mRNA_P-wetherbeei_contig12802.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12802.1.1
Unique NamemRNA_P-wetherbeei_contig12802.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A3D5DBQ9_9GAMM (Transcription-repair-coupling factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DBQ9_9GAMM)

HSP 1 Score: 830 bits (2143), Expect = 1.100e-288
Identity = 415/645 (64.34%), Postives = 513/645 (79.53%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLS-GDEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRRRRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            +Y D+  GLAPAGIEYYLPLFFD LD L DY+P+D+L+ VDE +EA   RF  AV +RYEQLR+D+ERP++ P R+F    ++L  LK Y    +S L  G+      F T    ++ ID  AA+P  L+   +K   GRVL LADS GRRE+MLELF     RP+ F SW +FL+    VG+AVA+L EG E+  P + L+TE QLFGERA QRRRRR   D++++I++L EL+ G+PVVHE HG+GRY  LEVLT+G   NEFIK+EYADGD LYVPV++L+ I+RYSGVDP HAP+HKLGSGQWE+A+++A + I DVAAELLE+HARR AR G+ FT+DR  + AF   FPFEETPDQ +AIE VL DM+  +PMDRLVCGDVGFGKTEVAMRAAF+A N+G QVA+LVPTTLLA+QHY++  DRFADWP+R+  LSRF  + ET+  LAG+  GTVDIV+GTHKLLG D+ FK LGLL+IDEEHRFGVRQKEKIKA+R+D+DILTLTATPIPR+LN+AL+GTRELSII+TAPS+RLAIKTF+REWS+ L++EA+LREI RGGQVYFVHNEVE+IE++A+ +A +AP AR++ AHGQMRE ELE VMLDFYH RCN+L+CTTIIE+ IDVPNAN +IINRA
Sbjct:  252 IYNDISGGLAPAGIEYYLPLFFDHLDTLFDYIPSDSLIFVDEELEAGATRFREAVNDRYEQLRYDMERPILPPDRMFLNLEDVLESLKMYPRTHLSSLDLGENEKNFRFNTRAGAKLTIDGHAASPLRLVLSFLKNYDGRVLFLADSNGRRETMLELFNSNNIRPKFFGSWEDFLNGTDTVGLAVASLSEGVELVNPAICLVTEFQLFGERALQRRRRRTRLDKDSIIKSLAELQLGSPVVHEDHGIGRYRGLEVLTIGSTENEFIKLEYADGDKLYVPVASLNLINRYSGVDPAHAPIHKLGSGQWERAKKRATKCIYDVAAELLEVHARREARAGYRFTLDRDAYTAFCQDFPFEETPDQQDAIEAVLVDMENIRPMDRLVCGDVGFGKTEVAMRAAFVAANEGRQVAVLVPTTLLAQQHYQTFLDRFADWPIRVKPLSRFRAANETRTVLAGLRAGTVDIVIGTHKLLGADVVFKDLGLLIIDEEHRFGVRQKEKIKAIRSDVDILTLTATPIPRSLNLALSGTRELSIISTAPSKRLAIKTFLREWSDGLVQEALLREISRGGQVYFVHNEVESIEKIAKDIARLAPAARVSFAHGQMREKELERVMLDFYHRRCNILVCTTIIESGIDVPNANTIIINRA 896          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A1Z9UIZ4_9GAMM (Transcription-repair-coupling factor n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UIZ4_9GAMM)

HSP 1 Score: 827 bits (2137), Expect = 8.040e-288
