mRNA_P-wetherbeei_contig13000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13000.1.1
Unique NamemRNA_P-wetherbeei_contig13000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13000contigP-wetherbeei_contig13000:2..1714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1T1
PFAMsAnk_2,Ank_4,Ank_5,FYVE,SAM_1
Model size1207
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0018996,GO:0022404,GO:0032501,GO:0042303,GO:0042395
Exons3
Evalue1.23e-11
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
EC2.7.1.150
Descriptionprotein ubiquitination
Cds size549
COG categoryI
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.3063707-UTR-P-wetherbeei_contig13000:1..3221683185970.3063707-UTR-P-wetherbeei_contig13000:1..322Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13000 2..322 +
1683185970.3600109-UTR-P-wetherbeei_contig13000:1377..17141683185970.3600109-UTR-P-wetherbeei_contig13000:1377..1714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13000 1378..1714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.3216562-CDS-P-wetherbeei_contig13000:322..3521683185970.3216562-CDS-P-wetherbeei_contig13000:322..352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13000 323..352 +
1683185970.3405046-CDS-P-wetherbeei_contig13000:614..7251683185970.3405046-CDS-P-wetherbeei_contig13000:614..725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13000 615..725 +
1683185970.3497913-CDS-P-wetherbeei_contig13000:969..13771683185970.3497913-CDS-P-wetherbeei_contig13000:969..1377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13000 970..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13000.1.1prot_P-wetherbeei_contig13000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13000 323..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13000.1.1

>prot_P-wetherbeei_contig13000.1.1 ID=prot_P-wetherbeei_contig13000.1.1|Name=mRNA_P-wetherbeei_contig13000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MVGRCKEPQDVLTPFVAAALVLHEEKALVEFMGGLLDPVHVIGRLSMGAI
SEVKACFLMPGELTLPDDRTILVTLYLVAVAYMMGLFAIGRGGGGGAGDC
DDDDAGVAAAAAALASAEFMAGKPKAQLQLELAEAWSKIRALEEENRQWA
SGAAGPVRAPDGARGQAKAPVVGTGGCGCVVS*
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mRNA from alignment at P-wetherbeei_contig13000:2..1714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13000.1.1 ID=mRNA_P-wetherbeei_contig13000.1.1|Name=mRNA_P-wetherbeei_contig13000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-wetherbeei_contig13000:2..1714+ (Phaeothamnion wetherbeei SAG_119_79)
TCATGAGAGGTTTCTGTACAAAAGAGCGGCATTGAAGCACAGCTTTGTTT
