mRNA_P-wetherbeei_contig12847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12847.1.1
Unique NamemRNA_P-wetherbeei_contig12847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12847.1.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.510e-16
Identity = 76/272 (27.94%), Postives = 109/272 (40.07%), Query Frame = 1 
Query:  319 WTAGQLADVQYYSLTRHFVNEQ*ELVSLALNCVKHVGGTCASDLVCIVEEHATRAVVT--VINFTTDCDPSMVAAGRATQ-----FSHSGCLARRLEMVTGIFFDGPREAA*PFSFFLFEVVLLFHLETLQLLLFSNRLPANICKLPPSLPLLLSMIAVHRLAGIANTMKTFWALASTFNKFTQSTARLTMACGVAGIAHKKIMQDVETRWWSIFVLCNSA*HLKPALVLIIIDGFVVP--TATQWEICRHGMLLLEPYMEVESMCESSSYV 1107
            WT+    +  Y SLT  +++ + +L  L+L+C KH G T   DL  +V     R  +T  VI   TDC+PSM+ AGR  +      SH GC   R+E  T   F+G    A                                                    G+A T      L   + K +Q  ARL   CG+  +    +MQDVETRWWS + +     +L  A+ L      V P  + T WE+ R    +L P+M+ +   E + YV
Sbjct:   48 WTSRN--NESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLGA---------------------------------------------------LGLART------LVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYV 260
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BLAST of mRNA_P-wetherbeei_contig12847.1.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.140e-14
Identity = 69/274 (25.18%), Postives = 107/274 (39.05%), Query Frame = 1 
Query:  319 WTAGQLADVQYYSLTRHFVNEQ*ELVSLALNCVKHVGGTCASDLV----CIVEEHATRAVVTVINFTTDCDPSMVAAGR-----ATQFSHSGCLARRLEMVTGIFFDGPREAA*PFSFFLFEVVLLFHLETLQLLLFSNRLPANICKLPPSLPLLLSMIAVHRLAGIANTMKTFWALASTFNKFTQSTARLTMACGVAGIAHKKIMQDVETRWWSIFVLCNSA*HLKPALVLIIIDGFVVP--TATQWEICRHGMLLLEPYMEVESMCESSSYV 1107
            WT+   ++  Y SLT  +++   +L  L+LNC KH G T   DL      ++E H     VT     TDC+PSMV AGR      +   H GC   R+E  T   F+G                                                       L  +A       A+   + + +Q + RL +  G+  ++   ++QDVETRWWS + +     +L  A+ L      + P  + T WE+ R    +L P+M+ +   E + YV
Sbjct:   84 WTSR--SNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTAC--VTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNG-----------------------------------------------------KSLGALAKAR----AVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYV 296
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BLAST of mRNA_P-wetherbeei_contig12847.1.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.490e-12
Identity = 67/272 (24.63%), Postives = 108/272 (39.71%), Query Frame = 1 
Query:  319 WTAGQLADVQYYSLTRHFVNEQ*ELVSLALNCVKHVGGTCASDLVCIVEEHATRAVVT--VINFTTDCDPSMVAAGRATQ----FSHSGCLARRLEMVTGIFFDGPREAA*PFSFFLFEVVLLFHLETLQLLLFSNRLPANICKLPPSLPLLLSMIAVHRLAGIANTMKTFWALASTFNKFTQSTARLTMACGVAGIAHKKIMQDVETRWWSIFV-LCNSA*HLKPALVLIIIDGFVVPTATQ--WEICRHGMLLLEPYMEVESMCESSSYV 1107
            WT+       Y++ T  +++   +LV+L + C KH G T   DLV  V+    R  +T   +  TTDC+PSMV AGR  +     +H GC   RLE +T   F GP                                                        G++  +     + + +N  +Q++ RL     +  +  KK++QDVETRWWS +  +C      +P      ID  + P   +  WE+ +    L +P++  +   E+S  V
Sbjct:   57 WTSASNDTYMYFTCT--YISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGP--------------------------------------------------------GVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDS-IPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDV 269
