mRNA_P-wetherbeei_contig12841.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12841.1.1
Unique NamemRNA_P-wetherbeei_contig12841.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12841.1.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 2.150e-126
Identity = 211/409 (51.59%), Postives = 277/409 (67.73%), Query Frame = 2 
Query:  191 VSLQWEGADWWPTLVIKDIVASKWIMDLVNHYMHGPIPMKVELCTVAELRAPLSLVRLSSKGSFRGELRGLRCFGRRTHEDEWDEAKYYTKSIRFRQWAADYVQALIEGTFGRNRKPWGFLVDWLINFLEFDIHNIHIRVDDRGCGHSFGIVEERFSCRPGPEQPESLGATPHHFELEGLVFYCDPHNDPQQSPTHPALQVRRGTFVIEFPNIFRTLILNLEVAPEGRGKRLRCYGDFEDVQAVLQANQMKSFLFSCLGTFCPGKYSAWKRLVREKSARDCRPLDPAQRERYMAAFGPSPNAAAALPPNERLERAQILSALEQHMTYAEMVWLRQRARGWPMVP-------PPVADHPADEELLEGIDSTAESYAAMEAFARRVQWLKFRAWAKSTCLREIYVERCTAR 1396
            V ++WEG   +  LV++  VAS ++++LVN YMHGPIPMKVE C    LRA LS  ++  +GSF+  + GLR FGRRTHEDEWDE+ YY K++RF +WAADYVQ+LIEGT+GR  K WG +VD LIN L F+  ++H+R+DDR  GH FG+  + F C+PG ++PESLGATPH F ++G++FY DPHN+   SP   A+ V  GTF +EFP+IFRTLILN E+ P GRGKRLR  GDF  + A +QANQM++FLFS LGTFCP KYSAWK  +RE++A DCRP+ P+ R  Y+  FG +      L   ++ ERA  L  LE+ M+Y +++ +R+ ARGW +         P     P D EL+EG++     Y  +  FA +VQ LK  AW  STCLREI VE   AR
Sbjct:  183 VDVEWEGGQLF--LVLRRAVASDFLINLVNRYMHGPIPMKVESCRAEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDESFYYEKALRFHRWAADYVQSLIEGTYGRRIKTWGGIVDSLINNLTFETRDVHLRIDDRFNGHCFGMFVDVFDCKPGVQEPESLGATPHEFAVKGVLFYVDPHNEVALSPQCTAMTVDEGTFRVEFPDIFRTLILNREIMPGGRGKRLRVRGDFTGIVANVQANQMRTFLFSLLGTFCPYKYSAWKATIREQAAVDCRPVSPSLRREYIDTFGTA-RQENELKAAQKKERADKLIELERRMSYRDILLVRKEARGWRLEDMGGGGEEPAGTSPPLDPELMEGVEEGDPGYEELAQFAAKVQGLKLSAWEISTCLREIMVETVIAR 588
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BLAST of mRNA_P-wetherbeei_contig12841.1.1 vs. uniprot
Match: A0A836C889_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C889_9STRA)

HSP 1 Score: 365 bits (936), Expect = 9.720e-109
Identity = 226/513 (44.05%), Postives = 281/513 (54.78%), Query Frame = 2 
Query:   71 VYVGGLWL--IGRVTGCNVDIAN--GVFRFVLRWARVVDMDRA------LVSLQWEG-ADWWPTLVIKDIVASKWIMDLVNHYMHGPIPMKVELCTVAELRAPLSLVRLSSKGSFRGELRGLRCFGRRTHEDEWDEAKYYTKSIRFRQWAADYVQA-------------LIEGTFGRNRKPWGFLVDWLINFLEFDIHNIHIRVDDRGCGHSFGIVEERFSCRPG------------------PEQPESLGATPHHFELEGLVFYCDPHNDPQQSPTHPALQVRRGTFVIEFPNIFRTLILNLEVAPEGRGKRLRCYGDFEDVQAVLQANQMKSFLFSCLGTFCPGKYSAWKRLVREKSARDCRPLDPAQRERYM----AAFGP-SPNAAAA-----LP--PNERLERAQILSALEQHMTYAEMVWLRQRARGWPMVPPPVADHPAD--EELLEGIDSTAESYAAMEAFARRVQWLKFRAWAKSTCLREIYVERCTARGFAVRLLDRAVPGRD 1441
