mRNA_P-wetherbeei_contig1281.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1281.4.2
Unique NamemRNA_P-wetherbeei_contig1281.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.690e-43
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 MSARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            MSARPV+K STM P+MQEAAIQ       VAQDA+RDNN+E+ +A+++K+AFE +YPS+WHCFVGRNFGCFVTHEHTKF Y Y+GQ+GVCLF+TA
Sbjct:    1 MSARPVIKTSTMAPDMQEAAIQ-------VAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.490e-40
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    1 MSARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            MSARPV+K STMP +MQEAAIQ       VAQDA++DNN+E+ +A +IK+ FE +YPSVWHCFVGRNFG FVTHE +KF YFY+GQMGVCLF+TA
Sbjct:    1 MSARPVIKTSTMPADMQEAAIQ-------VAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.160e-31
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 MSARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            M+ARPV+K S+M P+MQE AIQ        AQDA+   N EQ +A +I+   ETM+P+ WH  VGRNFGCFVTHE +KF YFY+GQ+GVC+FATA
Sbjct:   29 MAARPVIKHSSMTPDMQEMAIQC-------AQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.340e-30
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   16 VVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFAT 282
            VVKAS M  EMQ+AA+Q       +AQDA+R++  EQ +AS+IK  FE++Y + WHCFVGRNFGC+VTH+   F YFY+GQ+G+CLFAT
Sbjct:   41 VVKASRMEQEMQDAAVQ-------IAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.570e-22
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   16 VVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFAT 282
            +VK + M   M E AI        VA  A++  N E+  AS+IK+  E ++P VWHCFVGR FGC+VTHE +KF YFYVGQ+GVCLF++
Sbjct:   95 IVKLNQMETVMAERAID-------VALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD)

HSP 1 Score: 89.7 bits (221), Expect = 1.720e-21
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   10 RPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSV-WHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            +PVVK STM P++Q+  I        VAQ A+     EQ +A+ +K  FE  Y  + WHC VGRN  C+VTHE +KF YFY+GQM V LFATA
Sbjct:    5 KPVVKTSTMDPDLQDEVI-------LVAQHAMDTEIDEQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A7S3XKJ6_OXYMA (Dynein light chain n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XKJ6_OXYMA)

HSP 1 Score: 86.3 bits (212), Expect = 7.290e-20
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    4 SARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFAT 282
            SAR VVK + M P+M E A          A  AL +N  E+ +AS +K  FE +Y   WHC VGR+F  +VTHE   +CYFY+GQMGVCL+ T
Sbjct:   26 SARTVVKFAEMDPDMLEFAQST-------AISALENNTDEKDIASYLKREFENLYQPTWHCIVGRHFSSYVTHEKKCYCYFYIGQMGVCLWKT 111          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A067CKL0_SAPPC (Dynein light chain n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CKL0_SAPPC)

HSP 1 Score: 85.5 bits (210), Expect = 8.520e-20
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 SARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSV-WHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            S +PVVK STM  ++ +  I       +VAQ A+     EQ +A+ IK  FE  Y  + WHC VGRN  C+VTHE +KF YFY+GQM + LFATA
Sbjct:    5 SVKPVVKNSTMDQDLLDEVI-------WVAQAAIESEVNEQHIAAKIKKHFELKYHGMLWHCCVGRNMACYVTHEQSKFLYFYIGQMAIVLFATA 92          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A485KBJ8_9STRA (Dynein light chain n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KBJ8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-19
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   10 RPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSV-WHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA 285
            +PV+K STM  ++ +  I       +VAQ A+   + EQ +A+ IK  FE  Y  + WHC VGRN  C+VTHE +KF YFY+GQM V +FATA
Sbjct:    7 KPVIKNSTMDQDLLDEVI-------WVAQAAIESESNEQFIAAKIKRHFELKYHGMLWHCCVGRNMACYVTHEQSKFLYFYIGQMAVVIFATA 92          
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Match: A0A0G4I172_9ALVE (Dynein light chain n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I172_9ALVE)

