mRNA_P-wetherbeei_contig1284.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1284.1.1
Unique NamemRNA_P-wetherbeei_contig1284.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S3Y9Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z4_HETAK)

HSP 1 Score: 280 bits (715), Expect = 5.690e-87
Identity = 136/187 (72.73%), Postives = 158/187 (84.49%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +AL++FH MKI DINKII ELWQ  Y G DI+ IEIVSGEEG S +A RSYNYRV M KG   LDMKGRCSAGQRVL+S+VIRLALAETFC+NCGILALDEPTTNLD +NK GLA+ALAKIIAARS+Q NFQL+ ITHD++FV  MRN L ++AG SMPEY+Y +SREE+ A RF+SRIDR+DW E+
Sbjct:   15 KALMQFHRMKIEDINKIIRELWQITYQGNDIESIEIVSGEEGTSNRAGRSYNYRVCMTKGDAHLDMKGRCSAGQRVLSSIVIRLALAETFCLNCGILALDEPTTNLDSDNKRGLANALAKIIAARSKQTNFQLLAITHDEEFVAMMRNELASHAGFSMPEYFYRVSREELRAGRFYSRIDRNDWAEL 201
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: D7FQL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.710e-84
Identity = 137/187 (73.26%), Postives = 160/187 (85.56%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLRFH+MKIADINKII ELW   YSG+DIDMIEIVSG++ +S KA+RSYNYRVVMRK    LDMKGRCSAGQRVLAS+VIRLALAETFC++CGILALDEPTTNLDHNNK GLA ALAKII++RS+Q NFQL+ ITHD++FV TMR  L    G SMPE+Y+ ISREEM   +F+SRIDR DW+++
Sbjct:  262 KALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEMSRGKFYSRIDRLDWEDM 448
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A835YS51_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS51_9STRA)

HSP 1 Score: 263 bits (673), Expect = 6.620e-80
Identity = 131/183 (71.58%), Postives = 155/183 (84.70%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEM--GANRFFSRIDR 1088
            +AL+R+H MKIA+INKII ELWQ  Y G DIDMIEIVSGE+G S +A RSYNYRV MRKGST+LDMKGRCSAGQRVLAS+VIRLALAETFCINCGILALDEPTTNLD  NK+GLA ALA+IIA RS+Q NFQL++ITHD++FV TMR  L + AG +MPEYY+ +SRE+    + +F+SR+ R
Sbjct:   74 KALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTR 256
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S2B1T5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1T5_9STRA)

HSP 1 Score: 251 bits (642), Expect = 5.140e-74
Identity = 124/190 (65.26%), Postives = 148/190 (77.89%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMR---NHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLR+HS KI +IN+II ELW T Y GQDID IEIVSGEEG ST+A RSYNYRV MRKG T LDMKGRCSAGQRVLA +VIRLALAETFC+ CGIL LDEPTTNLD  NK GLA ALA II+ R++Q+NFQ+++ITHD DFV  MR   N L      ++PEYY+ I R ++   ++ S+I+R DWDE+
Sbjct:  167 KALLRYHSHKIQEINRIIRELWSTTYMGQDIDSIEIVSGEEGASTRASRSYNYRVAMRKGDTTLDMKGRCSAGQRVLACIVIRLALAETFCLTCGILTLDEPTTNLDEYNKQGLASALADIISIRAKQRNFQVIVITHDPDFVNYMRSAFNQLGTQRAFNLPEYYWRIFRSQVATGQYVSQIERIDWDEL 356
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S2EEH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEH2_TRICV)