            V V   WL  +  ++ C+  +A   G+ R  L  A     DRA       VSL W+  + WWP L +    AS+  ++L+NHYMHGPIP KVE  +   +R PL  +    +GS   +  GLR  GRRTHEDEWDEA+Y  K++ +R+W ADYVQ              L+EGTFGR  + W   VD LIN  +FD+ +IH+R++DR  GHSFGI+  R                        P    SLGA   H E   LV Y DPH D  +SP  P L++   T +++FP+IF TLI N  V P G GKRLR   D    +  LQ NQ ++ LFS LG FCPGKY+AWKR +RE  AR CRPL P QR  Y+    AA G  +P  AAA     LP     R  RA  L+ LE+HM+YAEMV LR+RAR WP +PP          EELL G        AA++ FARRVQ LK  AW +STCLREI+VERC  RG A RL  RA    D
Sbjct:   30 VGVSSWWLAILVLLSLCSFALARLTGIHRICLTLAVRKAFDRAGMATASNVSLLWDDDSSWWPVLAMDKCEASERAINLINHYMHGPIPTKVEAISFDTVRIPLLPLAAWRRGSIAAQATGLRSTGRRTHEDEWDEARYLAKAVAYRRWTADYVQXXXXXXXXXXXXXXLVEGTFGRKLRWWMSTVDSLINNFQFDVSDIHLRIEDRPNGHSFGIMVARXXXXXXXXXXXXXXXXXXXXXXXEPGDTASLGAVTRHTEATRLVCYVDPHLDASRSPECPILEIDSATLLVDFPHIFTTLIRNRAVMPRGCGKRLRLRCDATGARVTLQPNQSRTLLFSALGAFCPGKYAAWKRAIREADARACRPLTPRQRAAYLDAALAAGGIYAPRGAAAPLRDWLPGAARRRAARAAALARLERHMSYAEMVALRRRARRWPPLPPXXXXXXXXXXEELLSGAGGDGRGAAAVD-FARRVQALKLAAWERSTCLREIWVERCCVRGAAARLRRRAAAADD 541
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BLAST of mRNA_P-wetherbeei_contig12841.1.1 vs. uniprot
Match: A0A6H5KZA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA2_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 2.420e-73
Identity = 161/444 (36.26%), Postives = 218/444 (49.10%), Query Frame = 2 
Query:  191 VSLQWEGADWWPTLVIKDIVASKWIMDLVNHYMHGPIPMKVELCTVAELRAPLSLVRLSSKGSFRGELRGLRCFGRRTHEDEWDEAK----------------YYTKSIRFRQWAADYVQALIEGTFGRNRKPWGFLVDWLINFLEFDIHNIHIRVDDRGCGHSFGIVEERFSCRPGPEQPESLGATPHHFELEGLVFYCDPHNDPQQSPTHPALQVRRGTFVIEFPNIFRTLILNLEVAPEGRGKRLRCYGDFEDVQAVLQANQMKSFLFSCLGTFCPGKYSAWKRLVREKSARDCRPLDPAQRERYMAAFGPSPNAAAALPPNERLERAQILSALEQHMTYAEMVWLRQRARGWPMVP-------PPVADHPADEELLEGIDS-------------------TAESYAAMEAFARRVQWLKFRAWAKSTCLREIYVERCTAR 1396
            V ++WEG   +  LV++  VAS +++DL+N YMHGPIPMKVE C V  LRA LS  ++  +GSF+  + GLR FGRRTHEDEWDE +                YY K++RF +WAAD+VQ+LIEGT+GR  K WG +VD LIN L F+  ++H+R+DDR  GH FG+  + F C+PG ++PESLGATPH F +EG++FY DPHN+   SP   A+                                                                             +A DCRP+ P+ R  Y+  FG +      L   ++ ERA  L  LE+ M+Y +++ +R+ ARGW +         P     P D EL+EG++                        Y  +  FA +VQ LK  AW  STCLREI VE   AR
Sbjct:  176 VDVEWEGGQLF--LVLRRAVASDFLIDLINRYMHGPIPMKVESCRVEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDEVQRPAYRDALPFASLPSFYYEKALRFHRWAADHVQSLIEGTYGRRMKRWGGIVDSLINNLTFETRDVHLRIDDRLNGHCFGMFVDVFDCKPGVQEPESLGATPHEFAVEGVLFYVDPHNEVALSPQCTAMT----------------------------------------------------------------------------AAADCRPVSPSLRREYIDTFGTA-RQENELKAAQKKERADKLIELERRMSYRDILLVRKEARGWRLEDMGGGGEEPAGTSPPLDPELMEGVEEGDPGVGGMRVPTENIIVFQATRVYEELAQFAAKVQGLKLSAWEISTCLREIMVETVIAR 540
