mRNA_P-wetherbeei_contig12809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12809.1.1
Unique NamemRNA_P-wetherbeei_contig12809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A3N5WLC7_9PROT (Hemoglobin-like protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WLC7_9PROT)

HSP 1 Score: 159 bits (401), Expect = 5.260e-48
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 1
Query:   22 TPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            TPYA+LGGDA +R LV++FY LMD  PE++ IRKLHP+ L GS +KLY+FLSGW+GGP LYVEK+GHPMLRARHLP+ IG  ERD W+ACM QAME   V E LR+ L
Sbjct:   11 TPYALLGGDAAVRRLVDRFYDLMDEVPEYHCIRKLHPQELSGSREKLYLFLSGWLGGPPLYVEKYGHPMLRARHLPFPIGIAERDAWLACMLQAMEDTGVEETLRMAL 118          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A142LJB4_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A142LJB4_9PROT)

HSP 1 Score: 158 bits (400), Expect = 8.200e-48
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1
Query:   10 NPGPTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            NP  TPYA++GG+A +R LV+ FY  MD +P+F+GIRKLHP +L  S +KLYMFL+GW+GGP LY  +FGHP LRARHLP+AIGE ERDQWM CM QAME   +P  +R QL
Sbjct:   10 NPERTPYAIVGGEAVVRKLVDTFYDQMDEDPDFFGIRKLHPPSLATSREKLYMFLTGWLGGPPLYTAEFGHPRLRARHLPFAIGEAERDQWMTCMTQAMEVVGIPPEMRTQL 121          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A2N2SJI3_9PROT (Globin n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-21 TaxID=2013713 RepID=A0A2N2SJI3_9PROT)

HSP 1 Score: 156 bits (395), Expect = 4.730e-47
Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   13 PGPTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            P  TPY  +GG+  +RALV++FY LMDT+PE YGIRK+H E L GS +KL++FLSGW GGPQLYVE+FG P LRARHLP++IG  ERDQWM CMGQA+E C     LR +L
Sbjct:    9 PTHTPYDEIGGEVSVRALVKRFYELMDTQPETYGIRKMHAEDLGGSEEKLFLFLSGWFGGPQLYVERFGQPFLRARHLPFSIGASERDQWMMCMGQALEECVPDAALRKRL 119          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: H5WMW6_9BURK (Hemoglobin n=1 Tax=Burkholderiales bacterium JOSHI_001 TaxID=864051 RepID=H5WMW6_9BURK)

HSP 1 Score: 155 bits (393), Expect = 8.420e-47
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   16 GPTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELL 333
            GPTP+  LGG+A +RALV++FY LMD EP F GIR+LHP +L+GS DKL+ +L GW+GGP  Y+E+FGHP LRARHLP+AIG+ ERDQWMACM QAM   ++P  L
Sbjct:   10 GPTPFEHLGGEAAVRALVDRFYDLMDLEPAFAGIRQLHPSSLDGSRDKLFWYLCGWLGGPNHYIERFGHPRLRARHLPFAIGDAERDQWMACMQQAMAERQLPPAL 115          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A2SJB2_METPP (Putative globin n=3 Tax=Methylibium TaxID=316612 RepID=A2SJB2_METPP)

HSP 1 Score: 155 bits (393), Expect = 9.240e-47
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   22 TPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELL 333
            TPY  +GG+  +RALV++FY LMD EP F+ +R+LHP TL+GS DKL+ FL GW+GGP LYVE+FGHP LRARHLPY+IG  ERDQWMACM QAM  CE+  LL
Sbjct:   13 TPYEWVGGEHAVRALVDRFYDLMDLEPGFHDLRRLHPSTLDGSRDKLFWFLCGWLGGPDLYVERFGHPRLRARHLPYSIGVRERDQWMACMEQAMHECELDPLL 116          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A6M4GVP2_9PROT (Hemoglobin-like protein YjbI n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GVP2_9PROT)

