mRNA_P-wetherbeei_contig12833.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12833.1.1
Unique NamemRNA_P-wetherbeei_contig12833.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A7Z9PRX3_9BACT (CHAT domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRX3_9BACT)

HSP 1 Score: 113 bits (282), Expect = 2.060e-25
Identity = 74/206 (35.92%), Postives = 116/206 (56.31%), Query Frame = 1
Query:    1 LLAQTKSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRK-MCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQP-VQGKPHFLIEDVAVVTLLHATDLSRLGKE-SLHSSDRLLALGNPDGT 609
            LLA TK+EF++ +  L     ++  L +++PV F ++QK +P +TL+ QY+PT D LY F++     K R +   +++L      FR+ +C+   + E +L                   L+  LI P+ ++LQG +VLAV+PT  LLY+PF ALA+    G P +LIE    V+L+ ++DL  L  E S  S  +L+A GNPDG+
Sbjct:  718 LLASTKAEFYNSLGVLYRINPSFERL-AIRPVNFGRVQKYVPKNTLVAQYFPTEDVLYIFLLDQTSLKTRQVAVKESELARLGGKFRRSLCRVGDIEEESLA------------------LYRYLIAPIEKELQGKEVLAVVPTGSLLYVPFQALARSGADGTPEYLIERFQTVSLVKSSDLDILDNEVSRGSQGKLVAFGNPDGS 904          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A523R3L6_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A523R3L6_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 1.410e-18
Identity = 56/202 (27.72%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    4 LAQTKSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESLHSSDRLLALGNPDGT 609
            LA T+ EF   +  L+ Q       L+++P     +Q  +P + LL++Y+ +ADKLY F I  + F V++++  + ++ G +  ++ + ++             SS   ++L     +L+  L++P+ E++   + + ++P   L YLPF AL +   G+  +LIE   +     AT  + L K+   S D+L+A+GNPDG+
Sbjct: 1299 LANTEGEFNQWMMKLKFQNPGMFNALTIKPTTLGDIQGDIPGNILLLEYFISADKLYIFCIGKEHFVVKSVEVGEVEITGLVEYYQGVVQN------------QSSSVDEELNEPALKLYDYLLRPVEEEMDAFENIVIVPFGPLYYLPFHALIREKDGRREYLIEWKRLSYTTSAT-FADLLKDEQKSKDKLIAMGNPDGS 1487          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: UPI0010F9DB63 (CHAT domain-containing protein n=1 Tax=Mesorhizobium comanense TaxID=2502215 RepID=UPI0010F9DB63)

HSP 1 Score: 92.8 bits (229), Expect = 2.650e-18
Identity = 68/218 (31.19%), Postives = 114/218 (52.29%), Query Frame = 1
Query:    1 LLAQTKSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFA-----------LSEAALKPFDWSSGA---GQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESLHS-SDRLLALGNPDGT 609
            L+ Q + +   V+  L    +    +L ++P++ A LQK++PAD+++VQY PTA KL+  V+  D   VR +D     L+   R  R   ++ A           L +A    FD ++ A    +QL   LN+L+  L+ P+ + L G+K +  +P+  L  +PF +L      K HFL+ED A+  L+ +  L  +    + S SD++L LG+PDG+
Sbjct: 1815 LVEQRQKQMARVLLQLERDSEGMAQMLQMKPLDLAALQKEMPADSVMVQYIPTAKKLFIQVVGRDERDVREVDIDAGGLFAEARLTRGRLQAVAAALRQGRGGVSLVKAEPGLFDGATTAKDQDRQLYDGLNQLYKELVLPVEDLLGGYKHVYFVPSGPLAEVPFASLVSQRGDKNHFLVEDHAI-GLMPSLYLVHIYLTHIASASDQMLILGDPDGS 2031          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A7Z9PQZ3_9BACT (CHAT domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PQZ3_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.290e-10
Identity = 52/200 (26.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:    1 LLAQTKSEFFSVVRDLRGQGK-NYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESLHSSDRLLALGN 597
