mRNA_P-wetherbeei_contig12999.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12999.1.1
Unique NamemRNA_P-wetherbeei_contig12999.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12999.1.1 vs. uniprot
Match: A0A813FY25_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FY25_POLGL)

HSP 1 Score: 70.1 bits (170), Expect = 5.060e-12
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   94 IPGVLVSHNHSPSPEEYFRELRAAKFCLVFACDDPQTSRFADALAAGCIPIVINDHF 264
            IPG  +        E Y  EL+++KFCL+   DDPQ SRF DALAAGCIP+V+ND F
Sbjct:  268 IPGANILGGGKVPAETYAEELQSSKFCLILQSDDPQISRFYDALAAGCIPVVVNDEF 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12999.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A813FY25_POLGL5.060e-1254.39Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12999contigP-wetherbeei_contig12999:142..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0SXS2
PFAMsExostosin
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.09e-08
EggNOG OGs2F00R@1|root,2T18Y@2759|Eukaryota
DescriptionExostosin family
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.5247161-CDS-P-wetherbeei_contig12999:141..4261683185969.5247161-CDS-P-wetherbeei_contig12999:141..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12999 142..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12999.1.1prot_P-wetherbeei_contig12999.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12999 142..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12999.1.1

>prot_P-wetherbeei_contig12999.1.1 ID=prot_P-wetherbeei_contig12999.1.1|Name=mRNA_P-wetherbeei_contig12999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
LFLKESPPSFLSLFFVLPVRFSANIVAPQGRIPGVLVSHNHSPSPEEYFR
ELRAAKFCLVFACDDPQTSRFADALAAGCIPIVINDHFRREILL*
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mRNA from alignment at P-wetherbeei_contig12999:142..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12999.1.1 ID=mRNA_P-wetherbeei_contig12999.1.1|Name=mRNA_P-wetherbeei_contig12999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig12999:142..426+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTTCTGAAAGAATCTCCCCCCTCCTTTCTCTCCTTGTTTTTTGTTCT
TCCTGTTCGTTTCTCCGCGAACATTGTTGCCCCACAGGGCCGCATCCCGG
GAGTCTTGGTGTCGCACAACCATTCGCCGTCGCCGGAGGAATACTTCCGG
GAGCTCCGCGCCGCCAAGTTCTGCCTCGTCTTCGCCTGCGATGACCCGCA
GACCAGCCGTTTCGCCGACGCCCTCGCCGCCGGCTGCATCCCTATCGTCA
TCAACGACCACTTTAGGCGAGAAATCCTCCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12999:142..426+

>mRNA_P-wetherbeei_contig12999.1.1 ID=mRNA_P-wetherbeei_contig12999.1.1|Name=mRNA_P-wetherbeei_contig12999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig12999:142..426+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTTCTGAAAGAATCTCCCCCCTCCTTTCTCTCCTTGTTTTTTGTTCT
TCCTGTTCGTTTCTCCGCGAACATTGTTGCCCCACAGGGCCGCATCCCGG
GAGTCTTGGTGTCGCACAACCATTCGCCGTCGCCGGAGGAATACTTCCGG
GAGCTCCGCGCCGCCAAGTTCTGCCTCGTCTTCGCCTGCGATGACCCGCA
GACCAGCCGTTTCGCCGACGCCCTCGCCGCCGGCTGCATCCCTATCGTCA
TCAACGACCACTTTAGGCGAGAAATCCTCCTCTGA
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