HSP 1 Score: 155 bits (392), Expect = 1.160e-46
Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   19 PTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            PTPY  +GG+  LR LV++FY LMD EP +  +R+ HP TLE    +L+MFLSGW+GGP LY ++FGHPMLRARHLP++IG VERDQWMACM QAME   + ELLRLQL
Sbjct:    8 PTPYERMGGEPVLRELVDRFYDLMDLEPGYAQLRRAHPGTLENGRKRLFMFLSGWLGGPPLYTDEFGHPMLRARHLPFSIGAVERDQWMACMAQAMEEVGLEELLRLQL 116          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: W7VVG7_9BURK (Hemoglobin-like protein YjbI n=2 Tax=unclassified Methylibium TaxID=2633235 RepID=W7VVG7_9BURK)

HSP 1 Score: 155 bits (393), Expect = 1.190e-46
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   22 TPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELL 333
            TPY  +GG+  +RALV++FY LMD EP F+ +R+LHP TL+GS DKL+ FL GW+GGP LYVE+FGHP LRARHLPY+IG  ERDQWMACM QAM  CE+  LL
Sbjct:   27 TPYEWVGGEHAVRALVDRFYDLMDLEPGFHDLRRLHPSTLDGSRDKLFWFLCGWLGGPDLYVERFGHPRLRARHLPYSIGVRERDQWMACMEQAMHECELDPLL 130          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A839VKE0_9BURK (Hemoglobin n=1 Tax=Herbaspirillum sp. Sphag64 TaxID=2587029 RepID=A0A839VKE0_9BURK)

HSP 1 Score: 154 bits (390), Expect = 2.900e-46
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   19 PTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            PT Y ++GG  KLRA+V++FY LMD EPEF GIR LHP +LEGS DK Y FLSGW GGP LYVEKFGHP LRARHLP+ IG  ERDQW+ CM  AME   + E LR +L
Sbjct:    9 PTAYELIGGADKLRAMVDRFYDLMDLEPEFAGIRALHPSSLEGSRDKTYWFLSGWSGGPNLYVEKFGHPYLRARHLPFPIGTSERDQWLRCMAWAMEDVGLEEALRTRL 117          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A3N7J2D6_9BURK (Cyanoglobin n=1 Tax=Albitalea terrae TaxID=2496871 RepID=A0A3N7J2D6_9BURK)

HSP 1 Score: 154 bits (389), Expect = 3.760e-46
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   16 GPTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEV 321
            GPTP+ +LGG+  + ALV++FY LMD EP + GIRKLHP  LEGS DKL+ FL GW+GGPQ Y+E+FGHPMLRARHLP++IG  ERDQWMACM QAME  ++
Sbjct:   11 GPTPFEVLGGEPAVLALVQRFYDLMDLEPAYAGIRKLHPSHLEGSRDKLFWFLCGWLGGPQHYIERFGHPMLRARHLPFSIGIAERDQWMACMIQAMEEVKI 112          
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Match: A0A5P2H4S3_9BURK (Group II truncated hemoglobin n=1 Tax=Cupriavidus pauculus TaxID=82633 RepID=A0A5P2H4S3_9BURK)