            LLA  K+ F +  R LR + +  Y   L   P+    +QK LP D  ++QY+ T ++ Y FV+SHD  K+R +   + +L   + D+    +                   Q   A    L+  L +P A+D+   K L ++P+  L  LPF +L     G P  +I   ++V L    D  ++ + +  S +++    N
Sbjct:  712 LLADGKAAFLTAGRKLREKFEVEYKLSLRYDPLHLPSIQKLLPQDVAVLQYFATDNEFYIFVVSHDDLKLRQVTIKREELDNLVLDYLTALRRL-----------------QDTTALSKRLYGVLFEPAAKDIASSKTLILLPSGELNSLPFASLTDAT-GAP--IINSKSLVALGQTDDFRKIAETAPLSINQVAVFAN 891          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A538QX78_9BACT (CHAT domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A538QX78_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 2.790e-8
Identity = 60/182 (32.97%), Postives = 86/182 (47.25%), Query Frame = 1
Query:   58 GKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESLHSSDRLLALGNPD 603
            G     L++V  +  A++Q++L AD +L++YY     L+ FV++ D   V TLD       G   D        A   A   P     G     L+R  +L   L++P+A  L G + L V+P   L YLPF AL     G   +LIE  +V  L  A+ L  L      ++ RLLALG+PD
Sbjct:  435 GPELTSLVTVTSLRAAEIQRELGADEVLLEYYVHGTALHAFVVTRDALDVVTLDG-----VGLAEDVA------AFRTAVQNPRSTDVGR----LSR--QLFERLVRPVAGLLTGAR-LTVVPHGVLHYLPFNAL----HGGEAYLIERYSVRYLPSASVLRYLPARDGRAARRLLALGDPD 594          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A4V1UXI0_9BACT (CHAT domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4V1UXI0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.300e-7
Identity = 50/158 (31.65%), Postives = 76/158 (48.10%), Query Frame = 1
Query:  154 PTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMC----KSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPAL--AQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESL-HSSDRLLALGNPDG 606
            P +D LY F ++ D  K+     +K  L   IR +R       K     E      D S+   Q       +L   L++P+ +++   KV+A++P+  L YLPF AL  AQP  GK  FLIE+  +  L     LS     ++ ++S  +LALG+P G
Sbjct:    8 PLSDGLYIFAVTRDSLKIYHPGVTKTNLNLSIRSYRTAIDEDIKRLGRGETPFSIDDNSTPLRQSA----EQLSKWLLEPVKQEIGAAKVVAIVPSGELFYLPFHALGEAQP-DGKWQFLIEEKPMAYLAKGDVLSIAQTRNVENTSQGVLALGDPTG 160          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A7W1G914_9BACT (CHAT domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1G914_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 4.480e-7
Identity = 49/186 (26.34%), Postives = 88/186 (47.31%), Query Frame = 1
Query:    4 LAQTKSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGF------KVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLS 543
            ++Q + ++      +R    +Y  L   QP++  ++Q QL ADTLL++Y    ++ Y + I+ D        K + ++++  Q+Y    +      +    E   +  +  + A  +L A   EL   L+ P+A  L G+K L ++    L Y+PF  L  PV G+   LI    VV+L  A+ L+
Sbjct:  618 ISQLEIDYERAQTAIRKASPHYAALTQPQPLKLTEIQAQLDADTLLLEYALGEERSYLWAITKDSLTSYELPKGKLIEKNARQVY----ELLTARSTNQRGETPPQRRERIAQAEAKLPAAAQELSRTLLTPVAAQL-GNKRLVIVADGALQYIPFAMLPSPVVGRNQPLIVGHEVVSLPSASALA 798          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: X1KQR6_9ZZZZ (CHAT domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1KQR6_9ZZZZ)

HSP 1 Score: 58.9 bits (141), Expect = 6.200e-7
