mRNA_P-wetherbeei_contig12807.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12807.2.1
Unique NamemRNA_P-wetherbeei_contig12807.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: D8LJ83_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ83_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 9.220e-33
Identity = 74/186 (39.78%), Postives = 111/186 (59.68%), Query Frame = 1
Query:    4 PLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLC-GAGVVAGAG---SYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCGAATAAD 549
            PLV++ +      + +A  ++VV +LYS  CP TC  F +LC G   ++  G   +Y+G+ FHRVVRDGWVQGG       + +G+   + Y   +  E+FA++ +  G++A A+DG       +N SQF V+LAP P+++   V FGRV+KGL   R MSE ETLN+ P++ C++  CG  T  D
Sbjct:   87 PLVFMDISL----DPSARPQRVVFQLYSQDCPTTCENFRALCTGEKGMSSNGKKLNYKGSPFHRVVRDGWVQGG----DIVSGTGDGGWSIYGEVFGDESFAIKLNETGVLAMANDGP-----HTNGSQFLVTLAPQPWLNHKVVGFGRVIKGLKVLREMSEGETLNQRPVMECKVHKCGQITPED 259          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A2R5GQQ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQQ7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.640e-30
Identity = 73/164 (44.51%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   49 AANQEKVVIELYSAVCPETCARFASLCGAGVVAGAGSYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCGAAT 540
            + ++ +VVIELY  +CP TC  F  LC       A  Y+G+ FHRVV  GWVQGG        HS   AA   +G +  ETFA++ DR G+V+ AS+G       +N SQFFV+LAPL ++D   VAFGRVV G+DAF  +  +   NE P+  C+I  CG  T
Sbjct:  169 SGSRHRVVIELYDDICPNTCDNFVLLCQENN--DAQGYKGSSFHRVVEGGWVQGGDVVDGSGKHS--VAAIDKSGRFPDETFAIKHDRAGVVSMASEGKP----HTNGSQFFVTLAPLKWLDCKRVAFGRVVYGMDAFFAIEGMPRKNERPMGRCEITSCGIFT 324          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A7S1GER1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GER1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.570e-29
Identity = 77/182 (42.31%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLCGAGVVAGAGSYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCGAATAA 546
            +P  Y  V  G G+      E+VV EL++  CP T   F SLC AG      SY GT FHRVV  GWVQG  G        G EAAA   G  + E+F ++ DRPG++A A+DG    G  SN SQF+++LA LP++D+  VAFGRV+ G+   RR+ +    N+ P+  C I   G  T+A
Sbjct:  123 NPFAYFDVSVGGGKA-----ERVVFELFADKCPRTVENFLSLC-AGTKGRGHSYVGTPFHRVVPGGWVQG--GDTAGGHGDGGEAAA--GGTIADESFEIKHDRPGILAMANDG----GPHSNGSQFYITLAELPWLDYKRVAFGRVISGMRVVRRLEKETCENQRPVAPCVIQAAGEYTSA 290          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: F0XVA5_AURAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVA5_AURAN)

HSP 1 Score: 114 bits (286), Expect = 8.930e-29
Identity = 74/194 (38.14%), Postives = 102/194 (52.58%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASL-----------CGAGVVAGAGSYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCGAATAAD 549
            H  V+L V+F    +      KVV+ELY+ +CP+TC  F +L           C          YRG  FHRVV  GWVQ G      D   G   +A      + E FAV+FD PG++A A+DG       +N++QFF++L  L ++D +AVAFGRVVKG+   R++  L T NE P+  C+I +CG     D
Sbjct:    7 HQFVFLDVQFNANTQNN-KPRKVVLELYNQLCPKTCFNFRALTTGELGKREAECHGEKKELLLHYRGAPFHRVVPGGWVQSG------DIFDGSGGSAKIVEDAADENFAVKFDAPGVLAMANDGA-----HTNNTQFFITLNALDWLDKTAVAFGRVVKGMATIRQIGALPTKNERPVDDCKIHNCGIINLKD 188          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A7S2CME5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CME5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.520e-28
Identity = 66/167 (39.52%), Postives = 101/167 (60.48%), Query Frame = 1
Query:   13 YLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLCGAGVVAGAGS---YRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPI 504
            Y+ ++ G+ +      +KV+ EL +  CP+TC  F +LC      G  S   Y+G  FHRVV+D W+QGG       +  G+  A+ +   ++ E+FAV+FD PG++A A+ G       +N+SQFFV+LAPLPF+D   VAFGRV++G++  R +  LE +NE P+
Sbjct:  120 YIYIKIGDNKA-----KKVIFELCTKECPKTCENFVALCD-----GKDSKLRYKGAPFHRVVKDAWIQGG----DIVSGRGDGGASIFGETFADESFAVKFDSPGILAMANTGA-----HTNNSQFFVTLAPLPFLDCQNVAFGRVIRGMNVIRAVERLECVNERPV 267          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A8K1C548_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C548_PYTOL)