HSP 1 Score: 245 bits (626), Expect = 1.710e-73
Identity = 120/187 (64.17%), Postives = 147/187 (78.61%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLR+H MKIADINKII ELW   Y G+DI  IE+ S ++  S +A RSYNYRVVM KGST LDM+GRCSAGQRVLAS+VI+LALAETFC+NCG++ LDEPTTNLD+ NK GLA ALA+IIA R+ Q NFQLV+ITHD++FV  M+N L A+ G  MPE Y+ +SREE    + +S+I   DWDE+
Sbjct:   38 KALLRYHGMKIADINKIIRELWTLTYKGEDITNIELASNQDAGS-RAARSYNYRVVMTKGSTPLDMRGRCSAGQRVLASIVIKLALAETFCLNCGVMCLDEPTTNLDYANKRGLAIALAQIIATRAAQANFQLVVITHDEEFVAMMKNELTAHTGFDMPERYFQVSREEGSDGKHYSKIHAIDWDEL 223
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S2RPE9_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RPE9_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.480e-72
Identity = 120/187 (64.17%), Postives = 146/187 (78.07%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLR+H +KI +INKII E+W   Y G+DI  IEIVSGEE  + K  +SYNYRVVM KG+T LDM+GRCSAGQRVLAS+VIRLALAETFC+NCG + LDEPTTNLD  NK GLA ALA+IIA RS QQNFQLVIITHD+DFV+ M+N L  + G  MPE Y+ +SR++     ++S+I   DWDE+
Sbjct:   73 KALLRYHGIKIEEINKIIREVWTLTYKGEDISNIEIVSGEEN-ARKTSKSYNYRVVMSKGNTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGFMTLDEPTTNLDFANKRGLAIALAQIIATRSAQQNFQLVIITHDEDFVSMMKNELSTHTGFDMPERYFQVSRQQATDGHYYSKIHAIDWDEL 258
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7R9WT19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT19_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.320e-71
Identity = 117/186 (62.90%), Postives = 148/186 (79.57%), Query Frame = 3 
Query:  549 ALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            ALL+FHS+KIA+IN+II +LW+  Y G+DI  IE+VSG++    +A RSYNYRVVM KGST +DM+GRCSAGQRVLAS+VIRLALAETFC+NCG +ALDEPT NLD NNK GLA ALA+I A RS Q NFQL++ITHD+DFV  M+  L + +G +MPE Y+ + REE    +++S+ID  DWDE+
Sbjct:   99 ALLQFHSIKIAEINQIIRDLWRLTYKGEDITTIELVSGQDS-GARASRSYNYRVVMTKGSTRMDMRGRCSAGQRVLASIVIRLALAETFCVNCGCIALDEPTVNLDFNNKRGLAIALAQITADRSAQSNFQLIMITHDEDFVAMMKTELASQSGFTMPEKYFQVRREEGADGKYYSKIDAIDWDEL 283
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7R9W3X1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3X1_9STRA)

HSP 1 Score: 246 bits (629), Expect = 4.040e-70
Identity = 121/187 (64.71%), Postives = 150/187 (80.21%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLR+H MKIADINKII ELW   Y G+DI  I++ SG+E + ++A RSYNYRVVM KG   LDM+GRCSAGQRVLAS+VIRLALAETFC+NCG++ LDEPTTNLD+ NK GLA ALA+IIA R+ Q NFQLV+ITHD++FVT M+N L A++G SMPE Y+ +SREE    + +S+I   DWDE+
Sbjct:  340 KALLRYHGMKIADINKIIRELWTLTYKGEDIANIKLESGQE-KGSRAARSYNYRVVMTKGGAELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMCLDEPTTNLDYANKRGLAVALAQIIANRASQTNFQLVVITHDEEFVTMMKNELSAHSGFSMPERYFQVSREEGSDGKHYSKIHAIDWDEL 525
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S2PNE7_9STRA (Hypothetical protein n=3 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNE7_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.680e-69
Identity = 123/187 (65.78%), Postives = 152/187 (81.28%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLRFH +KI +INKII ELW   Y GQDI  I+IVSG+E  S +A RSYNYR+VM KG++ +DM+GRCSAGQRVLAS+VIRLALAETFC+NCG++ALDEPTTNLDH NK GLA ALA+IIA+R+ Q NFQLV+ITHD+DFV+ M+N L +  G +MPE YY +SREE    +F+S+I   DWDE+
Sbjct: 1142 KALLRFHGIKIGEINKIIRELWTLTYKGQDITSIQIVSGQES-SARANRSYNYRIVMEKGNSQMDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMALDEPTTNLDHENKKGLAIALAQIIASRAAQSNFQLVVITHDEDFVSMMKNELSSQTGFTMPERYYQVSREEGHDGKFYSKISAVDWDEL 1327
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BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Match: A0A7S2P0S2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0S2_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.920e-68
Identity = 125/187 (66.84%), Postives = 151/187 (80.75%), Query Frame = 3 
Query:  546 QALLRFHSMKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMRKGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDHNNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSMPEYYYTISREEMGANRFFSRIDRHDWDEI 1106
            +ALLR+H MKI DINKII ELW   Y G+DI  IE+VS  +G S KA +SYNYRVVM KG+T LDM+GRCSAGQRVLA++VIRLALAETFC+NCG++ALDEPTTNLD+ NKNGLA ALA+IIA R+ Q NFQLV+ITHD+DFV  ++N L A AG SMPE Y+ +SREE    +++S+I   DWDEI
Sbjct:  691 KALLRYHGMKITDINKIIRELWLICYKGEDITNIELVS--DGGS-KASKSYNYRVVMTKGNTPLDMRGRCSAGQRVLAAIVIRLALAETFCLNCGVMALDEPTTNLDYENKNGLAIALAQIIANRASQSNFQLVVITHDEDFVAMLKNELAATAGTSMPERYFHVSREEAEDGKYYSKISALDWDEI 874
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y9Z4_HETAK5.690e-8772.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FQL8_ECTSI2.710e-8473.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YS51_9STRA6.620e-8071.58P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2B1T5_9STRA5.140e-7465.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2EEH2_TRICV1.710e-7364.17Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2RPE9_9STRA1.480e-7264.17Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A7R9WT19_9STRA1.320e-7162.90Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9W3X1_9STRA4.040e-7064.71Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2PNE7_9STRA3.680e-6965.78Hypothetical protein n=3 Tax=Skeletonema marinoi T... [more]
A0A7S2P0S2_9STRA3.920e-6866.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1284contigP-wetherbeei_contig1284:290..2629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQL8
Preferred nameRAD50
PFAMsAAA_23,Rad50_zn_hook,SbcCD_C
Model size2014
Max annot lvl2759|Eukaryota
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Exons2
Evalue1.51e-86
EggNOG OGsCOG0419@1|root,KOG0962@2759|Eukaryota
DescriptionG-quadruplex DNA binding
Cds size546
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.442104-UTR-P-wetherbeei_contig1284:289..8581683185963.442104-UTR-P-wetherbeei_contig1284:289..858Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1284 290..858 +
1683185963.466025-UTR-P-wetherbeei_contig1284:1730..26291683185963.466025-UTR-P-wetherbeei_contig1284:1730..2629Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1284 1731..2629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.4512928-CDS-P-wetherbeei_contig1284:858..10651683185963.4512928-CDS-P-wetherbeei_contig1284:858..1065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1284 859..1065 +
1683185963.4587295-CDS-P-wetherbeei_contig1284:1391..17301683185963.4587295-CDS-P-wetherbeei_contig1284:1391..1730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1284 1392..1730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1284.1.1prot_P-wetherbeei_contig1284.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1284 859..1730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1284.1.1