Identity = 47/167 (28.14%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  151 YPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSF----ALSEAALKPFDWSSGAGQ-------QLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGKPHFLIEDVAVVTLLHATDLSRL--GKESLHSSDRLLAL-GNPDGT 609
            Y   ++LY F++S +G+ VR++  S+  L   I +  ++C S       +E  L  + W              L   L+EL++ LI+PL E+L   +V+ +IP+  L Y+P+ AL    +G     + +     +L +T+L +    +E  H   R L L GNP G+
Sbjct:    3 YAGKNELYLFLLSQEGYVVRSVSISRDSLNNLITECYRLCGSRDAKRLYNEGKLMGWSWIDDGSDFYNEEVAPLKGMLSELYTYLIEPLEEELSSAEVVTIIPSGNLYYVPWGALLDA-EGDSLIFLSERYNWNILTSTELWKCIQRREGKHKRLRSLVLVGNPAGS 168          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A7W1KYL8_9BACT (Tetratricopeptide repeat protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1KYL8_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.050e-6
Identity = 43/152 (28.29%), Postives = 71/152 (46.71%), Query Frame = 1
Query:   46 LRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGF------KVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPALAQPVQGK 483
            +R    +Y  L   QP++  ++Q QL ADTLL++Y    ++ Y + I+ D        K   + QS  Q+Y    +      + A  E+  +  +  S A  +L A    L   L+ P+A  L G+K L ++    L Y+PF  L +P +G 
Sbjct:  722 IRNANPHYAALTKPQPLKLKEIQAQLDADTLLLEYALGEERSYLWAITRDSLASYELPKGEQIKQSALQVY----ELLTARSTRARGESPQQGQERISQAEAKLPAAAQALSQTLLAPVAAQL-GNKRLVIVADGALQYIPFAMLPEPTKGS 868          
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Match: A0A2V8NQC0_9BACT (CHAT domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8NQC0_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.690e-6
Identity = 38/148 (25.68%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 KSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQYYPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFALSEAALKPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLPFPA 459
            K E  + +++L  Q  +Y  L  V  V   ++Q+ LP D+ L++Y+   D++  FVIS D   +R    +++++       R     F +    ++  ++S+   +     L+ +++ L++PLA+ L   K L ++P   L Y PF A
Sbjct:  582 KKELANTLKELSKQDPDYASLQKVGIVSVEEVQRVLPEDSTLIEYFIARDEIMAFVISKDRVLIRRHICTRSRIQHLYERLRLQLDKFLIGNDYVR--EYSAQLLEATTDHLSSMYTELVEPLADALTT-KHLIIVPHGVLHYCPFHA 726          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12833.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7Z9PRX3_9BACT2.060e-2535.92CHAT domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A523R3L6_9BACT1.410e-1827.72Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
UPI0010F9DB632.650e-1831.19CHAT domain-containing protein n=1 Tax=Mesorhizobi... [more]
A0A7Z9PQZ3_9BACT2.290e-1026.00CHAT domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A538QX78_9BACT2.790e-832.97CHAT domain-containing protein n=1 Tax=Candidatus ... [more]
A0A4V1UXI0_9BACT2.300e-731.65CHAT domain-containing protein n=1 Tax=bacterium T... [more]
A0A7W1G914_9BACT4.480e-726.34CHAT domain-containing protein n=1 Tax=Pyrinomonad... [more]
X1KQR6_9ZZZZ6.200e-728.14CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7W1KYL8_9BACT2.050e-628.29Tetratricopeptide repeat protein n=1 Tax=Acidobact... [more]
A0A2V8NQC0_9BACT2.690e-625.68CHAT domain-containing protein n=1 Tax=Acidobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12833contigP-wetherbeei_contig12833:1317..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog291985.CCSI01000002_gene1519
