mRNA_P-wetherbeei_contig12874.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12874.1.1
Unique NamemRNA_P-wetherbeei_contig12874.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: F0XVW2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVW2_AURAN)

HSP 1 Score: 157 bits (396), Expect = 1.530e-44
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDRAGGD 399
            WR++LH+VDI+CC AILFPIVWSIRHLR+A   DGK  N + KL LFRQFYIMV +YIYFTR                +VVFLLA  LPF+  WL+ + +E A  +FYV TG KFRP +DNPYLP+ +  GD
Sbjct:  142 WRDVLHLVDIICCCAILFPIVWSIRHLREAAAADGKTRNNIAKLTLFRQFYIMVVTYIYFTR----------------IVVFLLAATLPFQWLWLRYVFSEGATLLFYVVTGYKFRPAEDNPYLPLKKGDGD 257
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: A0A7S1TRA5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRA5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.320e-42
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:    1 QWRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDRAGGD 399
            QWR++LH+VDI+CC AILFPIVWSIRHLRQ   TDGK    + +L+ FR FYIMV SYIYFTR                +VV+L A  +PF+L+WL+  + EAA  +FYV TG+KFRP +DNPY+ + +   D
Sbjct:   48 QWRDVLHLVDIICCCAILFPIVWSIRHLRQGAGTDGKMAANLNRLETFRYFYIMVISYIYFTR----------------IVVYLTAAVIPFQLSWLKVFLEEAATLLFYVLTGVKFRPAEDNPYVKLSQEDDD 164
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: A0A6U1QGM8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QGM8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.870e-40
Identity = 74/129 (57.36%), Postives = 87/129 (67.44%), Query Frame = 1 
Query:    1 QWRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDR 387
             WR+ILH+VDIVCC A+LFPIVWSI+HLRQA  TDGKA   + KL LFR FYIMV +YIYFTR                +V+FLLA  L F+L WL+ L TE A  +F+  TG KFRP   NPYLPVD+
Sbjct:  167 NWRDILHLVDIVCCCAVLFPIVWSIKHLRQAAGTDGKAGAMLSKLSLFRGFYIMVVTYIYFTR----------------IVIFLLAATLSFKLLWLRTLFTELATLIFFTYTGYKFRPQAQNPYLPVDK 279
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: A0A7S1TRC1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRC1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.040e-38
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:    1 QWRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDRAGGD 399
            QWR++LH+VDI+CC AILFPIVWSIRHLRQ   TDGK    + +L+ FR FYIMV SYIYFTR                +VV+L A  +PF+L+WL+  + EAA  +FYV TG+KFRP +DNPY+ + +   D
Sbjct:  383 QWRDVLHLVDIICCCAILFPIVWSIRHLRQGAGTDGKMAANLNRLETFRYFYIMVISYIYFTR----------------IVVYLTAAVIPFQLSWLKVFLEEAATLLFYVLTGVKFRPAEDNPYVKLSQEDDD 499
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: A0A1Y1I7S0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7S0_KLENI)

HSP 1 Score: 144 bits (362), Expect = 4.320e-38
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVD 384
            WR+ILH+VDIVCC AILFPIVWSI+HLR+A  TDGKA   + KL LFRQFY+MV SYIYFTR                +VV+LL    P+  AW   L  +AAA +FYV TG KFRPV+ NPY  +D
Sbjct:  310 WRDILHLVDIVCCCAILFPIVWSIKHLREAASTDGKAARNLIKLTLFRQFYVMVVSYIYFTR----------------IVVYLLKSTTPYHYAWTADLADQAAALLFYVLTGYKFRPVEQNPYFVLD 420
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: K8Z909_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z909_NANGC)

HSP 1 Score: 144 bits (363), Expect = 7.090e-38
Identity = 72/127 (56.69%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVD 384
            WR+I H++DIVCC AILFPIVWSIRHLRQA   DGK E+ +RKL LFRQFY+MV +YIYFTR                +VVFL+   LP++L WLQ    E A  +FY  TG KF P D NPYL VD
Sbjct:  319 WRDIFHLIDIVCCCAILFPIVWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTR----------------IVVFLVKATLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVD 429
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: W7TWZ9_9STRA (Transmembrane receptor, eukaryota n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWZ9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 9.110e-38
Identity = 72/127 (56.69%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVD 384
            WR+I H++DIVCC AILFPIVWSIRHLRQA   DGK E+ +RKL LFRQFY+MV +YIYFTR                +VVFL+   LP++L WLQ    E A  +FY  TG KF P D NPYL VD
Sbjct:  338 WRDIFHLIDIVCCCAILFPIVWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTR----------------IVVFLVKATLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVD 448
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: Q6XA11_BRAFL (Lung seven transmembrane receptor-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=Q6XA11_BRAFL)