Identity = 418/645 (64.81%), Postives = 511/645 (79.22%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQ-RRRRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            +Y DV EGLAPAGIEYYLPLF ++ ++L+DY+P+D +VI DE++E   ++F ++V ERYE LRHD  RP++    +FA   EL + L+  ACV +SG S  +    +F T  PV VP+DAR+  PF  +  H+ R  GR+L LADSLGRRE++L+LF+ Q F P  F  W EFL +D   GIAVA+L  GAE+ EPRLS+LTE QLFG R  Q RRR+R+    E++IRNLTEL   +PVVHE +GVGRY+ LEVLTVG + NEFIKIEY DGD LY+PV +LD ISRYSG DP+HAPLHKLG+ QWEKARRKA EKIRDVAAELLEIHA+RA R+G +F +D   + +F  +FPFEET DQ NA++ VL DMQ  QPMDRL+CGDVGFGKTEVA+RAA +AVNDG QVAILVPTTLLA QH+E+ +DRFA  PVR+  LSRF + K+T+  +  +  GTVDIV+GTHKLL K+I+FKRLGLLV+DEEHRFGV QKEKIK+LRAD+DILTLTATPIPRTLN+AL+GTRELSIIAT P +RLA+KTFVREWS +L+REAILREI RGGQVY+VHN+VE+IE+  + +  I PEARIAVAHGQMRE +LE VMLDF HGR NVL+C+TIIET +D+PNAN M+INRA
Sbjct:  250 IYXDVSEGLAPAGIEYYLPLFHEETNVLADYIPSDCVVIFDESIEIAADKFRLSVDERYEALRHDTARPILATKDIFAEFEELQSSLQTLACVYLSGTSNSD-SPAKFNTVVPVNVPVDARSEDPFIAIKHHLSRMNGRLLFLADSLGRREALLDLFRDQIFSPVVFAGWREFLGADERYGIAVASLENGAELIEPRLSILTESQLFGRRTXQXRRRKRSRXSHESIIRNLTELNVNSPVVHEDYGVGRYLGLEVLTVGDIQNEFIKIEYRDGDKLYIPVGSLDLISRYSGSDPEHAPLHKLGTDQWEKARRKAGEKIRDVAAELLEIHAKRALRRGXSFVIDEDAYNSFVHSFPFEETVDQANAVDAVLKDMQNPQPMDRLICGDVGFGKTEVALRAACVAVNDGFQVAILVPTTLLATQHHETFRDRFAKLPVRVELLSRFRNIKQTREVVGALESGTVDIVIGTHKLLSKEIKFKRLGLLVVDEEHRFGVVQKEKIKSLRADVDILTLTATPIPRTLNLALSGTRELSIIATPPLKRLAVKTFVREWSKTLIREAILREISRGGQVYYVHNQVESIEKEVKKLERIVPEARIAVAHGQMREQQLEQVMLDFSHGRINVLVCSTIIETGLDIPNANTMLINRA 893          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A1G0JBZ0_9GAMM (Transcription-repair-coupling factor n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11 TaxID=1798301 RepID=A0A1G0JBZ0_9GAMM)

HSP 1 Score: 779 bits (2011), Expect = 9.770e-269
Identity = 389/646 (60.22%), Postives = 498/646 (77.09%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLS-GDEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRR-RRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            VY+DV +GLAPAGIEYYLPLF+ + + L DY+  D +VI+DE +    E F   + +RYEQ RHD+ERPL+ P  L+ +  +L   +K +  + V+G++ G+    + ++T  PV++PIDAR   P  +L   I    GR L+ A+S GRRE++LE+F+Q    P  F  W+ FLS+   +G+  AAL +GA+I +P + +++E QLFG+R  QRR R+R   D EA+IRNLTEL  GAPVVHE +GVGRY  L  L +  +  EFI IEYA  D LYVPV++LD ISRY+GVDP+HAPLH+LGSGQWEKA++KA +++ DVAAELL++HARR AR G++FTVD   + AF  +FPFEETP Q +AI+ V+ DMQ  +PMDRL+CGD GFGKTEVAMRAAFIAV +G QVA+LVPTTLLA+QHY++ KDRFADWPV+I  LSRF   KE +  L G+ADGTVDIV+GTHKL+  +++F+RLGLL+IDEEHRFGVRQKEK KALR++ID+LTLTATPIPRTLNMAL+  RELSIIAT P+RRL++KTFVREWSNSLLREA+LREI RGGQVYF++N++E IE+ A+ +  + PEAR+ +AHGQM E ELE VMLDFYH R NVL+CTTIIET IDVP+AN +IINRA