TGTACGGCTGGTTTCTTGGAGGATGTAATTGCGTCAGGCCGAATAACATC
AGCCGTGCAGCATGTCTAACAGCTGTCGCGGCATTAGAAAGTGGTATTCT
GTTGTACACTTTGTTTTGCAGTTCGATGTACTCCTCTGACAGCTTGCCCT
CTGTCTGTGCCCTCCGTGGAACTGTGGCGCTGCAGACCTATGGGAAAAAG
CTGTGCGCGTCTTCGGCGGCGGCACCTACCCTGAAGATCCGAGTATCGTC
GTCAAGGCCGGCATTGCCGAGATGGTGGGGCGCTGCAAGGAGCCGCAGGA
CGTGAGCGGAGCATCCGTTGTTTGGCCTGTGCGACTGCCCAGTAGCGTCA
GATTATTGGAGTGCGGCTCTGTGCGTCTAGTGCCGGTTATACGGGCTGCC
GTTCAACGTTTTACTTTAAAGCATTCCGAAACTTGTCAGGAAAGTCGATT
TAACTGTGTGAGGCTGATGAATCTTTCCTTCTTCCCCACTGCTTCTCTCT
CGCACGCCGGCGTTTCTTCACGTGGTGGTTCGATCCGTCCGCCATATGGA
TGCATGTAAGCAGGTGCTGACGCCGTTTGTAGCGGCGGCGCTGGTGCTGC
ACGAGGAGAAGGCGCTCGTCGAGTTCATGGGCGGGCTCCTCGATCCCGTC
CACGTCATCGGCCGCCTCTCCATGGTGGGAAATGCATCTTCTTCACTCCT
TTCCATGTCAACGTCTTCAATGGCTTTTTTGCAGCGTCTGGGTGTTTGCG
CAAAATGGCCGCTACAAACCTTTGAGGATTTTCGTGCATACCCTTTGAGG
CGTTTCGCATCAATCCTGCGCTCGCTCATTGACACGAAAACAGTCACGTA
CCGAAGTAATAATGTTCGTTACCCTCCCGCCTGGCTGTCCATGCGCTCCG
TTCGTTCCGTTTATGCAGGGTGCCATAAGCGAAGTGAAGGCGTGCTTCCT
CATGCCCGGCGAGCTGACGCTCCCCGACGACCGCACCATCCTCGTCACGC
TCTACCTCGTCGCCGTCGCCTACATGATGGGGCTCTTTGCCATCGGCCGC
GGCGGCGGCGGCGGCGCCGGCGATTGCGATGACGACGACGCCGGTGTCGC
CGCTGCCGCCGCCGCGCTCGCCTCCGCCGAGTTCATGGCGGGGAAGCCTA
AGGCGCAGCTGCAGCTGGAGCTGGCGGAGGCGTGGAGTAAGATTCGGGCG
CTCGAGGAGGAGAATCGGCAGTGGGCATCCGGGGCGGCGGGCCCGGTGCG
GGCCCCGGACGGAGCCAGAGGCCAGGCGAAGGCGCCGGTGGTTGGCACGG
GGGGCTGCGGCTGCGTTGTTTCGTAAGGTAGGGAGGGGAATGCTGGCGGC
CAGTTTCAGTGGGGCAGCATGTTCGACATTTGAGCGTGGCCTCAACAATT
GGTTTGTTCTTGTTTTGAAAGGTTTTTGGTGGGCAGCGTGAGGAAGTGGA
GGTCACGGCGACGCTGTCCCCTGTGGCGGTGTTTATGATCATTCGCTCGT
TTATTCCGTTGTCGGCTGGAGCAGGGGTATCCCGTGGTAGTTTCGGCAGG
AGCAGGGGCCTCCAGTGGTCGCTGTATTATCACCATGCCGATCCGATGGT
TGGCACTATTGCCCTTCAGTGAAGTAAGTTGCGTTATTTGAATAAGATGA
AAAGCCGTTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13000:2..1714+

>mRNA_P-wetherbeei_contig13000.1.1 ID=mRNA_P-wetherbeei_contig13000.1.1|Name=mRNA_P-wetherbeei_contig13000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig13000:2..1714+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGGGCGCTGCAAGGAGCCGCAGGACGTGCTGACGCCGTTTGTAGC
GGCGGCGCTGGTGCTGCACGAGGAGAAGGCGCTCGTCGAGTTCATGGGCG
GGCTCCTCGATCCCGTCCACGTCATCGGCCGCCTCTCCATGGGTGCCATA
AGCGAAGTGAAGGCGTGCTTCCTCATGCCCGGCGAGCTGACGCTCCCCGA
CGACCGCACCATCCTCGTCACGCTCTACCTCGTCGCCGTCGCCTACATGA
TGGGGCTCTTTGCCATCGGCCGCGGCGGCGGCGGCGGCGCCGGCGATTGC
GATGACGACGACGCCGGTGTCGCCGCTGCCGCCGCCGCGCTCGCCTCCGC
CGAGTTCATGGCGGGGAAGCCTAAGGCGCAGCTGCAGCTGGAGCTGGCGG
AGGCGTGGAGTAAGATTCGGGCGCTCGAGGAGGAGAATCGGCAGTGGGCA
TCCGGGGCGGCGGGCCCGGTGCGGGCCCCGGACGGAGCCAGAGGCCAGGC
GAAGGCGCCGGTGGTTGGCACGGGGGGCTGCGGCTGCGTTGTTTCGTAA
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