HSP 1 Score: 81.3 bits (199), Expect = 3.680e-18
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   16 VVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKSAFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFAT 282
            V+K S M   M   AI         AQ A      EQ +AS +K+AFE  +   WHCFVGRNF  +VTHE  ++CYFYVGQM VCLF T
Sbjct:    7 VIKISNMDDAMLALAISK-------AQYAQEHCPNEQEIASYMKNAFEAEHEPTWHCFVGRNFASYVTHEKGRYCYFYVGQMAVCLFKT 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1281.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM6_ECTSI2.690e-4370.53Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CI24_9STRA1.490e-4069.47Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2STQ1_9STRA1.160e-3158.95Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1UG18_9STRA2.340e-3058.43Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1C452_9STRA2.570e-2251.69Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
K3WKC4_GLOUD1.720e-2150.54Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A7S3XKJ6_OXYMA7.290e-2048.39Dynein light chain n=1 Tax=Oxyrrhis marina TaxID=2... [more]
A0A067CKL0_SAPPC8.520e-2048.42Dynein light chain n=3 Tax=Saprolegniaceae TaxID=4... [more]
A0A485KBJ8_9STRA1.710e-1947.31Dynein light chain n=5 Tax=Aphanomyces TaxID=10086... [more]
A0A0G4I172_9ALVE3.680e-1849.44Dynein light chain n=1 Tax=Chromera velia CCMP2878... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1281contigP-wetherbeei_contig1281:6354..7403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRM6
PFAMsDynein_light
Model size291
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.23e-44
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size288
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.2846591-CDS-P-wetherbeei_contig1281:6353..64401683185962.2846591-CDS-P-wetherbeei_contig1281:6353..6440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1281 6354..6440 +
1683185962.29418-CDS-P-wetherbeei_contig1281:6752..68411683185962.29418-CDS-P-wetherbeei_contig1281:6752..6841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1281 6753..6841 +
1683185962.3021193-CDS-P-wetherbeei_contig1281:7288..74001683185962.3021193-CDS-P-wetherbeei_contig1281:7288..7400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1281 7289..7400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.310802-UTR-P-wetherbeei_contig1281:7400..74031683185962.310802-UTR-P-wetherbeei_contig1281:7400..7403Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1281 7401..7403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1281.4.2prot_P-wetherbeei_contig1281.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1281 6354..7400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1281.4.2

>prot_P-wetherbeei_contig1281.4.2 ID=prot_P-wetherbeei_contig1281.4.2|Name=mRNA_P-wetherbeei_contig1281.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MSARPVVKASTMPPEMQEAAIQAGGHLLFVAQDALRDNNIEQAVASSIKS
AFETMYPSVWHCFVGRNFGCFVTHEHTKFCYFYVGQMGVCLFATA*
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mRNA from alignment at P-wetherbeei_contig1281:6354..7403+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1281.4.2 ID=mRNA_P-wetherbeei_contig1281.4.2|Name=mRNA_P-wetherbeei_contig1281.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig1281:6354..7403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCCAGGCCAGTGGTGAAAGCTTCCACGATGCCGCCGGAGATGCA AGAAGCGGCAATACAGGCAGGTGGACATTTGTTATTTGTCTCTACAGCCT CGCTGTTGGCATAGATCGGCTCTGACGAAATTTGTCTCCGGAAAAAGAGG AGGCGAATCCTCGCGGGGCCTTCCGCTTTCAGTTTATCAGCTCCGCCAGC GATGGAATTTAGATCTAAATTATGCAAGCATACACGTTCACGACAACCTG TTTACTGTTGGGTCCACAGCCGCCAAGTTGCTCGTGGCCCTTGCTGGCAC GATCCTCGGTGGACCTTGAGATACGTCGAACCTCCTTTCTTTTCTTCCTT TCCCACCTTCCTGCTGCATTCTCAACGGCGCGTATCTTCTGGCTCGCAGG TCGCGCAAGACGCGCTGAGGGATAACAACATCGAGCAGGCGGTTGCCTCC TCCATCAAGTCGGCCTTCGAGACCATGTACCCGTCCGTGTGGGTCTCATT CGTTTGACTTTGTTCCTTTCGGTCTCCGTTACTCTTCCGCTTCGTTTCTG CCCGTTCCTTCTCTGCGAAAGGCAAACCACGTTATGCCGTGTTGAGCTTG TCGGATGCGGCGACTGCCCATGCGGTGGACGAGGCAGTTAATGGCTGACT TTGAAAAGGTCCCTCTTTGTTTCTTGAAAAGCTGATTTCAGCGCTTTGGG TGCCTCGCTCATTGGGACTCCTCCGCGCTAGCGGGGACCGCAGGCAGCCT CTATTGCTCTACCTCCCCACCTTTGGTATTCTTCTGTTGCTCCCTCCACC GTTTCGATCGTTTTCGACTCATCGCTTATAACTGTCAGCTCGTATCAGAG AGTCTCTAACTTAAACACAAACTGCCTTTCCAAACTTTCTCTTTAGAAAC CGCCGGTGCTTGATAACTCAAACCCGAACGCACAGGTGGCACTGCTTCGT CGGGCGGAACTTCGGCTGCTTCGTGACACACGAGCACACAAAGTTCTGCT ACTTTTACGTCGGCCAGATGGGTGTCTGCCTCTTCGCGACGGCATGACAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1281:6354..7403+

>mRNA_P-wetherbeei_contig1281.4.2 ID=mRNA_P-wetherbeei_contig1281.4.2|Name=mRNA_P-wetherbeei_contig1281.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig1281:6354..7403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCCAGGCCAGTGGTGAAAGCTTCCACGATGCCGCCGGAGATGCA
AGAAGCGGCAATACAGGCAGGTGGACATTTGTTATTTGTCGCGCAAGACG
CGCTGAGGGATAACAACATCGAGCAGGCGGTTGCCTCCTCCATCAAGTCG
GCCTTCGAGACCATGTACCCGTCCGTGTGGCACTGCTTCGTCGGGCGGAA
CTTCGGCTGCTTCGTGACACACGAGCACACAAAGTTCTGCTACTTTTACG
TCGGCCAGATGGGTGTCTGCCTCTTCGCGACGGCATGA
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