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BLAST of mRNA_P-wetherbeei_contig12847.1.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.440e-10
Identity = 64/259 (24.71%), Postives = 96/259 (37.07%), Query Frame = 1 
Query:  349 YYSLTRHFVNEQ*ELVSLALNCVKHVGGTCASDLVCIVEEHATRAVVT--VINFTTDCDPSMVAAGRATQ----FSHSGCLARRLEMVTGIFFDGPREAA*PFSFFLFEVVLLFHLETLQLLLFSNRLPANICKLPPSLPLLLSMIAVHRLAGIANTMKTFWALASTFNKFTQSTARLTMACGVAGIAHKKIMQDVETRWWSIFVLCNSA*HLKPALVLIIIDGFVVPTATQWEICRHGMLLLEPYMEVESMCESSSYV 1107
            Y + T  +++   +LV+L L   KH G T   DLV  V+    R  +T   +  TTDC+P MV AGR  +     SH GC   R E +T   F GP                                                        G++  +     + + +   +Q++ RL   C +  +  KK++QDVETRWWS     +S   + P L               WE+ +    LL P+M  +   E+S  V
Sbjct:    9 YMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGP--------------------------------------------------------GVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTPREIDS---IPPLL-----------NEKDWEVLQLVEPLLHPFMTAQKHLEASKGV 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.510e-1627.94Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE4.140e-1425.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE7.490e-1224.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE3.440e-1024.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12847contigP-wetherbeei_contig12847:2..1895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size1704
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue5.23e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size573
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.6132104-UTR-P-wetherbeei_contig12847:1..901683185963.6132104-UTR-P-wetherbeei_contig12847:1..90Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12847 2..90 -
1683185963.6383026-UTR-P-wetherbeei_contig12847:853..18951683185963.6383026-UTR-P-wetherbeei_contig12847:853..1895Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12847 854..1895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.6223423-CDS-P-wetherbeei_contig12847:90..6311683185963.6223423-CDS-P-wetherbeei_contig12847:90..631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12847 91..631 -
1683185963.6304514-CDS-P-wetherbeei_contig12847:821..8531683185963.6304514-CDS-P-wetherbeei_contig12847:821..853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12847 822..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12847.1.1prot_P-wetherbeei_contig12847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12847 91..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12847.1.1

>prot_P-wetherbeei_contig12847.1.1 ID=prot_P-wetherbeei_contig12847.1.1|Name=mRNA_P-wetherbeei_contig12847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MACCSLNRTWRSKVCVRVVATSGSLMMPMIHSLRGPMMDFIQHTEMFLAA
ASHNGANADVPGAMLPVYREMLRVFTDKWGDDICTHSEGPRRQPKGSTKV
QVLATALDPRMRSFLGVPATPALSERLFSGAGLTVTPRRNWLTDHADETR
VFLFPAFFLYFFLKMLGQQAVDAWRENERRQRGGGGSIRA*