>prot_P-wetherbeei_contig1284.1.1 ID=prot_P-wetherbeei_contig1284.1.1|Name=mRNA_P-wetherbeei_contig1284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MKIADINKIIHELWQTVYSGQDIDMIEIVSGEEGESTKARRSYNYRVVMR
KGSTVLDMKGRCSAGQRVLASLVIRLALAETFCINCGILALDEPTTNLDH
NNKNGLADALAKIIAARSRQQNFQLVIITHDDDFVTTMRNHLLAYAGVSM
PEYYYTISREEMGANRFFSRIDRHDWDEIAA*
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mRNA from alignment at P-wetherbeei_contig1284:290..2629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1284.1.1 ID=mRNA_P-wetherbeei_contig1284.1.1|Name=mRNA_P-wetherbeei_contig1284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2340bp|location=Sequence derived from alignment at P-wetherbeei_contig1284:290..2629+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTCCGTTTTCAGCTGGAGTGGTGCAGTCTTTGCGGGCCGAGACGCGTG
CACTGGCGGTAGTGGGGCGATGCCTGCGAGCTTTCAGTGCAGTGTATCCG
TGTTATGCGGATACTCTTCCGTCGAAGGGACCGCAAAGATGCATGGAGGC
CTGGGACAGTGAGAGTTTTAAGAGTTCTCGCGATGGATGCGTAAAGGGCA
TTCAGCATATGTTTTATAGTGGTTTGCTGTTTGTGTATTGTGCTTTGTCA
ACTGTGGCCTTTATGTCAGCTCCCGGCTTTTCGTCAGCTCCCAGTTTCGC
TACGGATACCTGCTTGCAAAGGAGCTCCATGCATCGTATTTCACCGCTGG
CGCACAGCATGCATGTATATCATCAATTATTGCCAACCTGCGAAGTTTGG
CTGGCATATACTGCCCTAAGCCAGCCGGGAACGACCCTGCTCGTGTTTTT
GACATGCCGCAGCCTTATGTCTCGGCTGTTGCCGATAAGCCCGTCTCCAT
TTTTCCTCTCTCTGGAACAATCCCTGCCCCTACCAATGAAAAACCCAGGC
GCTGCTCCGCTTCCACTCGATGAAGATCGCGGACATCAACAAGATCATCC
ACGAGCTGTGGCAGACGGTCTACTCGGGGCAGGACATTGACATGATCGAA
ATTGTATCGGGCGAGGAGGGCGAATCCACCAAGGCGCGCCGCTCCTACAA
CTACCGTGTCGTCATGCGCAAGGGCAGCACCGTCCTAGACATGAAGGGCC
GCTGCAGCGCCGGGCAGCGCGTCCTGGTGCGTCTTTACTGCTGGCTTTTT
GCGGGTTTGTTTCTTGACGCTTTTTCCGTCTCTGCTTGTTCTGCTAGAGT
GCTACCCGCCCGCGATTATCGAAGCTGCTCGTTGCGCCATGTAACTGGTT
GCTTCGCCGTTCTTTTTAGCCCCTGCTGGACTTATGATGGGAAAGCACAG
TTCGGATATAACCAGCGTTGCATGGTCATCCGCCACTTCTGCTAGACGCT
CCTTTATCTTTTCTTTCTCTCTCTCTCTGCGCGCCCTTCTTGCCGTCGCT
GCTGCTGCCCCTTGCCGCTGCTGCATCTTACCGATGCTGCCATTTCCATC
AGGCGTCGCTGGTGATCCGGCTGGCGCTCGCGGAGACGTTCTGCATCAAC
TGCGGCATCCTGGCGCTCGACGAGCCCACCACCAATCTCGACCACAACAA
CAAGAACGGCCTCGCAGATGCCCTCGCCAAGATCATCGCGGCGCGCTCCA
GGCAGCAGAACTTCCAGCTGGTCATCATCACGCACGATGACGACTTCGTT
ACGACCATGCGCAACCACCTGCTGGCCTACGCCGGCGTCTCGATGCCGGA
GTACTATTACACAATCTCGCGCGAGGAAATGGGCGCCAACCGCTTCTTCT
CGCGAATCGACCGCCACGATTGGGACGAGATCGCCGCCTGATGCGCTTGT
AGGAGCGCTGGAGGCGGCGCGGGATGTAGCGGGGCGGCTGCCGGACGGCG
CGCTGTCGGCACTTCGCGGCTGGCGCGCCGCAGCGCCGCCGTTGGCGGCG
GCGGCGCTGCTGGCGGCGCTGCTAGTGGTGACAGTGGCGACGACGTGCCG
GCGCTGCTGGCGATGGCGTGGTGGCGCTGTCTGGCGCGGCCTGACGTTCT
GCTGACCGCAGCCAGGGGGTTGCTGCGGAAAGACGGCGCTGCTGATGCGG
CGTCCCACGGCATCGGCGCTGTATCCGGCGCTGGCGGCGGTGCTGCGGAG
CGGGACAGTGCGTGGCATCGGAAGAGATGGCCTAGAACTGTCCGTGGGAA
GGCGGGCGGGGCGCTGTCCGGCGGAGGGGAAATGGCTGATCGAGGGTCAA
GCGAGCTCGCTGAATGGTGCCGGGCGTTGGTGGTCCTTTGCGGCATTCAT
TTGAGGCCGTGCTGGTTCAGCTTGGAACGGCATGGTGCCGTTTCGGCTGA
GCTGCCTAAGGTGCGGCTTTCTCAAAGAAAAATGTGGGTGGTAAGTTTGA
TATGGCATTTGGAATAGGCACGGCGGCAATAGACCCCGGCAAGGGGGCGG
TGTACATCTACTGCACCAGTGCCAAGAAAGCGCAGGGCGTTGGCTGTGCG
GAAAACAAGCATAGCTTTTCGTCTCTGTAAATGTCTTATATGTGCCACTG
TGCTCAGCTTTAATATCGTAACGCGCAGAACGCTGCAACGCCCGCCTTGA
TCCAGTACTCCTGGTCGGCGAATTGGACTTGCTTGTTGGTCTCAGACACT
AACGAGCTTCGCCATACTGTTGATTTTGTGCTCGGGATCTCCATCCTGTG
GTGGCACAAAATGTAAAACCGACAAAAGATTCGGCTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1284:290..2629+