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12841.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2C6_ECTSI2.150e-12651.59C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836C889_9STRA9.720e-10944.05C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6H5KZA2_9PHAE2.420e-7336.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12841contigP-wetherbeei_contig12841:4..1444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1443
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1395
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.5501597-CDS-P-wetherbeei_contig12841:3..13981683185963.5501597-CDS-P-wetherbeei_contig12841:3..1398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12841 4..1398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.5578592-UTR-P-wetherbeei_contig12841:1398..14441683185963.5578592-UTR-P-wetherbeei_contig12841:1398..1444Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12841 1399..1444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12841.1.1prot_P-wetherbeei_contig12841.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12841 4..1398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12841.1.1

>prot_P-wetherbeei_contig12841.1.1 ID=prot_P-wetherbeei_contig12841.1.1|Name=mRNA_P-wetherbeei_contig12841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MFALFWPVVYVGGLWLIGRVTGCNVDIANGVFRFVLRWARVVDMDRALVS
LQWEGADWWPTLVIKDIVASKWIMDLVNHYMHGPIPMKVELCTVAELRAP
LSLVRLSSKGSFRGELRGLRCFGRRTHEDEWDEAKYYTKSIRFRQWAADY
VQALIEGTFGRNRKPWGFLVDWLINFLEFDIHNIHIRVDDRGCGHSFGIV
EERFSCRPGPEQPESLGATPHHFELEGLVFYCDPHNDPQQSPTHPALQVR
RGTFVIEFPNIFRTLILNLEVAPEGRGKRLRCYGDFEDVQAVLQANQMKS
FLFSCLGTFCPGKYSAWKRLVREKSARDCRPLDPAQRERYMAAFGPSPNA
AAALPPNERLERAQILSALEQHMTYAEMVWLRQRARGWPMVPPPVADHPA
DEELLEGIDSTAESYAAMEAFARRVQWLKFRAWAKSTCLREIYVERCTAR
GFAVRLLDRAVPGRD
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mRNA from alignment at P-wetherbeei_contig12841:4..1444-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12841.1.1 ID=mRNA_P-wetherbeei_contig12841.1.1|Name=mRNA_P-wetherbeei_contig12841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1441bp|location=Sequence derived from alignment at P-wetherbeei_contig12841:4..1444- (Phaeothamnion wetherbeei SAG_119_79)
GCATTGCCCGATTGGAACGCGTTATCGGGGACCCGTTAACTAAGCAATGT
TTGCACTATTCTGGCCAGTAGTATACGTCGGAGGCCTGTGGCTTATCGGG
CGTGTTACAGGATGCAATGTCGATATTGCAAACGGAGTTTTCCGCTTCGT
CCTTCGATGGGCGCGCGTCGTTGACATGGACCGCGCTCTCGTTTCTTTGC
AATGGGAGGGGGCGGACTGGTGGCCAACGCTGGTGATCAAAGACATCGTG
GCAAGCAAGTGGATCATGGACTTGGTAAACCACTATATGCACGGCCCAAT
CCCGATGAAGGTGGAGCTGTGCACGGTGGCGGAGCTCCGCGCGCCCCTCT
CTCTGGTGCGCCTTTCGTCGAAAGGTTCTTTTCGCGGGGAGCTGCGAGGC
CTGCGGTGCTTCGGGAGGCGGACGCATGAGGACGAGTGGGACGAGGCAAA
GTACTACACAAAGTCGATCCGCTTCCGTCAGTGGGCTGCCGACTACGTGC
AGGCGCTGATCGAAGGAACCTTCGGCCGGAATCGCAAGCCGTGGGGCTTC
