mRNA_P-wetherbeei_contig12974.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12974.3.1
Unique NamemRNA_P-wetherbeei_contig12974.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12974.3.1 vs. uniprot
Match: A0A7S2RFT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFT5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 GQHVVASWELDEMCRQFERDHILRVYVPLNRPLHTLSEAQKEECIVQADAHLKRHHGRGYLPQLSRDEVRRL 216
            GQHVV+ WELD MCRQFER+ IL+VY+   +    L+E +  E + QAD  +K   G+  + Q++ +EVR L
Sbjct:   27 GQHVVSRWELDTMCRQFEREDILQVYMQKGQSPSALAEEEALELLAQADTRMKVAKGKALMKQVTEEEVREL 98
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BLAST of mRNA_P-wetherbeei_contig12974.3.1 vs. uniprot
Match: A0A7S2B712_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B712_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.740e-13
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 GQHVVASWELDEMCRQFERDHILRVYVPLNRPLHTLSEAQKEECIVQADAHLKRHHGRGYLPQLSRDEV 207
            GQHVV +WELD MCRQFER+ IL++Y+   +    L+E Q EE + QAD+ LK   G+  + Q++ +EV
Sbjct:   43 GQHVVGNWELDTMCRQFEREDILQIYMLPGQTHSNLTEDQAEEILAQADSRLKVAKGKAMMKQVTPEEV 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12974.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2RFT5_9STRA1.220e-1345.83Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2B712_9STRA3.740e-1347.83Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12974contigP-wetherbeei_contig12974:1688..1906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT36
PFAMsNDK
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.76e-20
EggNOG OGs2CN2N@1|root,2QTJA@2759|Eukaryota
Ec32 ortholog descriptionaspartyl protease family A01A, putative
Ec32 orthologEc-04_002690.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.8572981-CDS-P-wetherbeei_contig12974:1687..19061683185968.8572981-CDS-P-wetherbeei_contig12974:1687..1906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12974 1688..1906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12974.3.1prot_P-wetherbeei_contig12974.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12974 1688..1906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12974.3.1

>prot_P-wetherbeei_contig12974.3.1 ID=prot_P-wetherbeei_contig12974.3.1|Name=mRNA_P-wetherbeei_contig12974.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
GQHVVASWELDEMCRQFERDHILRVYVPLNRPLHTLSEAQKEECIVQADA
HLKRHHGRGYLPQLSRDEVRRLL
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mRNA from alignment at P-wetherbeei_contig12974:1688..1906-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12974.3.1 ID=mRNA_P-wetherbeei_contig12974.3.1|Name=mRNA_P-wetherbeei_contig12974.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12974:1688..1906- (Phaeothamnion wetherbeei SAG_119_79)
GGCCAGCACGTCGTCGCCAGCTGGGAGCTGGACGAAATGTGCCGACAGTT
CGAGCGGGATCACATCCTTCGGGTCTATGTGCCCCTGAACCGTCCGCTGC
ACACCCTCAGTGAGGCGCAAAAGGAGGAGTGCATCGTGCAAGCCGACGCA
CACCTAAAGCGCCACCACGGCCGCGGCTACCTGCCCCAGCTTTCGCGTGA
CGAAGTTCGGCGACTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12974:1688..1906-

>mRNA_P-wetherbeei_contig12974.3.1 ID=mRNA_P-wetherbeei_contig12974.3.1|Name=mRNA_P-wetherbeei_contig12974.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12974:1688..1906- (Phaeothamnion wetherbeei SAG_119_79)
GGCCAGCACGTCGTCGCCAGCTGGGAGCTGGACGAAATGTGCCGACAGTT
CGAGCGGGATCACATCCTTCGGGTCTATGTGCCCCTGAACCGTCCGCTGC
ACACCCTCAGTGAGGCGCAAAAGGAGGAGTGCATCGTGCAAGCCGACGCA
CACCTAAAGCGCCACCACGGCCGCGGCTACCTGCCCCAGCTTTCGCGTGA
CGAAGTTCGGCGACTGCTG
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