Sbjct:  253 VYRDVSQGLAPAGIEYYLPLFYQETNTLFDYIADDAVVILDEDIRQTMEGFWKDIEDRYEQCRHDIERPLLPPGELYLSQQDLFTRIKPFTRIYVTGMAQGERAHAINYSTSIPVQLPIDARLPEPLGVLKRFIDGFEGRTLIAAESSGRRETLLEMFRQHALFPTQFPDWSAFLSATDKLGLVTAALEQGAQISDPEIVIISESQLFGDRVQQRRLRKRRQQDSEAIIRNLTELTAGAPVVHEDNGVGRYQGLVTLNINDIPAEFICIEYAQSDKLYVPVASLDLISRYAGVDPEHAPLHRLGSGQWEKAKQKAAQRVYDVAAELLDMHARRLARSGNSFTVDENEYFAFIQSFPFEETPGQADAIKAVIEDMQQPKPMDRLICGDAGFGKTEVAMRAAFIAVQNGRQVALLVPTTLLAQQHYQNFKDRFADWPVKIESLSRFRTGKEQEKVLQGLADGTVDIVIGTHKLIQNNVKFQRLGLLIIDEEHRFGVRQKEKFKALRSEIDVLTLTATPIPRTLNMALSSLRELSIIATPPARRLSVKTFVREWSNSLLREALLREINRGGQVYFLYNQIETIEKTAREIETLMPEARVRIAHGQMPEKELEQVMLDFYHRRFNVLVCTTIIETGIDVPSANTIIINRA 898          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A661BW16_9GAMM (Transcription-repair-coupling factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BW16_9GAMM)

HSP 1 Score: 774 bits (1998), Expect = 8.890e-267
Identity = 398/646 (61.61%), Postives = 490/646 (75.85%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDE-VGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRR-RRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            VY+DV +GLAPAGIEYYLPLF+++ + L DYLP + + I DE      E F   +  RYEQ RHDVERP++ P  +F  P++LL+  K Y  + ++     E  G   + T  P  + IDAR+A P +L    +    GR+LL+A+S GRRE++L+LFQQ   +P   D+W+EF+     +G+ VA L  GA+++ P ++L++EGQLFGER  QRR R+R   D E +IRNLTEL  GAPVVHE+HGVGRY  L  L VG +  EFI IEYADGD LYVPVSALD ISR++GVDP+HAPLH+LGSGQWEKA+RKA +++ DVAAELLE+HA+RAAR G  F +D   + AF   FPFEETP Q++AI  V+ DM  A+PMDRLVCGD GFGKTEVAMRA+FIAV +G QVAILVPTTLLA+QHY++ KDRFADWPVR+  LSRF   KE   TL GI DGTVDIV+GTHKL+  +I F RLGLL+IDEEHRFGVRQKEK KA+RA+ID+LTLTATPIPRTLNMALA  RE SIIAT P++RLA+KTFVREW+++LL+EA+LREI RGGQVY +HN+VE IE+MA+ V  + PEA +  AHGQM E ELE VMLDFYH R NVL+CTTIIET IDVP+AN +IINRA
Sbjct:  253 VYRDVSQGLAPAGIEYYLPLFYEETNTLFDYLPDECITIFDEDAIDTSESFWQDIETRYEQNRHDVERPVLPPRDMFLNPSDLLSRTKIYHQIHITHREQQERAGASNYDTTLPASLMIDARSADPLSLFKRFVSDFDGRILLVAESAGRRETLLDLFQQHDIKPVQLDNWSEFIQGQDRLGLTVAPLEHGAQLENPGIALISEGQLFGERVMQRRLRKRKQQDSENIIRNLTELTLGAPVVHEEHGVGRYQGLIALDVGDIPAEFIYIEYADGDKLYVPVSALDLISRFTGVDPEHAPLHRLGSGQWEKAKRKAAKRVHDVAAELLELHAQRAARPGFNFELDENAYRAFVQTFPFEETPGQMDAIMDVIDDMTQAKPMDRLVCGDAGFGKTEVAMRASFIAVQNGKQVAILVPTTLLAQQHYQNFKDRFADWPVRVELLSRFRTGKEQNITLKGIEDGTVDIVIGTHKLIQGNIEFARLGLLIIDEEHRFGVRQKEKFKAIRAEIDVLTLTATPIPRTLNMALADLREFSIIATPPAKRLAVKTFVREWNDALLKEALLREIKRGGQVYVLHNKVETIEKMARQVEALLPEASVRWAHGQMPEKELEQVMLDFYHRRFNVLVCTTIIETGIDVPSANTIIINRA 898          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A369C9H2_9GAMM (Transcription-repair-coupling factor n=1 Tax=Thioalbus denitrificans TaxID=547122 RepID=A0A369C9H2_9GAMM)

HSP 1 Score: 764 bits (1972), Expect = 9.640e-263
Identity = 395/646 (61.15%), Postives = 490/646 (75.85%), Query Frame = 1