HSP 1 Score: 117 bits (292), Expect = 2.400e-28
Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 1
Query:   64 KVVIELYSAVCPETCARFASLCGAGVVAGAG------SYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCG 531
            +V IEL++ +CP TCA F + C  G+V          SY+G   HRVV+ GW+Q G      + H      + Y  G+  E+FAV  D+ G+V+ A++GV      +N SQFF+++APLP++D   VAFGRVV GL     ++ LET+ E P V C+IVD G
Sbjct:  168 RVEIELFARICPRTCANFVAFCE-GIVPDISDESSMLSYKGNYVHRVVKGGWIQAGDVSQGPNGHGNGPLRSLYGMGFPDESFAVSHDQIGIVSMANNGVP----HTNGSQFFITVAPLPWLDKKKVAFGRVVSGLTTIHAIAALETVQERPCVPCKIVDAG 324          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A8C9RVG8_SCLFO (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RVG8_SCLFO)

HSP 1 Score: 115 bits (287), Expect = 6.530e-28
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLC----GAGVVAGAGSYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCG 531
            H  VY+ V  G    G     +++ EL+S +CP+TC  F SLC    G        SY+G+ FHRVV +GW+QGG        + GE    P    +  E+FAV  ++ G++  A+ G       SN SQF+++L P P+MD S VAFGR + G +  ++M  L T NE P   C+IVDCG
Sbjct:  122 HTFVYMDVEIGGEPAG-----RLLFELFSDLCPKTCKNFESLCTGERGLSQSNTLLSYKGSLFHRVVPNGWIQGGDISPESRGNGGESIYGPT---FEDESFAVSHNKRGILGMANAGP-----HSNGSQFYITLQPTPWMDRSYVAFGRAIDGSEVLKKMESLSTSNERPTQPCKIVDCG 289          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A8D2J2J1_VARKO (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J2J1_VARKO)

HSP 1 Score: 114 bits (286), Expect = 8.630e-28
Identity = 70/183 (38.25%), Postives = 102/183 (55.74%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLC-GAGVVAGAG---SYRGTRFHRVVRDGWVQGGGGXXXXDAHSG--EEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCG 531
            H  V+  +   E   G     K+V ELYS +CP+TC  F  LC G   +  +G   SYR + FHR+V++GW+QGG      D H G  +   + Y   +  E FAV  DR G++  A+ G       SN SQF+++L P P+++   VAFG V++G D  +R+    TLNE P+V C+I++CG
Sbjct:  120 HVFVFFEIAIQESPIG-----KLVFELYSDICPKTCRNFQCLCTGEKQLPESGLALSYRDSIFHRLVKNGWIQGG------DIHGGRGDGGESIYGPIFEDENFAVPHDRRGVLGMANKGR-----HSNGSQFYITLQPAPYLNDKYVAFGYVIEGSDVLQRLEATNTLNERPVVECKIINCG 286          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A7S2W0P3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0P3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.560e-27
Identity = 69/168 (41.07%), Postives = 96/168 (57.14%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLCGAGVVAGAGSYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPI 504
            +P  ++ ++ G+ +       +VV ELY   CP+TC  F  LC +       SY+GT FHRVV  GWVQGG      D   G+     +   ++ E+FAV F  PG++A AS G       SNSSQFFV+L PL +M+  +VAFGRVVKG+  FRR+  ++  NE P+
Sbjct:  128 NPYCFMEIKVGDSKP-----RRVVYELYHHTCPKTCENFVGLCTSRDA--KQSYKGTPFHRVVPGGWVQGG-DTVNGDGTGGQSI---FGAPFADESFAVPFSAPGVLAMASSGP-----HSNSSQFFVTLEPLEWMNSRSVAFGRVVKGMAVFRRIESVDLRNEAPV 279          
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Match: A0A7K4KLI0_9AVES (Peptidyl-prolyl cis-trans isomerase (Fragment) n=2 Tax=Tinamidae TaxID=8803 RepID=A0A7K4KLI0_9AVES)

