKSYEG-DVEDLGLTFTVVQDVFGAQQEVELVPNGASLPVTNHNKIRYI 331          
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Match: M4BHV9_HYAAE (HECT-type E3 ubiquitin transferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BHV9_HYAAE)

HSP 1 Score: 235 bits (600), Expect = 4.260e-70
Identity = 118/235 (50.21%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAALERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYGLFATTADGLMFPNPQSRAVH--GPETHLRLFEFLGRVLGKALYEGITIQPQFATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTFTVTEDNFGANTEVELVPGGANVGVTSSNRLEYV 699
            MPY VPF +R+++F+ LV+AD+ +HQ        + +RR  VLEDGL  L       +KKR+ V+++N AG +E GID GGL+K+F  DL+ +AFD+ YGLF TT D L++PNP S + H      HL LF+F+GR+LGKALYEGI +QP+FA FFL  +    N +   N+L  LD E+Y+NL+FLKSYDG  +EDLGLT TV +D FG   E+E++PGG NV VT+ N+  Y+
Sbjct:  263 MPYLVPFPDRVKLFQRLVKADKEIHQNQGCSVYRIRIRRDAVLEDGLRKLNTIR-TSLKKRINVVFVNSAGREEVGIDAGGLFKEFWEDLATLAFDLQYGLFLTTHDQLLYPNPNSASSHFTRESDHLTLFQFVGRILGKALYEGIVVQPKFAHFFLSKLLHSFNQL---NELPSLDPEIYKNLMFLKSYDG-DIEDLGLTHTVVQDAFGEQKEIEIIPGGGNVAVTNRNKTRYI 492          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ49_ECTSI2.730e-10466.81HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835Z958_9STRA9.240e-9263.07HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7S3HMJ8_9STRA1.480e-7956.43HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S1VV74_9STRA1.220e-7251.02HECT-type E3 ubiquitin transferase n=1 Tax=Grammat... [more]
K3X758_GLOUD1.820e-7248.94HECT-type E3 ubiquitin transferase n=1 Tax=Globisp... [more]
A0A7S2L7A9_9STRA1.900e-7251.48HECT-type E3 ubiquitin transferase n=1 Tax=Skeleto... [more]
H3G766_PHYRM5.750e-7250.64HECT-type E3 ubiquitin transferase n=4 Tax=Peronos... [more]
A0A8J5II24_9STRA4.400e-7150.21HECT domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2D4BQE7_PYTIN1.010e-7051.27HECT-type E3 ubiquitin transferase n=1 Tax=Pythium... [more]
M4BHV9_HYAAE4.260e-7050.21HECT-type E3 ubiquitin transferase n=1 Tax=Hyalope... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13002contigP-wetherbeei_contig13002:5..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQ49
Preferred nameUPL
PFAMsHECT
Model size699
Max annot lvl2759|Eukaryota
KEGG koko:K10588,ko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons4
Evalue4.48e-105
EggNOG OGsCOG5021@1|root,KOG4427@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin-protein transferase activity
Cds size699
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.3971353-CDS-P-wetherbeei_contig13002:4..671683185970.3971353-CDS-P-wetherbeei_contig13002:4..67Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13002 5..67 -
1683185970.4190814-CDS-P-wetherbeei_contig13002:328..4571683185970.4190814-CDS-P-wetherbeei_contig13002:328..457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13002 329..457 -
1683185970.4313226-CDS-P-wetherbeei_contig13002:662..9271683185970.4313226-CDS-P-wetherbeei_contig13002:662..927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13002 663..927 -
1683185970.4396393-CDS-P-wetherbeei_contig13002:1228..14701683185970.4396393-CDS-P-wetherbeei_contig13002:1228..1470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13002 1229..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13002.1.1prot_P-wetherbeei_contig13002.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13002 5..1470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13002.1.1

