mRNA_P-wetherbeei_contig12966.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12966.1.1
Unique NamemRNA_P-wetherbeei_contig12966.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12966.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12966contigP-wetherbeei_contig12966:2..1699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1360
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010060.1
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.4612613-CDS-P-wetherbeei_contig12966:1..1381683185968.4612613-CDS-P-wetherbeei_contig12966:1..138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12966 2..138 +
1683185968.4709284-CDS-P-wetherbeei_contig12966:324..6961683185968.4709284-CDS-P-wetherbeei_contig12966:324..696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12966 325..696 +
1683185968.4803138-CDS-P-wetherbeei_contig12966:848..10531683185968.4803138-CDS-P-wetherbeei_contig12966:848..1053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12966 849..1053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.4892523-UTR-P-wetherbeei_contig12966:1053..16991683185968.4892523-UTR-P-wetherbeei_contig12966:1053..1699Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12966 1054..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12966.1.1prot_P-wetherbeei_contig12966.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12966 2..1053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12966.1.1

>prot_P-wetherbeei_contig12966.1.1 ID=prot_P-wetherbeei_contig12966.1.1|Name=mRNA_P-wetherbeei_contig12966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
PLLTQWVTKSNRQGAPRQLGRSRLDNNQPLLDLLKSVLVSPDSAAGPARP
RSPPQCTHYVPREAQPPRTPPSSHGGGGRISAGGAGRPANPRQFAEPPPG
PATPGEAAAAAATPAAAASAAPFTQAKPAHRPAARAAAPAEAARRDEREQ
DVRVCGLLRVRGTLIALVEGGGGDGGSGRGDDGSGGGGTSGSGSSSGGAE
GIWRSFVSSAEVRQRWPEAYMNYLERHVVFEDAAGVL*
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mRNA from alignment at P-wetherbeei_contig12966:2..1699+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12966.1.1 ID=mRNA_P-wetherbeei_contig12966.1.1|Name=mRNA_P-wetherbeei_contig12966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig12966:2..1699+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTGTTGACGCAGTGGGTAACGAAAAGCAATCGCCAGGGAGCGCCGAG
GCAGCTTGGCCGCAGCAGGCTGGATAACAATCAGCCTTTGCTGGACCTCC
TGAAGAGCGTGCTTGTTTCGCCTGATTCGGCTGCAGGGTGAGTCGCCATC
CGTTAACTTCAAACTTCGAACGTCAAAAAATTATAGCAAAGAAGACTCTC
TTGCCTTCACTTCCTTCTCTTGCCCCTGGCACATCGAAGCACGGTAACCG
CTGCGCCTGTTGGGGAAGATTTGCACCTCTCAGATGCGTCGCGCCTTTAT