HSP 1 Score: 135 bits (339), Expect = 5.230e-36
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDR 387
            WR +  +VD++CC AILFP+VWSIRHL++A QTDGKA  +++KLKLFR FY+M+  YIYFTR                ++V+LL + +PF+  WL Q   E A  VF+V TG KFRP  +NPYL V +
Sbjct:  128 WREVFILVDLLCCGAILFPVVWSIRHLQEASQTDGKAAISLQKLKLFRHFYVMIVCYIYFTR----------------IIVYLLKITVPFQYEWLGQFFAELATYVFFVMTGYKFRPASNNPYLQVSQ 239
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: A0A812UH70_SYMMI (Gpr107 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH70_SYMMI)

HSP 1 Score: 132 bits (332), Expect = 6.240e-36
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVDRAGGD 399
            WR++LH+VDI CC AIL+PI WSI H RQA + DGKA + ++KL+LFRQFY+MV  YIYFTR                V+VFL+   +PF + WL QL  E    +F+  TG KF+P  DN Y+ V+   GD
Sbjct:   43 WRDLLHLVDIACCIAILYPIFWSINHFRQAAEADGKARDNLQKLQLFRQFYVMVLCYIYFTR----------------VIVFLITATVPFYVQWLGQLCLELGTLLFFAITGYKFQPAYDNAYMKVESDEGD 158
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BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Match: T1GH48_MEGSC (Uncharacterized protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GH48_MEGSC)

HSP 1 Score: 131 bits (330), Expect = 6.910e-36
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:    4 WRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQFYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLVTEAAAAVFYVATGIKFRPVDDNPYLPVD 384
            WR I  +VD++CC AILFP+VWSIRHL +A  TDGKA   ++KLKLFRQFYIM+  YIYFTR                ++V+LL + + F+ AWL ++  E A  VF+V TG KFRP+  +PY  VD
Sbjct:   30 WREIFILVDLLCCGAILFPVVWSIRHLHEASATDGKAAINLKKLKLFRQFYIMIVCYIYFTR----------------IIVYLLRITVAFQYAWLDEMFHEMATYVFFVLTGYKFRPLPQHPYFQVD 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0XVW2_AURAN1.530e-4456.82Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1TRA5_9STRA8.320e-4252.63Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U1QGM8_9STRA2.870e-4057.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TRC1_9STRA1.040e-3852.63Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1Y1I7S0_KLENI4.320e-3856.69Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
K8Z909_NANGC7.090e-3856.69Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
W7TWZ9_9STRA9.110e-3856.69Transmembrane receptor, eukaryota n=2 Tax=Monodops... [more]
Q6XA11_BRAFL5.230e-3650.00Lung seven transmembrane receptor-like n=1 Tax=Bra... [more]
A0A812UH70_SYMMI6.240e-3648.48Gpr107 protein n=1 Tax=Symbiodinium microadriaticu... [more]
T1GH48_MEGSC6.910e-3650.39Uncharacterized protein n=1 Tax=Megaselia scalaris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12874contigP-wetherbeei_contig12874:15..1331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009032677.1
Preferred nameGPR107
PFAMsLung_7-TM_R
Model size483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0006810,GO:0006897,GO:0006898,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0030135,GO:0030136,GO:0030276,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032050,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0070013,GO:0072583,GO:0097708,GO:0098657
Exons4
Evalue2.51e-45
EggNOG OGsKOG2569@1|root,KOG2569@2759|Eukaryota
Descriptionclathrin heavy chain binding
Cds size483
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.618006-CDS-P-wetherbeei_contig12874:14..1811683185964.618006-CDS-P-wetherbeei_contig12874:14..181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12874 15..181 -
1683185964.6293685-CDS-P-wetherbeei_contig12874:521..6011683185964.6293685-CDS-P-wetherbeei_contig12874:521..601Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12874 522..601 -
1683185964.6385386-CDS-P-wetherbeei_contig12874:817..9761683185964.6385386-CDS-P-wetherbeei_contig12874:817..976Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12874 818..976 -
1683185964.6478531-CDS-P-wetherbeei_contig12874:1254..13311683185964.6478531-CDS-P-wetherbeei_contig12874:1254..1331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12874 1255..1331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12874.1.1prot_P-wetherbeei_contig12874.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12874 15..1331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12874.1.1