PFAMsCHAT
Model size609
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.67e-14
EggNOG OGsCOG3209@1|root,COG3292@1|root,COG4995@1|root,COG3209@2|Bacteria,COG3292@2|Bacteria,COG4995@2|Bacteria,1PF01@1224|Proteobacteria,2U6BX@28211|Alphaproteobacteria,2K47V@204457|Sphingomonadales
DescriptionCHAT domain
Cds size609
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.3053179-CDS-P-wetherbeei_contig12833:1316..19251683185963.3053179-CDS-P-wetherbeei_contig12833:1316..1925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12833 1317..1925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12833.1.1prot_P-wetherbeei_contig12833.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12833 1317..1925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12833.1.1

>prot_P-wetherbeei_contig12833.1.1 ID=prot_P-wetherbeei_contig12833.1.1|Name=mRNA_P-wetherbeei_contig12833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
LLAQTKSEFFSVVRDLRGQGKNYGGLLSVQPVEFAQLQKQLPADTLLVQY
YPTADKLYYFVISHDGFKVRTLDQSKAQLYGWIRDFRKMCKSFALSEAAL
KPFDWSSGAGQQLLARLNELHSALIQPLAEDLQGHKVLAVIPTEYLLYLP
FPALAQPVQGKPHFLIEDVAVVTLLHATDLSRLGKESLHSSDRLLALGNP
DGT
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mRNA from alignment at P-wetherbeei_contig12833:1317..1925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12833.1.1 ID=mRNA_P-wetherbeei_contig12833.1.1|Name=mRNA_P-wetherbeei_contig12833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig12833:1317..1925+ (Phaeothamnion wetherbeei SAG_119_79)
CTACTGGCCCAGACCAAGTCCGAATTCTTCAGCGTGGTCCGCGATCTGCG CGGCCAAGGCAAAAACTATGGCGGATTACTCAGCGTTCAACCGGTCGAGT TTGCCCAGCTGCAAAAACAGCTGCCAGCCGACACCCTGCTCGTACAATAC TATCCTACCGCCGACAAACTCTACTACTTCGTAATTTCGCACGATGGATT CAAAGTGCGCACGCTGGACCAGTCCAAGGCGCAGCTCTACGGTTGGATAC GTGATTTTCGCAAGATGTGCAAAAGCTTTGCCCTCAGCGAGGCCGCTCTC AAGCCTTTTGACTGGAGCTCGGGCGCCGGGCAGCAACTGCTTGCCCGCCT CAACGAGTTGCACAGCGCCCTCATTCAGCCGCTCGCCGAAGATCTCCAAG GTCACAAGGTGCTGGCGGTGATTCCCACCGAGTACCTGCTCTACTTGCCC TTCCCCGCCCTGGCCCAGCCTGTTCAGGGAAAGCCGCATTTTCTGATCGA AGATGTCGCGGTCGTAACCCTCTTGCACGCCACCGATCTAAGTCGCCTGG GCAAGGAGAGTCTACACTCCAGCGATCGTCTGCTGGCCCTGGGTAACCCC GACGGCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12833:1317..1925+

>mRNA_P-wetherbeei_contig12833.1.1 ID=mRNA_P-wetherbeei_contig12833.1.1|Name=mRNA_P-wetherbeei_contig12833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig12833:1317..1925+ (Phaeothamnion wetherbeei SAG_119_79)
CTACTGGCCCAGACCAAGTCCGAATTCTTCAGCGTGGTCCGCGATCTGCG
CGGCCAAGGCAAAAACTATGGCGGATTACTCAGCGTTCAACCGGTCGAGT
TTGCCCAGCTGCAAAAACAGCTGCCAGCCGACACCCTGCTCGTACAATAC
TATCCTACCGCCGACAAACTCTACTACTTCGTAATTTCGCACGATGGATT
CAAAGTGCGCACGCTGGACCAGTCCAAGGCGCAGCTCTACGGTTGGATAC
GTGATTTTCGCAAGATGTGCAAAAGCTTTGCCCTCAGCGAGGCCGCTCTC
AAGCCTTTTGACTGGAGCTCGGGCGCCGGGCAGCAACTGCTTGCCCGCCT
CAACGAGTTGCACAGCGCCCTCATTCAGCCGCTCGCCGAAGATCTCCAAG
GTCACAAGGTGCTGGCGGTGATTCCCACCGAGTACCTGCTCTACTTGCCC
TTCCCCGCCCTGGCCCAGCCTGTTCAGGGAAAGCCGCATTTTCTGATCGA
AGATGTCGCGGTCGTAACCCTCTTGCACGCCACCGATCTAAGTCGCCTGG
GCAAGGAGAGTCTACACTCCAGCGATCGTCTGCTGGCCCTGGGTAACCCC
GACGGCACG
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