HSP 1 Score: 154 bits (389), Expect = 4.120e-46
Identity = 71/108 (65.74%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   22 TPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGSTDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQAMEACEVPELLRLQL 345
            T Y ++GGDA++R LV++FY LMD E +F G+R LHP TLEGS DKLY FLSGW+GGP LY+EKFGHP LRARHLP+ IG  ERDQWM CM  AME   + E LRL+L
Sbjct:   16 TAYELVGGDARVRELVDRFYDLMDLEDQFKGLRALHPTTLEGSRDKLYWFLSGWLGGPSLYIEKFGHPRLRARHLPFEIGISERDQWMRCMSMAMEDVGLSEDLRLRL 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5WLC7_9PROT5.260e-4867.59Hemoglobin-like protein n=1 Tax=Betaproteobacteria... [more]
A0A142LJB4_9PROT8.200e-4863.39Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A2N2SJI3_9PROT4.730e-4763.96Globin n=1 Tax=Betaproteobacteria bacterium HGW-Be... [more]
H5WMW6_9BURK8.420e-4764.15Hemoglobin n=1 Tax=Burkholderiales bacterium JOSHI... [more]
A2SJB2_METPP9.240e-4766.35Putative globin n=3 Tax=Methylibium TaxID=316612 R... [more]
A0A6M4GVP2_9PROT1.160e-4664.22Hemoglobin-like protein YjbI n=1 Tax=Usitatibacter... [more]
W7VVG7_9BURK1.190e-4666.35Hemoglobin-like protein YjbI n=2 Tax=unclassified ... [more]
A0A839VKE0_9BURK2.900e-4666.06Hemoglobin n=1 Tax=Herbaspirillum sp. Sphag64 TaxI... [more]
A0A3N7J2D6_9BURK3.760e-4666.67Cyanoglobin n=1 Tax=Albitalea terrae TaxID=2496871... [more]
A0A5P2H4S3_9BURK4.120e-4665.74Group II truncated hemoglobin n=1 Tax=Cupriavidus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12809contigP-wetherbeei_contig12809:1..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog420662.Mpe_A2697
Preferred nameyjbI
PFAMsBac_globin
Model size345
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06886
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-47
EggNOG OGsCOG2346@1|root,COG2346@2|Bacteria,1RH21@1224|Proteobacteria,2VSUJ@28216|Betaproteobacteria,1KM1R@119065|unclassified Burkholderiales
DescriptionBacterial-like globin
Cds size345
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.0918431-CDS-P-wetherbeei_contig12809:0..3451683185962.0918431-CDS-P-wetherbeei_contig12809:0..345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12809 1..345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12809.1.1prot_P-wetherbeei_contig12809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12809 1..345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12809.1.1

>prot_P-wetherbeei_contig12809.1.1 ID=prot_P-wetherbeei_contig12809.1.1|Name=mRNA_P-wetherbeei_contig12809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MSANPGPTPYAMLGGDAKLRALVEKFYSLMDTEPEFYGIRKLHPETLEGS
TDKLYMFLSGWMGGPQLYVEKFGHPMLRARHLPYAIGEVERDQWMACMGQ
AMEACEVPELLRLQL
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mRNA from alignment at P-wetherbeei_contig12809:1..345-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12809.1.1 ID=mRNA_P-wetherbeei_contig12809.1.1|Name=mRNA_P-wetherbeei_contig12809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig12809:1..345- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCGAATCCCGGCCCCACGCCCTACGCGATGCTCGGCGGCGACGC GAAGCTGCGCGCGCTGGTCGAAAAGTTCTACTCCCTGATGGACACCGAAC CCGAGTTTTACGGCATCCGCAAGCTCCACCCGGAGACGCTCGAGGGCTCG ACCGACAAGCTGTACATGTTCCTGTCCGGCTGGATGGGCGGCCCGCAGCT GTACGTCGAGAAGTTCGGCCACCCGATGCTGCGCGCGCGGCACCTGCCGT ACGCCATCGGCGAGGTCGAACGCGACCAGTGGATGGCCTGCATGGGCCAG GCCATGGAGGCCTGCGAAGTGCCGGAGTTGCTGCGCCTGCAACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12809:1..345-

>mRNA_P-wetherbeei_contig12809.1.1 ID=mRNA_P-wetherbeei_contig12809.1.1|Name=mRNA_P-wetherbeei_contig12809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig12809:1..345- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCGAATCCCGGCCCCACGCCCTACGCGATGCTCGGCGGCGACGC
GAAGCTGCGCGCGCTGGTCGAAAAGTTCTACTCCCTGATGGACACCGAAC
CCGAGTTTTACGGCATCCGCAAGCTCCACCCGGAGACGCTCGAGGGCTCG
ACCGACAAGCTGTACATGTTCCTGTCCGGCTGGATGGGCGGCCCGCAGCT
GTACGTCGAGAAGTTCGGCCACCCGATGCTGCGCGCGCGGCACCTGCCGT
ACGCCATCGGCGAGGTCGAACGCGACCAGTGGATGGCCTGCATGGGCCAG
GCCATGGAGGCCTGCGAAGTGCCGGAGTTGCTGCGCCTGCAACTG
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