mRNA_P-wetherbeei_contig12818.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12818.1.1
Unique NamemRNA_P-wetherbeei_contig12818.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12818.1.1 vs. uniprot
Match: A0A835Z1E8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.400e-13
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   67 ALILATVCRLWGVGLALRGPAGSMRTAVDAMAQYQTWAVRFF 192
            ALILATVCR+WG GLALRGPAGSMR +V+ MA YQ W VR F
Sbjct:   42 ALILATVCRIWGTGLALRGPAGSMRKSVEQMANYQIWTVRLF 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12818.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1E8_9STRA6.400e-1376.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12818contigP-wetherbeei_contig12818:1740..1931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size192
Hectar predicted targeting categorysignal peptide
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.6102135-UTR-P-wetherbeei_contig12818:1739..17631683185962.6102135-UTR-P-wetherbeei_contig12818:1739..1763Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12818 1740..1763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.6204462-CDS-P-wetherbeei_contig12818:1763..19311683185962.6204462-CDS-P-wetherbeei_contig12818:1763..1931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12818 1764..1931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12818.1.1prot_P-wetherbeei_contig12818.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12818 1764..1931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12818.1.1

>prot_P-wetherbeei_contig12818.1.1 ID=prot_P-wetherbeei_contig12818.1.1|Name=mRNA_P-wetherbeei_contig12818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MHLLLRFIICRRRQALILATVCRLWGVGLALRGPAGSMRTAVDAMAQYQT
WAVRFF
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mRNA from alignment at P-wetherbeei_contig12818:1740..1931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12818.1.1 ID=mRNA_P-wetherbeei_contig12818.1.1|Name=mRNA_P-wetherbeei_contig12818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig12818:1740..1931+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTATCCCTTCCACTGTTCTTCAATGCATCTTCTCCTCCGCTTCATCAT
CTGTCGGCGGCGGCAGGCTCTCATCCTGGCGACCGTCTGCCGGCTGTGGG
GTGTGGGGCTCGCGCTGCGGGGGCCGGCGGGATCGATGCGGACGGCGGTC
GACGCGATGGCGCAGTACCAGACGTGGGCGGTTCGTTTCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12818:1740..1931+

>mRNA_P-wetherbeei_contig12818.1.1 ID=mRNA_P-wetherbeei_contig12818.1.1|Name=mRNA_P-wetherbeei_contig12818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig12818:1740..1931+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCTTCTCCTCCGCTTCATCATCTGTCGGCGGCGGCAGGCTCTCAT
CCTGGCGACCGTCTGCCGGCTGTGGGGTGTGGGGCTCGCGCTGCGGGGGC
CGGCGGGATCGATGCGGACGGCGGTCGACGCGATGGCGCAGTACCAGACG
TGGGCGGTTCGTTTCTTT
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