mRNA_P-wetherbeei_contig12948.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12948.2.1
Unique NamemRNA_P-wetherbeei_contig12948.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A836CN59_9STRA (Tryptophan/tyrosine permease family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN59_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1
Query:    4 NIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
             + +AAALV GNMVGAG+LALP VTA PGF+P+++A+V VWG+CLLTG
Sbjct:  119 EVLNAAALVGGNMVGAGILALPTVTAAPGFVPAASAMVGVWGFCLLTG 166          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: D7FW44_ECTSI (Aromatic amino acid permease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW44_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.910e-11
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G+I S +ALVAGNM+GAGVLALP+VT  PGF+ SS A+V VWGYCL +G
Sbjct:   69 GSILSNSALVAGNMIGAGVLALPSVTGAPGFVLSSTAMVVVWGYCLCSG 117          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A2V3IL52_9FLOR (Tyrosine-specific transport protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL52_9FLOR)

HSP 1 Score: 58.9 bits (141), Expect = 7.260e-9
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   22 ALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            ALVAG M+GAGVLALP VTA  GFLPSSAAL+AVW Y L TG
Sbjct:   92 ALVAGTMIGAGVLALPTVTAPAGFLPSSAALLAVWLYMLTTG 133          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A2P6VNI5_9CHLO (Tyrosine-specific transport n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNI5_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G +  AAALVAG  VGAG+LALP VTA  GF+PS+AAL A  GY +LTG
Sbjct: 1388 GTVWGAAALVAGTTVGAGILALPTVTAGAGFVPSAAALAAFCGYNMLTG 1436          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A7R9TFX3_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFX3_9VIRI)

HSP 1 Score: 53.9 bits (128), Expect = 4.220e-7
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G++  A  LV+G  VGAGVLALPAVTA  GF+PS+AALV  W Y   TG
Sbjct:    9 GSVWGATVLVSGTAVGAGVLALPAVTAPAGFVPSTAALVGCWAYMAATG 57          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A0V7ZM84_9CYAN (Tyrosine transporter n=2 Tax=Mastigocoleus TaxID=996924 RepID=A0A0V7ZM84_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 5.810e-7
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G++  +AAL+AGN VGAG+LALPAVT   G +PS+A L AVW Y L++G
Sbjct:   27 GSVFGSAALLAGNTVGAGILALPAVTLPSGIVPSTALLFAVWLYVLISG 75          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A8J7DHV4_9CYAN (Tyrosine transporter n=4 Tax=Nostocales TaxID=1161 RepID=A0A8J7DHV4_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 5.810e-7
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G++  + AL+AG  VGAG+LALPAVT   G LPS+A L+AVW Y L++G
Sbjct:   31 GSVLGSTALIAGTTVGAGILALPAVTLPSGILPSTALLIAVWLYALVSG 79          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A1X6PI55_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PI55_PORUM)

HSP 1 Score: 53.5 bits (127), Expect = 5.830e-7
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVW 126
            G+ A+AAALVAG  VGAGVLALPAVTA  GF PSSAAL  VW
Sbjct:  174 GSTAAAAALVAGTTVGAGVLALPAVTASSGFGPSSAALAGVW 215          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: A0A1Z4LNK9_9CYAN (Aromatic amino acid permease n=1 Tax=Calothrix parasitica NIES-267 TaxID=1973488 RepID=A0A1Z4LNK9_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.950e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G++  + AL+AG  VGAG+LALPAVT   G LPS+A L+ VW Y +LTG
Sbjct:   31 GSVVGSTALIAGTTVGAGILALPAVTLPSGVLPSTALLIGVWLYTVLTG 79          
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Match: K9WZ78_9NOST (Amino acid permease n=2 Tax=Cylindrospermum TaxID=56106 RepID=K9WZ78_9NOST)

HSP 1 Score: 53.1 bits (126), Expect = 7.950e-7
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG 147
            G++  + AL+AG  VGAG+LALPAVT   G LPS+A L+AVW Y L++G
Sbjct:   31 GSVLGSTALIAGTTVGAGILALPAVTLPSGVLPSTALLIAVWLYALVSG 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12948.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN59_9STRA1.580e-1268.75Tryptophan/tyrosine permease family-domain-contain... [more]
D7FW44_ECTSI1.910e-1169.39Aromatic amino acid permease n=2 Tax=Ectocarpus Ta... [more]
A0A2V3IL52_9FLOR7.260e-978.57Tyrosine-specific transport protein 1 n=1 Tax=Grac... [more]
A0A2P6VNI5_9CHLO1.670e-765.31Tyrosine-specific transport n=1 Tax=Micractinium c... [more]
A0A7R9TFX3_9VIRI4.220e-761.22Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A0V7ZM84_9CYAN5.810e-759.18Tyrosine transporter n=2 Tax=Mastigocoleus TaxID=9... [more]
A0A8J7DHV4_9CYAN5.810e-757.14Tyrosine transporter n=4 Tax=Nostocales TaxID=1161... [more]
A0A1X6PI55_PORUM5.830e-776.19Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1Z4LNK9_9CYAN7.950e-757.14Aromatic amino acid permease n=1 Tax=Calothrix par... [more]
K9WZ78_9NOST7.950e-757.14Amino acid permease n=2 Tax=Cylindrospermum TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12948contigP-wetherbeei_contig12948:1440..1586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FW44
PFAMsTrp_Tyr_perm
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.14e-12
EggNOG OGsCOG0814@1|root,2QSPD@2759|Eukaryota
DescriptionTryptophan/tyrosine permease family
Cds size147
COG categoryE
BiGG ReactioniEC55989_1330.EC55989_3581,iECO103_1326.ECO103_3910,iECO111_1330.ECO111_3985,iECO26_1355.ECO26_4267,iECSE_1348.ECSE_3447,iEcE24377_1341.EcE24377A_3643,iSSON_1240.SSON_3307
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185967.5978136-CDS-P-wetherbeei_contig12948:1439..15861683185967.5978136-CDS-P-wetherbeei_contig12948:1439..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12948 1440..1586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12948.2.1prot_P-wetherbeei_contig12948.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12948 1440..1586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12948.2.1

>prot_P-wetherbeei_contig12948.2.1 ID=prot_P-wetherbeei_contig12948.2.1|Name=mRNA_P-wetherbeei_contig12948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
GNIASAAALVAGNMVGAGVLALPAVTAVPGFLPSSAALVAVWGYCLLTG
back to top

mRNA from alignment at P-wetherbeei_contig12948:1440..1586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12948.2.1 ID=mRNA_P-wetherbeei_contig12948.2.1|Name=mRNA_P-wetherbeei_contig12948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig12948:1440..1586+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACATTGCCTCCGCTGCGGCCCTTGTGGCGGGCAATATGGTCGGGGC AGGGGTCCTCGCGCTGCCGGCGGTGACTGCTGTGCCGGGATTCCTTCCGT CCTCCGCTGCGCTCGTCGCCGTGTGGGGCTATTGCTTGCTGACAGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12948:1440..1586+

>mRNA_P-wetherbeei_contig12948.2.1 ID=mRNA_P-wetherbeei_contig12948.2.1|Name=mRNA_P-wetherbeei_contig12948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig12948:1440..1586+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACATTGCCTCCGCTGCGGCCCTTGTGGCGGGCAATATGGTCGGGGC
AGGGGTCCTCGCGCTGCCGGCGGTGACTGCTGTGCCGGGATTCCTTCCGT
CCTCCGCTGCGCTCGTCGCCGTGTGGGGCTATTGCTTGCTGACAGGC
back to top