>prot_P-wetherbeei_contig12874.1.1 ID=prot_P-wetherbeei_contig12874.1.1|Name=mRNA_P-wetherbeei_contig12874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
QWRNILHVVDIVCCAAILFPIVWSIRHLRQAVQTDGKAENTVRKLKLFRQ
FYIMVFSYIYFTRRAAGETVSRKEAPQGSVVVFLLAVALPFELAWLQQLV
TEAAAAVFYVATGIKFRPVDDNPYLPVDRAGGDEDDEDEEENGGGGGGYA
EGGDLLDRDRP
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mRNA from alignment at P-wetherbeei_contig12874:15..1331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12874.1.1 ID=mRNA_P-wetherbeei_contig12874.1.1|Name=mRNA_P-wetherbeei_contig12874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1317bp|location=Sequence derived from alignment at P-wetherbeei_contig12874:15..1331- (Phaeothamnion wetherbeei SAG_119_79)
CAATGGCGCAACATCCTCCATGTGGTGGACATCGTGTGCTGTGCAGCAAT
TCTCTTCCCCATCGTCTGGAGCATCAGGTGCATCGAAAGATTGCATTTGA
TCGCATGCCCATTGCCCGCGGTCGCCGCCGCTGCCGCCACATGATTGATC
CGGACCGTTCCCTTTCAAAGACGGCCGGGGGTTCATCTAAAGTGCCGTCT
GAAGTTGTGTCCGATCTCTTCAACCTGCCTTTCGACCGGCTGCCCACGTC
GACGGCTTTCCTGTTTGTTTATCTAAGTTGTGCTTTTGCCGTTGCCGTTG
CTGCCACCGCCGCTGCACCCCGCCTGTCCCCGCCCGGCTGCCTGGCTGCC
TGCAGACACCTCCGGCAGGCCGTCCAGACGGATGGCAAGGCGGAGAACAC
CGTCCGCAAGCTCAAGCTCTTCCGGCAGTTCTACATCATGGTCTTCAGCT
ACATTTACTTCACTAGGCGAGCAGCTGGCGAGACAGTCAGCAGGAAGGAA
GCCCCACAGGGCTCGTAGTTCTGCTTTTCCCTTCTGTTTTTGACCTTCCT
GTCATATCCCGAGGTGTGTGACACGTTTCTTTGGCTGATTGCTGTACCAT
TTGTTGTGACTGGGTTTTGAATTCCTTAAGTTGCGTGCCCCAGCGCTACG
CCCCTATCTACTCCCCGCCTTGGCCGCTGATAATCAAGCCAATGTCGCCG
GCGGGAAATTCGCTGAAATTCCAATTGCAGGGTGGTTGTGTTTCTTCTAG
CGGTAGCTCTACCGTTCGAGCTCGCGTGGCTGCAGCAACTTGTCACCGAG
GCGGCCGCAGGTGAGCAAGGCTCCCTTTTTTTTGCTGTCTGTTGCGCGCT
TTCGGCTACAAATGCCGGCACTTGGGGTACCAGATGTCCAGTTATGGGAT
ACACTCCACTGTTCCAAGTTTCTTTCCGCGGAAGAGGGCTTAGAAGACAG
AACTAACCGTAGCCTTACGTTCTTAAAAGTAAGGTCTGCCAGTTAGCATG
AAGAAGGCGTGGAAATCCTGATAGTGCAGCAATGCAGCAGCAGGAGCTCC
TCTGCTCGAAGCGCAAATACAGAAAACGATACCGAAAAAGCTGTCCTGGC
TGATCCGCCTCAAAACTTTCGTGCCTCTCTCCATCGCACGAATGGCGCAG
CCGTCTTCTATGTGGCGACGGGCATAAAGTTCCGCCCCGTGGACGACAAT
CCGTACCTGCCGGTTGATCGCGCTGGCGGAGACGAAGACGACGAGGACGA
GGAGGAAAACGGCGGCGGCGGCGGCGGATACGCGGAGGGGGGCGACCTAC
TGGATCGCGACCGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12874:15..1331-

>mRNA_P-wetherbeei_contig12874.1.1 ID=mRNA_P-wetherbeei_contig12874.1.1|Name=mRNA_P-wetherbeei_contig12874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig12874:15..1331- (Phaeothamnion wetherbeei SAG_119_79)
CAATGGCGCAACATCCTCCATGTGGTGGACATCGTGTGCTGTGCAGCAAT
TCTCTTCCCCATCGTCTGGAGCATCAGACACCTCCGGCAGGCCGTCCAGA
CGGATGGCAAGGCGGAGAACACCGTCCGCAAGCTCAAGCTCTTCCGGCAG
TTCTACATCATGGTCTTCAGCTACATTTACTTCACTAGGCGAGCAGCTGG
CGAGACAGTCAGCAGGAAGGAAGCCCCACAGGGCTCGGTGGTTGTGTTTC
TTCTAGCGGTAGCTCTACCGTTCGAGCTCGCGTGGCTGCAGCAACTTGTC
ACCGAGGCGGCCGCAGCCGTCTTCTATGTGGCGACGGGCATAAAGTTCCG
CCCCGTGGACGACAATCCGTACCTGCCGGTTGATCGCGCTGGCGGAGACG
AAGACGACGAGGACGAGGAGGAAAACGGCGGCGGCGGCGGCGGATACGCG
GAGGGGGGCGACCTACTGGATCGCGACCGCCCG
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