CTAGTGGACTGGCTCATCAACTTCCTGGAATTCGACATCCACAACATCCA
CATCCGCGTAGACGACCGCGGCTGCGGCCACAGCTTCGGCATCGTCGAGG
AGCGCTTCTCGTGCCGGCCGGGACCGGAGCAGCCCGAGTCGCTCGGGGCG
ACGCCTCACCACTTCGAGCTGGAAGGCCTCGTCTTCTACTGCGATCCGCA
CAACGACCCGCAGCAGAGCCCGACGCACCCGGCGCTGCAAGTGCGCCGCG
GCACGTTCGTCATCGAGTTCCCCAACATCTTTCGCACCCTGATCCTCAAC
CTGGAGGTCGCACCAGAGGGCCGGGGCAAACGGCTGCGGTGCTACGGCGA
CTTTGAGGACGTCCAGGCCGTCCTGCAGGCCAACCAGATGAAGTCTTTCC
TCTTCAGCTGCCTCGGCACCTTCTGCCCTGGGAAGTACAGCGCCTGGAAG
CGCCTCGTCCGCGAGAAGTCAGCCCGGGACTGCCGACCACTCGACCCGGC
TCAGCGGGAGCGGTACATGGCCGCTTTCGGCCCGTCGCCCAACGCCGCGG
CGGCGTTGCCGCCGAACGAGCGCCTCGAGCGCGCGCAGATCCTCTCGGCG
CTCGAACAGCACATGACCTACGCGGAAATGGTCTGGCTGCGGCAGCGCGC
CCGTGGCTGGCCGATGGTGCCGCCGCCAGTCGCCGACCACCCAGCGGACG
AGGAGCTGCTGGAGGGAATCGATTCAACAGCAGAGAGTTATGCGGCAATG
GAGGCCTTCGCCCGGCGCGTGCAGTGGCTCAAGTTCCGGGCCTGGGCCAA
GAGCACGTGTCTCCGCGAGATCTACGTGGAGCGCTGCACTGCCCGCGGCT
TCGCCGTGCGGCTCCTGGACCGCGCCGTTCCCGGGAGAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12841:4..1444-

>mRNA_P-wetherbeei_contig12841.1.1 ID=mRNA_P-wetherbeei_contig12841.1.1|Name=mRNA_P-wetherbeei_contig12841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig12841:4..1444- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGCACTATTCTGGCCAGTAGTATACGTCGGAGGCCTGTGGCTTAT
CGGGCGTGTTACAGGATGCAATGTCGATATTGCAAACGGAGTTTTCCGCT
TCGTCCTTCGATGGGCGCGCGTCGTTGACATGGACCGCGCTCTCGTTTCT
TTGCAATGGGAGGGGGCGGACTGGTGGCCAACGCTGGTGATCAAAGACAT
CGTGGCAAGCAAGTGGATCATGGACTTGGTAAACCACTATATGCACGGCC
CAATCCCGATGAAGGTGGAGCTGTGCACGGTGGCGGAGCTCCGCGCGCCC
CTCTCTCTGGTGCGCCTTTCGTCGAAAGGTTCTTTTCGCGGGGAGCTGCG
AGGCCTGCGGTGCTTCGGGAGGCGGACGCATGAGGACGAGTGGGACGAGG
CAAAGTACTACACAAAGTCGATCCGCTTCCGTCAGTGGGCTGCCGACTAC
GTGCAGGCGCTGATCGAAGGAACCTTCGGCCGGAATCGCAAGCCGTGGGG
CTTCCTAGTGGACTGGCTCATCAACTTCCTGGAATTCGACATCCACAACA
TCCACATCCGCGTAGACGACCGCGGCTGCGGCCACAGCTTCGGCATCGTC
GAGGAGCGCTTCTCGTGCCGGCCGGGACCGGAGCAGCCCGAGTCGCTCGG
GGCGACGCCTCACCACTTCGAGCTGGAAGGCCTCGTCTTCTACTGCGATC
CGCACAACGACCCGCAGCAGAGCCCGACGCACCCGGCGCTGCAAGTGCGC
CGCGGCACGTTCGTCATCGAGTTCCCCAACATCTTTCGCACCCTGATCCT
CAACCTGGAGGTCGCACCAGAGGGCCGGGGCAAACGGCTGCGGTGCTACG
GCGACTTTGAGGACGTCCAGGCCGTCCTGCAGGCCAACCAGATGAAGTCT
TTCCTCTTCAGCTGCCTCGGCACCTTCTGCCCTGGGAAGTACAGCGCCTG
GAAGCGCCTCGTCCGCGAGAAGTCAGCCCGGGACTGCCGACCACTCGACC
CGGCTCAGCGGGAGCGGTACATGGCCGCTTTCGGCCCGTCGCCCAACGCC
GCGGCGGCGTTGCCGCCGAACGAGCGCCTCGAGCGCGCGCAGATCCTCTC
GGCGCTCGAACAGCACATGACCTACGCGGAAATGGTCTGGCTGCGGCAGC
GCGCCCGTGGCTGGCCGATGGTGCCGCCGCCAGTCGCCGACCACCCAGCG
GACGAGGAGCTGCTGGAGGGAATCGATTCAACAGCAGAGAGTTATGCGGC
AATGGAGGCCTTCGCCCGGCGCGTGCAGTGGCTCAAGTTCCGGGCCTGGG
CCAAGAGCACGTGTCTCCGCGAGATCTACGTGGAGCGCTGCACTGCCCGC
GGCTTCGCCGTGCGGCTCCTGGACCGCGCCGTTCCCGGGAGAGAC
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