CTTCCCTTCTCCTTGTACACCAGGCCCGCCCGCCCACGATCGCCTCCGCA
ATGCACTCACTACGTGCCGAGGGAGGCACAACCGCCGCGCACGCCGCCTT
CCTCCCACGGCGGAGGAGGCCGCATATCAGCAGGCGGCGCCGGTCGACCC
GCCAATCCGCGTCAGTTTGCAGAGCCGCCGCCAGGGCCAGCAACGCCGGG
GGAGGCGGCGGCAGCGGCAGCAACACCAGCAGCGGCCGCTTCCGCAGCGC
CATTCACTCAAGCGAAGCCGGCTCACAGGCCGGCGGCAAGAGCGGCGGCG
CCTGCGGAAGCCGCCCGGCGCGACGAAAGAGAGCAAGACGTTCGCGTCTG
CGGCCTCCTCCGAGTGCGAGGCACGCTGATCGCCCTTGTAGAAGGGTGAG
TGTCCGCTCCAGCGGTGCGAGCTTGTTTTCCCCCCCATGTCATGGCCCAT
TCCGAGGCGTCATTTTGAAACACAATGTTTCTGGCTCCTGACCCTTCTCT
TCGCTGCCTCGTCATGGCACCGTGCCTTGGCGTGTCTGTTATTCCAGGGG
CGGCGGCGACGGGGGCAGTGGCCGCGGTGACGATGGCAGTGGTGGCGGCG
GCACCAGCGGCAGCGGCAGCAGCAGTGGCGGCGCTGAGGGCATCTGGCGC
TCGTTCGTGTCGTCGGCAGAGGTGCGCCAGCGCTGGCCGGAGGCTTACAT
GAACTACCTAGAGCGCCACGTTGTGTTTGAGGACGCTGCCGGGGTACTGT
GACAGTCATGTCATCACTGACGTTCTTGTCGGCGCTGTCTGACTGACGGC
ACTAGCCGAATGTGGCAGGCGGCGACGACACCGGCATGCACGGCGTGCAC
CACACAGCGGCGGGGCGTGTGCCAGTAGTGGGCGGCTGCACGAGCAAGAG
AGGGACGGAAATGAGAATGGCAAAAAGGCTGTGGGACAAGCACATTAGTG
GCACCATTCGGCATTTGGGGTATAGAACTGCCTTACATCCTATAGGTTCC
CGACAAGGCGGGGACAAGGCGGGGAGACTCACGCGGTCGGTCGGCCAGAA
CCACGTTCATCCATAACTTGCGGCACTATATGTCTTTTGCTAAAGAAAGA
GAAGGACAAAGGGAGTCAGCTAGGCGCGCTGCGATCATCGATCGCTCTCT
GCTACTCGACGCAGGGCGGCGCGCACACGCGCTGCCTCAGCGTGACAGGG
AGAATGTGGCTGGATCGCCGACACAGGACGCGCAGCGATTCGTCGAAGGC
ACGAAATGGCATGAAAGGTGGAGAGGCCGCCGCAAAGAGGAGAAACCGGC
ACGTTGAAACGACGAAAATATCGAAGGGGAAAGAAGCACACAGTACATAC
ACGTGGATTGGCTGGTACCACGATGCAGTATGGCTAAAAAAAGTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12966:2..1699+

>mRNA_P-wetherbeei_contig12966.1.1 ID=mRNA_P-wetherbeei_contig12966.1.1|Name=mRNA_P-wetherbeei_contig12966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig12966:2..1699+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTGTTGACGCAGTGGGTAACGAAAAGCAATCGCCAGGGAGCGCCGAG
GCAGCTTGGCCGCAGCAGGCTGGATAACAATCAGCCTTTGCTGGACCTCC
TGAAGAGCGTGCTTGTTTCGCCTGATTCGGCTGCAGGGCCCGCCCGCCCA
CGATCGCCTCCGCAATGCACTCACTACGTGCCGAGGGAGGCACAACCGCC
GCGCACGCCGCCTTCCTCCCACGGCGGAGGAGGCCGCATATCAGCAGGCG
GCGCCGGTCGACCCGCCAATCCGCGTCAGTTTGCAGAGCCGCCGCCAGGG
CCAGCAACGCCGGGGGAGGCGGCGGCAGCGGCAGCAACACCAGCAGCGGC
CGCTTCCGCAGCGCCATTCACTCAAGCGAAGCCGGCTCACAGGCCGGCGG
CAAGAGCGGCGGCGCCTGCGGAAGCCGCCCGGCGCGACGAAAGAGAGCAA
GACGTTCGCGTCTGCGGCCTCCTCCGAGTGCGAGGCACGCTGATCGCCCT
TGTAGAAGGGGGCGGCGGCGACGGGGGCAGTGGCCGCGGTGACGATGGCA
GTGGTGGCGGCGGCACCAGCGGCAGCGGCAGCAGCAGTGGCGGCGCTGAG
GGCATCTGGCGCTCGTTCGTGTCGTCGGCAGAGGTGCGCCAGCGCTGGCC
GGAGGCTTACATGAACTACCTAGAGCGCCACGTTGTGTTTGAGGACGCTG
CCGGGGTACTGTGA
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