mRNA_P-wetherbeei_contig12976.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12976.2.1
Unique NamemRNA_P-wetherbeei_contig12976.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: A0A7S2FUK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUK8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.480e-32
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            REATEIQN+QIGDGDVCR L IP+YMIFPRLF+CPT++T  FKVEFE+NLIV F DG +VTEN+PI+LYR
Sbjct:  153 REATEIQNIQIGDGDVCRNLVIPLYMIFPRLFTCPTMLTELFKVEFEVNLIVVFADGYMVTENFPIVLYR 222
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: A0A7S2MRC8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRC8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.330e-31
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    7 RQLREATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            + +REATEIQN+QIGDGDVCR L +P+YMIFPRLF+CPT++T  F+VEFE+NLIV FGDG +VTEN+PI LYR
Sbjct:  232 KTVREATEIQNIQIGDGDVCRNLVMPLYMIFPRLFTCPTMLTDSFQVEFEVNLIVVFGDGYMVTENFPIELYR 304
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: F0YB46_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB46_AURAN)

HSP 1 Score: 115 bits (289), Expect = 1.170e-29
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            REATEIQN+QI +GDVCR L IP+YMIFPRLF+CPT++T  FKVEFE+NLIV FGDG ++TEN+PI L+R
Sbjct:  236 REATEIQNIQIAEGDVCRNLVIPIYMIFPRLFTCPTMITDDFKVEFEVNLIVIFGDGYMITENFPIKLHR 305
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: A0A5D6XLT8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLT8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.930e-29
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            R+ATEIQN+QIG GDVCR LAIP+YMIFPRLF+CPT++  RFKVEFE N++V F DG ++TEN+P++LYR
Sbjct:  199 RDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAPRFKVEFEANIVVLFDDGNMITENFPLVLYR 268
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: T1KHU9_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KHU9_TETUR)

HSP 1 Score: 114 bits (284), Expect = 5.640e-29
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            R+ATEIQN+QIGDGD+CRG+ IP+YMIFPRLFSCPT++T+ FK+EFE+N+IV F D  ++TEN+PI L R
Sbjct:  230 RDATEIQNIQIGDGDICRGVPIPIYMIFPRLFSCPTLITSNFKIEFEVNVIVIFEDNHLITENFPIKLVR 299
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: UPI00158954E4 (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26C n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158954E4)

HSP 1 Score: 114 bits (284), Expect = 5.640e-29
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYRQ 228
            R+ATEIQN+QIG+G+VC GLAIP+YMIFPRLF+CPT+ T+ FK+EFE+NLIV F D  VVTEN+PIIL R 
Sbjct:  230 RDATEIQNIQIGEGNVCTGLAIPIYMIFPRLFTCPTLNTSNFKIEFEVNLIVVFEDDYVVTENFPIILKRH 300
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: K3WEV9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV9_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 7.480e-29
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            R+ATEIQN+QIG GDVCR LAIP+YMIFPRLF+CPT++ A+FKVEFE N++V F DG ++TEN+PI LYR
Sbjct:  228 RDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAAKFKVEFETNIVVLFEDGNMITENFPITLYR 297
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: UPI000C6D5C96 (Down syndrome critical region protein 3-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D5C96)

HSP 1 Score: 111 bits (278), Expect = 7.710e-29
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYR 225
            R+ATEIQN+QIG+GD+CRG+AIP+YM+FPRLF+CPT++T  FK+EFE+N++V F D  ++TEN+PI L R
Sbjct:  150 RDATEIQNIQIGEGDICRGIAIPIYMVFPRLFTCPTLITNNFKIEFEVNIVVVFEDDRLITENFPIRLTR 219
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BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: UPI0005CEDDC2 (Down syndrome critical region protein 3 homolog isoform X1 n=2 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CEDDC2)

HSP 1 Score: 113 bits (283), Expect = 7.780e-29
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYRQ 228
            R+ATEIQN+QIG+G+VC GLAIP+YMIFPRLF+CPT++T+ FKVEFE+NLIV F +  +VTEN+PIIL R 
Sbjct:  229 RDATEIQNIQIGEGNVCSGLAIPIYMIFPRLFTCPTLITSNFKVEFEVNLIVVFENDYLVTENFPIILARH 299
[Close]
BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Match: A0A7M7G7U0_NASVI (Uncharacterized protein n=2 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7G7U0_NASVI)