>mRNA_P-wetherbeei_contig1284.1.1 ID=mRNA_P-wetherbeei_contig1284.1.1|Name=mRNA_P-wetherbeei_contig1284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig1284:290..2629+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGATCGCGGACATCAACAAGATCATCCACGAGCTGTGGCAGACGGT
CTACTCGGGGCAGGACATTGACATGATCGAAATTGTATCGGGCGAGGAGG
GCGAATCCACCAAGGCGCGCCGCTCCTACAACTACCGTGTCGTCATGCGC
AAGGGCAGCACCGTCCTAGACATGAAGGGCCGCTGCAGCGCCGGGCAGCG
CGTCCTGGCGTCGCTGGTGATCCGGCTGGCGCTCGCGGAGACGTTCTGCA
TCAACTGCGGCATCCTGGCGCTCGACGAGCCCACCACCAATCTCGACCAC
AACAACAAGAACGGCCTCGCAGATGCCCTCGCCAAGATCATCGCGGCGCG
CTCCAGGCAGCAGAACTTCCAGCTGGTCATCATCACGCACGATGACGACT
TCGTTACGACCATGCGCAACCACCTGCTGGCCTACGCCGGCGTCTCGATG
CCGGAGTACTATTACACAATCTCGCGCGAGGAAATGGGCGCCAACCGCTT
CTTCTCGCGAATCGACCGCCACGATTGGGACGAGATCGCCGCCTGA
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