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mRNA from alignment at P-wetherbeei_contig12847:2..1895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12847.1.1 ID=mRNA_P-wetherbeei_contig12847.1.1|Name=mRNA_P-wetherbeei_contig12847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1894bp|location=Sequence derived from alignment at P-wetherbeei_contig12847:2..1895- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGAGGATGACGAGGACGACGGGCAGCAGCAGCACAAGCACCCGGCGG
CCTTGAAGAAGCGAAAAGCCACGCACGCCGACGTTCGAACGATGTACAAG
GTCTGCGCGCCGCTGTGGATCGAGGAGCTCTGCCGCTTCGTGGTCATGCA
GTACCAACCACTTTCTGTCGTCTCTTCCGCTGAGTTCAAAGCCATGGTCG
CTGTGCTCAACAAGCGGGCGACCGTGCCCAGCTCCGACGCGCTCTTCGAC
TACCGACAAGCTGGAGCTGTTCGACGACATTGCGGCTATGACGAAGGGCC
AGCAGGAGGCGGTGATTATGGACGGCAGGACAGTTGGCAGACGTTCAGTA
CTACTCCCTGACACGCCACTTCGTCAACGAGCAGTGAGAGCTCGTATCGC
TGGCGCTGAACTGCGTGAAGCACGTCGGTGGTACGTGCGCGTCGGACCTC
GTATGCATTGTCGAAGAGCACGCGACAAGGGCCGTTGTCACTGTGATCAA
CTTCACCACTGACTGCGACCCCTCCATGGTGGCAGCCGGCCGTGCCACTC
AGTTCTCGCATAGCGGTTGCTTGGCGCGCCGTCTGGAGATGGTCACGGGC
ATCTTCTTTGATGGCCCCCGTGAGGCAGCATGACCGTTTTCTTTTTTTCT
TTTCGAAGTAGTGCTTCTCTTTCATTTGGAAACACTTCAGCTGCTCTTGT
TTAGCAACAGGCTGCCGGCCAACATCTGCAAATTACCACCTTCTCTCCCG
CTTCTTCTCTCAATGATTGCCGTTCACCGCCTGGCAGGCATTGCAAACAC
CATGAAGACCTTCTGGGCACTGGCGTCAACGTTCAACAAATTCACGCAGT
CGACGGCCAGGCTGACCATGGCCTGCGGGGTGGCGGGCATCGCCCACAAG
AAGATCATGCAGGACGTCGAAACTCGCTGGTGGTCAATATTTGTGCTGTG
CAATAGTGCATAACACCTGAAGCCTGCGCTGGTCTTGATCATCATTGACG
GCTTCGTCGTGCCAACGGCAACACAGTGGGAGATCTGCCGTCATGGCATG
CTGCTCCTTGAACCGTACATGGAGGTGCGCTCACCGCTTTTCGCAGCTTG
TTTTCTTAAATAACTAGTCGTTTGATTACTTTCATAGCTTCCTCTCCTCA
GCTCCCTTTCTTGTACATGTTCTGATGCTCCATCCTTTTTTCTCCTTTTT
GTTCTCTCCTTCTCTGAACTTTGCTGCCGCCCTTTCTGCTGCTGCCCTTT
CTGCGGCCTCCCAGGTCGAAAGTATGTGTGAGAGTAGTAGCTACGTCCGG
CAGCCTAATGATGCCGATGATCCACAGCCTGCGTGGGCCCATGATGGACT
TCATTCAGCACACGGAGATGTTCTTGGCGGCGGCAAGCCATAACGGCGCC
AATGCCGACGTCCCCGGCGCCATGCTCCCCGTCTACCGCGAGATGCTGCG
AGTCTTCACCGACAAGTGGGGTGACGACATCTGCACGCACAGCGAGGGGC
CCCGCCGGCAGCCGAAGGGGTCGACGAAGGTTCAGGTGCTGGCGACAGCC
CTTGATCCTCGGATGCGTAGCTTCTTGGGAGTGCCGGCAACGCCAGCCCT
GTCGGAGCGGCTGTTTAGCGGTGCTGGATTGACGGTGACACCACGGCGGA
ACTGGCTGACCGATCATGCTGATGAGACGCGCGTGTTTCTTTTTCCCGCA
TTCTTTCTGTATTTCTTTCTTAAAATGCTTGGCCAGCAAGCAGTGGATGC
CTGGCGTGAAAACGAGCGCCGCCAACGCGGCGGTGGCGGATCTATCAGGG
CCTAAAAGGCATCCCGCAAGTCGGAAGGAACGGGCAAGGGCCCCTGGCAT
CATGGAACCCAGTGTGAGCGGTTAATGGTTCAAAGTTGAACCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12847:2..1895-

>mRNA_P-wetherbeei_contig12847.1.1 ID=mRNA_P-wetherbeei_contig12847.1.1|Name=mRNA_P-wetherbeei_contig12847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig12847:2..1895- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGCTGCTCCTTGAACCGTACATGGAGGTCGAAAGTATGTGTGAG
AGTAGTAGCTACGTCCGGCAGCCTAATGATGCCGATGATCCACAGCCTGC
GTGGGCCCATGATGGACTTCATTCAGCACACGGAGATGTTCTTGGCGGCG
GCAAGCCATAACGGCGCCAATGCCGACGTCCCCGGCGCCATGCTCCCCGT
CTACCGCGAGATGCTGCGAGTCTTCACCGACAAGTGGGGTGACGACATCT
GCACGCACAGCGAGGGGCCCCGCCGGCAGCCGAAGGGGTCGACGAAGGTT
CAGGTGCTGGCGACAGCCCTTGATCCTCGGATGCGTAGCTTCTTGGGAGT
GCCGGCAACGCCAGCCCTGTCGGAGCGGCTGTTTAGCGGTGCTGGATTGA
CGGTGACACCACGGCGGAACTGGCTGACCGATCATGCTGATGAGACGCGC
GTGTTTCTTTTTCCCGCATTCTTTCTGTATTTCTTTCTTAAAATGCTTGG
CCAGCAAGCAGTGGATGCCTGGCGTGAAAACGAGCGCCGCCAACGCGGCG
GTGGCGGATCTATCAGGGCCTAA
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