HSP 1 Score: 113 bits (283), Expect = 7.930e-29
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   16 REATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVEFELNLIVAFGDGCVVTENYPIILYRQ 228
            R+ATEIQN+QIG+G+VC GLAIP+YMIFPRLF+CPT+ T+ FKVEFE+NLIV F D  +VTEN+PIIL R 
Sbjct:  230 RDATEIQNIQIGEGNVCSGLAIPIYMIFPRLFTCPTLSTSNFKVEFEVNLIVVFEDDYLVTENFPIILARH 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12976.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FUK8_9STRA1.480e-3277.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2MRC8_9STRA5.330e-3172.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YB46_AURAN1.170e-2972.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6XLT8_9STRA2.930e-2970.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T1KHU9_TETUR5.640e-2968.57Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
UPI00158954E45.640e-2971.83LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]
K3WEV9_GLOUD7.480e-2971.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI000C6D5C967.710e-2964.29Down syndrome critical region protein 3-like n=1 T... [more]
UPI0005CEDDC27.780e-2970.42Down syndrome critical region protein 3 homolog is... [more]
A0A7M7G7U0_NASVI7.930e-2971.83Uncharacterized protein n=2 Tax=Pteromalinae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12976contigP-wetherbeei_contig12976:1625..1876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009037565.1
Preferred nameDSCR3
PFAMsVps26
Model size252
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0030904,GO:0030906,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098796
Exons1
Evalue1.92e-30
EggNOG OGsKOG2717@1|root,KOG2717@2759|Eukaryota
Descriptionprotein transporter activity
Cds size252
COG categoryDT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.9316657-CDS-P-wetherbeei_contig12976:1624..18761683185968.9316657-CDS-P-wetherbeei_contig12976:1624..1876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12976 1625..1876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12976.2.1prot_P-wetherbeei_contig12976.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12976 1625..1876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12976.2.1

>prot_P-wetherbeei_contig12976.2.1 ID=prot_P-wetherbeei_contig12976.2.1|Name=mRNA_P-wetherbeei_contig12976.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
ASRQLREATEIQNLQIGDGDVCRGLAIPVYMIFPRLFSCPTIVTARFKVE
FELNLIVAFGDGCVVTENYPIILYRQPREGALR*
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mRNA from alignment at P-wetherbeei_contig12976:1625..1876-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12976.2.1 ID=mRNA_P-wetherbeei_contig12976.2.1|Name=mRNA_P-wetherbeei_contig12976.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig12976:1625..1876- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGCGGCAGCTGCGCGAGGCGACCGAGATCCAAAACCTGCAGATCGG
CGACGGCGACGTCTGCCGGGGCCTGGCGATCCCCGTCTACATGATCTTTC
CGCGGCTGTTCAGCTGCCCGACGATAGTGACGGCGCGATTCAAGGTCGAA
TTCGAGCTGAATTTGATTGTTGCCTTCGGCGACGGGTGTGTCGTCACCGA
AAACTACCCCATCATCCTGTACCGCCAGCCGCGGGAGGGTGCGCTAAGAT
AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12976:1625..1876-

>mRNA_P-wetherbeei_contig12976.2.1 ID=mRNA_P-wetherbeei_contig12976.2.1|Name=mRNA_P-wetherbeei_contig12976.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig12976:1625..1876- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGCGGCAGCTGCGCGAGGCGACCGAGATCCAAAACCTGCAGATCGG
CGACGGCGACGTCTGCCGGGGCCTGGCGATCCCCGTCTACATGATCTTTC
CGCGGCTGTTCAGCTGCCCGACGATAGTGACGGCGCGATTCAAGGTCGAA
TTCGAGCTGAATTTGATTGTTGCCTTCGGCGACGGGTGTGTCGTCACCGA
AAACTACCCCATCATCCTGTACCGCCAGCCGCGGGAGGGTGCGCTAAGAT
AA
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