HSP 1 Score: 113 bits (283), Expect = 2.640e-27
Identity = 63/181 (34.81%), Postives = 101/181 (55.80%), Query Frame = 1
Query:    1 HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLCGAGVVAGAG----SYRGTRFHRVVRDGWVQGGGGXXXXDAHSGEEAAAPYNGGYSFETFAVRFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKGLDAFRRMSELETLNECPIVHCQIVDCG 531
            H  VYL +   E   G      ++ EL+S VCP+TC  F  LC  G+ +       +Y+ + FHRVV++GW+QGG       A  G+E  + Y   +  E FA+R  + G++  A+ G       SN SQF+++L P P++D   VAFG++++G +  +++  + T NE P+  C+IV+CG
Sbjct:  125 HVFVYLDITIQEQPIGT-----LLFELFSDVCPKTCENFCVLCTGGITSPFSGLHLTYKNSVFHRVVKNGWIQGG----DIVAGRGDEGESIYGPTFEDENFAIRHSKRGILGMANKGR-----HSNGSQFYITLQPTPYLDKKHVAFGQLIEGTETLQKLEAVSTYNERPVEECKIVNCG 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12807.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ83_ECTSI9.220e-3339.78Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A2R5GQQ7_9STRA1.640e-3044.51Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hondae... [more]
A0A7S1GER1_9STRA1.570e-2942.31Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0XVA5_AURAN8.930e-2938.14Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoc... [more]
A0A7S2CME5_9STRA1.520e-2839.52Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A8K1C548_PYTOL2.400e-2841.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8C9RVG8_SCLFO6.530e-2838.67Peptidyl-prolyl cis-trans isomerase n=3 Tax=Sclero... [more]
A0A8D2J2J1_VARKO8.630e-2838.25Peptidyl-prolyl cis-trans isomerase n=2 Tax=Varanu... [more]
A0A7S2W0P3_9STRA2.560e-2741.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7K4KLI0_9AVES2.640e-2734.81Peptidyl-prolyl cis-trans isomerase (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12807contigP-wetherbeei_contig12807:497..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJ83
Preferred namePPIL6
PFAMsPro_isomerase
Model size549
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K12739
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Exons1
Evalue1.51e-33
EggNOG OGsCOG0652@1|root,KOG0546@2759|Eukaryota
Ec32 ortholog descriptionradial spoke protein 12
Ec32 orthologEc-02_005120.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size549
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185962.06736-CDS-P-wetherbeei_contig12807:496..10451683185962.06736-CDS-P-wetherbeei_contig12807:496..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12807 497..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12807.2.1prot_P-wetherbeei_contig12807.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12807 497..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12807.2.1

>prot_P-wetherbeei_contig12807.2.1 ID=prot_P-wetherbeei_contig12807.2.1|Name=mRNA_P-wetherbeei_contig12807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
HPLVYLTVRFGEGEEGAANQEKVVIELYSAVCPETCARFASLCGAGVVAG
AGSYRGTRFHRVVRDGWVQGGGGSGGGDAHSGEEAAAPYNGGYSFETFAV
RFDRPGMVAFASDGVGGGGGASNSSQFFVSLAPLPFMDFSAVAFGRVVKG
LDAFRRMSELETLNECPIVHCQIVDCGAATAAD
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mRNA from alignment at P-wetherbeei_contig12807:497..1045-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12807.2.1 ID=mRNA_P-wetherbeei_contig12807.2.1|Name=mRNA_P-wetherbeei_contig12807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig12807:497..1045- (Phaeothamnion wetherbeei SAG_119_79)
CATCCTCTCGTTTATCTGACTGTGCGGTTCGGAGAGGGAGAAGAAGGCGC GGCGAACCAGGAAAAGGTGGTCATCGAATTATACTCGGCCGTGTGCCCAG AAACCTGCGCCCGTTTCGCGTCGCTCTGCGGCGCCGGCGTGGTTGCCGGC GCCGGCAGCTACCGCGGAACGAGATTCCATCGCGTGGTGCGCGACGGATG GGTGCAAGGCGGCGGCGGCAGCGGCGGCGGCGACGCCCACAGCGGCGAGG AGGCTGCGGCGCCGTACAATGGCGGCTATTCCTTTGAAACATTTGCCGTG CGCTTTGACCGGCCCGGCATGGTGGCGTTCGCGAGCGATGGCGTCGGCGG CGGCGGTGGTGCGTCCAACAGCAGCCAATTTTTCGTCTCCCTGGCGCCGC TTCCCTTCATGGACTTCAGCGCGGTCGCCTTCGGCCGCGTGGTAAAAGGA CTGGATGCTTTCCGGAGGATGAGCGAGCTGGAGACTCTCAACGAGTGCCC GATCGTGCATTGTCAGATTGTGGACTGTGGAGCTGCCACAGCAGCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12807:497..1045-

>mRNA_P-wetherbeei_contig12807.2.1 ID=mRNA_P-wetherbeei_contig12807.2.1|Name=mRNA_P-wetherbeei_contig12807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig12807:497..1045- (Phaeothamnion wetherbeei SAG_119_79)
CATCCTCTCGTTTATCTGACTGTGCGGTTCGGAGAGGGAGAAGAAGGCGC
GGCGAACCAGGAAAAGGTGGTCATCGAATTATACTCGGCCGTGTGCCCAG
AAACCTGCGCCCGTTTCGCGTCGCTCTGCGGCGCCGGCGTGGTTGCCGGC
GCCGGCAGCTACCGCGGAACGAGATTCCATCGCGTGGTGCGCGACGGATG
GGTGCAAGGCGGCGGCGGCAGCGGCGGCGGCGACGCCCACAGCGGCGAGG
AGGCTGCGGCGCCGTACAATGGCGGCTATTCCTTTGAAACATTTGCCGTG
CGCTTTGACCGGCCCGGCATGGTGGCGTTCGCGAGCGATGGCGTCGGCGG
CGGCGGTGGTGCGTCCAACAGCAGCCAATTTTTCGTCTCCCTGGCGCCGC
TTCCCTTCATGGACTTCAGCGCGGTCGCCTTCGGCCGCGTGGTAAAAGGA
CTGGATGCTTTCCGGAGGATGAGCGAGCTGGAGACTCTCAACGAGTGCCC
GATCGTGCATTGTCAGATTGTGGACTGTGGAGCTGCCACAGCAGCCGAC
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