Query:    4 YQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDE-VGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRRRRRATT--DQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            YQDV +G+APAG+EYYLPLFF+    L DYLP  TLV     V +  E F     ER+EQLRHD   PL+ PARLF    EL A L AY+ V++     D       FAT  P  + +D RA  P   L   +    GRVLL A++ GRRES+LEL QQ P +PRA DSW  F+ S+A   IAVA L +G  +    L+++TE QLFGE+  QRRRR  T   D +AV+R+LTELR GA VVHE+HGVGRY+ L+V+ +G    EF+ +EYA GD LYVPVS+L  +SRY+GVDPD APLH+LGS QW+KARRKA E++RDVAAELL+++ARRAARKGHAF      +AAF  +FPFEETPDQ  AIE VLAD++  +PMDRLVCGDVGFGKTEVAMRAAF+AV DG QVA+LVPTTLLA+QHY++ +DRFADWPVRI  LSRF   ++   TL  +ADG  DIV+GTHKLL +++RFKRLGL++IDEEHRFGVRQKE++K LR+++DILTLTATPIPRTLNMA++G R+LSIIAT P+RRL+IKTFVRE +++++REAILRE+ RGGQVY++HNEVE+IE +A+ V  + PEAR+++AHGQMRE ELE VM DFYH R NVL+CTTIIET ID+P AN +I++RA
Sbjct:  262 YQDVSQGIAPAGVEYYLPLFFESCATLFDYLPEATLVTYTAGVLSSAETFWDEAGERHEQLRHDSSHPLLPPARLFLQAHELFASLAAYSRVEIHRDPLDPGAAHRNFATDPPPSLTVDRRAEQPLQRLAGFLDAFAGRVLLCAETAGRRESLLELLQQLPLQPRACDSWQSFVDSEAQAAIAVAPLDQGILLPAGGLAVITESQLFGEQIRQRRRRVRTRERDSDAVVRDLTELRTGAAVVHEEHGVGRYLGLQVIQLGDQAGEFLTLEYAGGDKLYVPVSSLHLVSRYTGVDPDQAPLHRLGSEQWQKARRKAAEQVRDVAAELLDLYARRAARKGHAFDYATDQYAAFAESFPFEETPDQEQAIESVLADLRSPRPMDRLVCGDVGFGKTEVAMRAAFVAVQDGRQVAVLVPTTLLAQQHYDNFRDRFADWPVRIEVLSRFGGKRQQGETLDAVADGRADIVIGTHKLLQENVRFKRLGLVIIDEEHRFGVRQKERLKTLRSEVDILTLTATPIPRTLNMAISGMRDLSIIATPPARRLSIKTFVRERNSAVIREAILREVLRGGQVYYLHNEVESIERLAREVEALVPEARVSIAHGQMRERELERVMSDFYHRRFNVLVCTTIIETGIDIPTANTIIMDRA 907          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A6N1DMC0_9GAMM (Transcription-repair-coupling factor n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DMC0_9GAMM)

HSP 1 Score: 761 bits (1966), Expect = 5.370e-262
Identity = 388/646 (60.06%), Postives = 482/646 (74.61%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLS-GDEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRRRRRATT-DQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            +Y++V +G APAGIEYYLPLFFD    L DYLP  T+ +  E V    E +   +A RYEQ RHD +RPL+ P  +F    +L   L+A+A V+          G+   AT  P  + IDARA  P A L   +    GRVL  A++ GRRES+LEL +     P   + W  F + DA   I VA L +G  ++ P ++++TE QLFGER  QRRRRR  + D E V+R+L EL  GAPVVHE HGVGRY+ L+ L VGGVT EF+ +EYA GD LYVPVS+L  ISRY+G  P+ APLHKLGSGQWEKA+R+A E++RDVAAELL+I+ARRAAR+GHA  +D   +AAF A FPFEETPDQ  AI+ VL DM+  +PMDRLVCGDVGFGKTEVAMRAAF+AV DG QVA+LVPTTLL +QH ++ +DRFADWPVR+  LSRF   KE +A ++ + DGTVDIV+GTHKLL +DIRFKRLGL++IDEEHRFGVRQKE+ K+LRA++D+LTLTATPIPRTLNMALA  R+LS+IATAP+RRLA+KTFV EW+++L++EA LRE+ RGGQVYF+HN+VE IE  A+ +  + P+AR+AVAHGQMRE ELE VM DFYH R NVL+CTTIIET IDVP+AN ++INRA