>prot_P-wetherbeei_contig13002.1.1 ID=prot_P-wetherbeei_contig13002.1.1|Name=mRNA_P-wetherbeei_contig13002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MPYAVPFIERMRIFEHLVRADRLVHQPPNGPGVPVHVRRGRVLEDGLAAL
ERAGGAGMKKRLCVIYMNDAGAQEAGIDMGGLYKDFHTDLSAMAFDMSYG
LFATTADGLMFPNPQSRAVHGPETHLRLFEFLGRVLGKALYEGITIQPQF
ATFFLGFMRGKCNYMTLFNDLAGLDEELYRNLVFLKSYDGAGVEDLGLTF
TVTEDNFGANTEVELVPGGANVGVTSSNRLEYV
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mRNA from alignment at P-wetherbeei_contig13002:5..1470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13002.1.1 ID=mRNA_P-wetherbeei_contig13002.1.1|Name=mRNA_P-wetherbeei_contig13002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1466bp|location=Sequence derived from alignment at P-wetherbeei_contig13002:5..1470- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTACGCCGTGCCGTTCATCGAGCGAATGCGCATCTTCGAACATCT TGTCCGTGCCGACCGCCTCGTGCACCAGCCGCCCAACGGGCCCGGGGTTC CTGTGCACGTCCGGCGCGGGCGTGTGCTGGAGGACGGGCTGGCGGCGCTG GAGCGGGCCGGCGGCGCGGGCATGAAGAAGCGACTGTGCGTTATCTACAT GAACGACGCGGGCGCGCAGGAGGCCGGCATCGACATGGGCGGGTGAGAAG CGTGTGGAAAAGATATGCTTGCCGAAGATGTGGAAAAGATATGCTCGCCG TGATTCGTTTTAGTTTTTTGTAATGTCGTCTTTTGGAAAGCGTCTGCAAG CTGAAAGGTGGTAAATCCCTGTTCCATGTCGAAAGCTCGGCTGTGGTAAA ACGCTTGCCTTGTTCTGCCGTTCGCCGTTTTCGCTGCCGCCAGCGTTCTT CCCCCGTCTCGCTTCTCTCTCCCCTTCTTTTCCATTCACGCTGCGCTATT CTACTGTTCCCCTCTTCCTTCCTGCCCCGCCCCGCATCAACAGGCTGTAC AAAGATTTCCACACGGACCTCTCCGCCATGGCGTTCGACATGTCCTATGG CCTCTTTGCCACCACCGCCGACGGCCTCATGTTCCCCAACCCGCAATCGC GCGCCGTCCACGGCCCCGAGACCCACCTGCGTCTCTTTGAGTTTTTGGGG CGGGTGCTGGGCAAGGCGCTGTACGAGGGCATCACTATCCAGCCGCAGTT CGCAACGTTCTTCCTGGGATTCATGCGTGGCAAATGCAACTACATGACGC TGTTTAATGTGAGTGGAGGAAGCGGGCGCCATTGGAGGCGGCCAAGCACG TGGGCAATAGGCGGCATTTGTGTATTCAGTTTCTGGGTCCGGGATTGTAT CTGGGCCTTTAGAACAGGCGGCCGGCGGGCTTTTGCGGCGTCGCGGCGCA TATGTGGCACATGACTTCGAACAGCTCTCCATGCACGCCTCTTTTTGCCA TTTCCCTTCCTAGGACCTGGCCGGACTGGACGAGGAGCTTTACCGGAACC TGGTCTTCCTCAAGAGCTACGACGGCGCCGGGGTCGAAGATCTCGGCCTC ACCTTCACCGTTACCGAAGACAACTTTGGCGCCAACACCGAGGTGTGTTA AACCCTTCACTTTCTCTGCATGGGCTTCCTTTGGTTTCATCCGTTGTTGC AGATGGTAGACACCCGTGCATTGTCGTACATAAAAAGCGTTTTTAGCAGC ATATTGGCCCCCCTTTTCCCATTTAGGCTCCGCATGCAAGCCTTTCAGCG CAATCGTTTCATGGGAATGGATGCCAACAATGTTCTTTGTTGTTGGAAAC CTAAGGAAACTCAACTTCCCCTCCCGTTGCCCCTCTCCTTCCAACCGCTT CAGGTGGAGCTTGTGCCTGGAGGGGCCAACGTTGGAGTCACCAGCTCGAA CCGACTCGAGTACGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13002:5..1470-

>mRNA_P-wetherbeei_contig13002.1.1 ID=mRNA_P-wetherbeei_contig13002.1.1|Name=mRNA_P-wetherbeei_contig13002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig13002:5..1470- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTACGCCGTGCCGTTCATCGAGCGAATGCGCATCTTCGAACATCT
TGTCCGTGCCGACCGCCTCGTGCACCAGCCGCCCAACGGGCCCGGGGTTC
CTGTGCACGTCCGGCGCGGGCGTGTGCTGGAGGACGGGCTGGCGGCGCTG
GAGCGGGCCGGCGGCGCGGGCATGAAGAAGCGACTGTGCGTTATCTACAT
GAACGACGCGGGCGCGCAGGAGGCCGGCATCGACATGGGCGGGCTGTACA
AAGATTTCCACACGGACCTCTCCGCCATGGCGTTCGACATGTCCTATGGC
CTCTTTGCCACCACCGCCGACGGCCTCATGTTCCCCAACCCGCAATCGCG
CGCCGTCCACGGCCCCGAGACCCACCTGCGTCTCTTTGAGTTTTTGGGGC
GGGTGCTGGGCAAGGCGCTGTACGAGGGCATCACTATCCAGCCGCAGTTC
GCAACGTTCTTCCTGGGATTCATGCGTGGCAAATGCAACTACATGACGCT
GTTTAATGACCTGGCCGGACTGGACGAGGAGCTTTACCGGAACCTGGTCT
TCCTCAAGAGCTACGACGGCGCCGGGGTCGAAGATCTCGGCCTCACCTTC
ACCGTTACCGAAGACAACTTTGGCGCCAACACCGAGGTGGAGCTTGTGCC
TGGAGGGGCCAACGTTGGAGTCACCAGCTCGAACCGACTCGAGTACGTT
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