Sbjct:  250 IYREVSQGNAPAGIEYYLPLFFDATATLFDYLPTGTVAVTVEDVHGAAETYWEEIAHRYEQRRHDTQRPLLPPLDMFLPTDQLFGALRAFARVESQRFEQAAGAGRSNLATQHPPPLAIDARATRPAARLQSFLAEFPGRVLFAAETAGRRESLLELLRGIDVTPTLVEDWRAFATGDAHCAITVAPLEQGLVLEHPPIAVVTEAQLFGERVLQRRRRRGRSRDSEQVVRSLAELTEGAPVVHEDHGVGRYLGLQTLDVGGVTTEFLTLEYAGGDKLYVPVSSLHLISRYAGAAPESAPLHKLGSGQWEKAKRRASERVRDVAAELLDIYARRAARQGHAAKLDDGQYAAFAAGFPFEETPDQQAAIDAVLEDMRAPRPMDRLVCGDVGFGKTEVAMRAAFVAVQDGRQVAVLVPTTLLVQQHTQTFRDRFADWPVRVEGLSRFRSKKEQEAVVSAVTDGTVDIVIGTHKLLQEDIRFKRLGLVIIDEEHRFGVRQKERFKSLRAEVDVLTLTATPIPRTLNMALASLRDLSVIATAPARRLAVKTFVHEWNDNLIQEACLREVKRGGQVYFLHNDVETIERQARELEALVPQARVAVAHGQMRERELERVMSDFYHHRYNVLVCTTIIETGIDVPSANTIVINRA 895          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A523K7F5_9GAMM (Transcription-repair-coupling factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K7F5_9GAMM)

HSP 1 Score: 761 bits (1966), Expect = 5.880e-262
Identity = 391/646 (60.53%), Postives = 485/646 (75.08%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDE-VGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRR-RRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            VY+DV +G APAGIEYYLPLF+     L DYLP + + I DE V  + E F   +  RYEQ RHDVERP++ P  +F    +LL+  K Y  + +S +  DE  G   + T  P  + IDAR+A P  +    I    GR+LL+A+S GRRE++L+LFQQ   +P  +  W+EFL     +G+ VA L +GA++D PR+++++EGQLFGER  QRR R+R   D E++IRNLTEL  GAPV+HE+HGVGRY  L  L VG +  EFI IEYA+GD LYVPVSALD ISR++GVDP+HAPLH+LGSGQWEKARRKA +++ DVAAELLE+HA+RAAR G  F +D   + AF  +FPFEETP Q++AI  V+ DM   +PMDRLVCGD GFGKTEVAMRA+FIAV +  QVAILVPTTLLA+QHY++  DRFADWPVR+  LSRF   KE +  + GI DG VDIV+GTHKL+   I F RLGLL+IDEEHRFGVRQKEK KA+RA+ID+LTLTATPIPRTLNMAL+  RE SIIAT P++RLA+KTFVREW+++LL+EA+LREI RGGQVY +HN+VE IE+MA+ V  + PEA + +AHGQM E  LE VMLDFYH R NVL+CTTIIET IDVP+AN +IINRA
Sbjct:  253 VYRDVSQGFAPAGIEYYLPLFYKDTSTLFDYLPDNCITIFDEDVIDVSESFWQDIETRYEQTRHDVERPVLPPREMFLNLHDLLSRTKNYHQIHISHMEQDERAGTSNYDTTLPPSLTIDARSAQPLLIFKRFISGFAGRILLVAESAGRRETLLDLFQQHQIKPVQYADWSEFLHGKERLGLTVAPLEQGAQLDNPRIAIVSEGQLFGERVMQRRLRKRKQQDSESIIRNLTELTLGAPVIHEEHGVGRYQGLITLEVGDIPAEFIFIEYAEGDKLYVPVSALDLISRFTGVDPEHAPLHRLGSGQWEKARRKAAKRVYDVAAELLELHAQRAARSGFNFELDEDAYRAFVQSFPFEETPGQMDAISAVIDDMTQGKPMDRLVCGDAGFGKTEVAMRASFIAVQNSKQVAILVPTTLLAQQHYQNFIDRFADWPVRVELLSRFRTGKEQEEAIKGIEDGKVDIVIGTHKLIQGKIDFARLGLLIIDEEHRFGVRQKEKFKAIRAEIDVLTLTATPIPRTLNMALSDLREFSIIATPPAKRLAVKTFVREWNDALLKEALLREIKRGGQVYVLHNKVETIEKMARQVESLLPEASVRIAHGQMPEKTLEQVMLDFYHRRFNVLVCTTIIETGIDVPSANTIIINRA 898          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A251XAS7_9GAMM (Transcription-repair-coupling factor n=1 Tax=Thioflexithrix psekupsensis TaxID=1570016 RepID=A0A251XAS7_9GAMM)

HSP 1 Score: 761 bits (1964), Expect = 1.070e-261
Identity = 388/645 (60.16%), Postives = 490/645 (75.97%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRRRR-RATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            VYQDV +  APAGIEYYLPLFF++   L DYLP   L+   + V  + ++F     +RYEQLRHD+ERPL+ P+ LF    E+ A ++ +  + +     D      F T  P  + ++AR A P A L + +    GRVL+ A+++GRRESM+ELF+    RP   ++WA+FL   AA+ I VA L  G  + +P L ++ E QLFGER +QRRRR + T D + V+RNLTEL  GAPVVHE+HGVGRY+ L  LT+ G+T EF+ +EYA+ D LYVPVSAL  ISR++GVDP+HAPLH+LGSGQWEKA+RKA +K+ DVAAELL+IHA+RAAR+GHAF  D   +AAF   FPFEETPDQ  AI  V+ DM   + MDRL+CGDVGFGKTEVAMRAAFIAV+DG QVA+LVPTTLLA+QHY++ +DRFA+WPV+I QLSRF   K+ +  L+ IADG +DI++GTHKLL   I FKRLGL++IDEEHRFGV+QKE+ KALRA++DILTLTATPIPR+LNMALA  RELSIIAT PSRRLAIKTFV+EW    + EAI+RE+ RGGQVYF+HN++++IE+MAQTV+E+ PEAR+ +AHGQ+RE ELE VM DFYH R NVL+CTTIIET IDVP+AN +II+RA
Sbjct:  252 VYQDVSQKFAPAGIEYYLPLFFEETATLFDYLPPGGLICTVDNVTEIADQFWQEANQRYEQLRHDIERPLLAPSTLFLQTHEVFAAIRHHPHLDIRP---DHPSAHIFLTQPPPLLTVEARQADPLATLKQFLNNFQGRVLIAAETMGRRESMMELFRTHDIRPVVVENWADFLQHSAALCITVAPLERGLYLTDPLLVVICEAQLFGERVSQRRRRNKITRDTDTVVRNLTELSIGAPVVHEEHGVGRYLGLVTLTLNGITAEFLHLEYANQDKLYVPVSALHLISRFTGVDPEHAPLHRLGSGQWEKAKRKAAQKVTDVAAELLDIHAKRAARQGHAFRYDPKDYAAFVQRFPFEETPDQQEAILAVIRDMTSEKSMDRLICGDVGFGKTEVAMRAAFIAVSDGQQVAVLVPTTLLAQQHYQNFQDRFAEWPVKIEQLSRFRSKKQQETALSQIADGQIDIIIGTHKLLQDPIHFKRLGLVIIDEEHRFGVKQKERFKALRAEVDILTLTATPIPRSLNMALADLRELSIIATPPSRRLAIKTFVKEWHAPSISEAIMRELRRGGQVYFLHNDIDSIEKMAQTVSELVPEARVDIAHGQLRERELERVMRDFYHRRFNVLVCTTIIETGIDVPSANTIIIHRA 893          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A2N2AHD3_9GAMM (Transcription-repair-coupling factor n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N2AHD3_9GAMM)

HSP 1 Score: 759 bits (1961), Expect = 2.950e-261
Identity = 388/647 (59.97%), Postives = 481/647 (74.34%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGD-EVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQRRRR--RATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            +Y+DV  GLAP GIEYYLPLFF+    L DYLPA TLV+  E  E   + F     ER+EQLRH++ERPL+ P  +F    E+L  L AY   ++     +   G   FA   P  + +D R+  P A L   +    GRVL   +S GRRE++L+L      +PRA +SW EFL SD A+G+ VA L +G  + +P L+++ E QL+GE+  QRRRR  RAT D +AVIRNL EL+PGAPVVHE+HGVGRY+ ++ L  GG+  EF+ +EYA GD LYVPVS+L  ISRY+G  P+ APLHKLGSGQWEKA+RKA EK+RDVAAELL I+A+RAARKGHA+ +D AG+ AF A FPFE TPDQ  AI+ V+ DM+  QPMDRLVCGDVGFGKTEVAMRAAF+AV  G QVA+LVPTTLLA+QHYE+ +DRFADWPVRI  LSRF   KE    + G+  G VDI++GTHKLL ++I+ +RLGL++IDEEHRFGVRQKE+ KALRA++D+LTLTATPIPRTLNM+LA  R+LSIIATAP+RRLA+KTFV EW   L+ EA LREI RGGQVYF+HN+V+ IE+M Q +A + PEA +  AHGQMRE ELE VM DFYH R N+L+CTTIIET ID+P+AN ++INRA
Sbjct:  252 IYRDVSNGLAPPGIEYYLPLFFEHTHTLFDYLPAQTLVLSTEGAEDAADGFWGECKERHEQLRHNIERPLLPPENIFLRGDEVLGALAAYPRTQLQRFELEPRAGHHNFACDNPPSLTLDVRSEHPTAALRRFLGEFQGRVLFAVESAGRREALLDLLGGAEIKPRAVESWQEFLDSDIALGLLVAPLEQGLLLQDPPLAVIAEPQLYGEQVMQRRRRKVRATRDSDAVIRNLAELQPGAPVVHEEHGVGRYLGMQTLDTGGIEQEFLTLEYAGGDKLYVPVSSLHLISRYTGAAPESAPLHKLGSGQWEKAKRKASEKVRDVAAELLAIYAQRAARKGHAYKMDWAGYQAFAAGFPFETTPDQQAAIDAVINDMETPQPMDRLVCGDVGFGKTEVAMRAAFVAVMGGKQVAMLVPTTLLAQQHYENFRDRFADWPVRIESLSRFRTRKEQDQVIEGLQQGKVDIIIGTHKLLQENIKLERLGLVIIDEEHRFGVRQKERFKALRAEVDVLTLTATPIPRTLNMSLANIRDLSIIATAPARRLAVKTFVTEWQQPLIHEACLREIKRGGQVYFLHNDVDTIEKMEQELAALIPEATVRHAHGQMRERELERVMSDFYHQRFNILVCTTIIETGIDIPSANTIVINRA 898          
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Match: A0A7C1D0T7_9GAMM (Transcription-repair-coupling factor n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A7C1D0T7_9GAMM)

HSP 1 Score: 758 bits (1958), Expect = 8.860e-261
Identity = 390/647 (60.28%), Postives = 484/647 (74.81%), Query Frame = 1
Query:    1 VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGERFGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSGDEVGQ--MEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRRESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSLLTEGQLFGERAAQ-RRRRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYVRLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHKLGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFEAAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFIAVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKATLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKALRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWSNSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQMRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA 1932
            +Y++V  G APAGIEYY+PLFF+Q+  L DYLP D LVI  E VEA  ERF   +A+RYEQ RHDV+RPL+ P +LF APAEL AGL   + V + G   ++       FA+ +   + + ARA  P A L   I    GR+L +A+S GRRE ++E  +Q    PR  + W EF+  D    I VA L  G  + E  ++++ E  LFG+RA Q RRR+R T D +AV+RNLT+L  GAPVVHE+HGVGRY+ L+ L +GG   EF+ +EYA GD LYVPVS+L  ISRY+G  P+ APLHKLGS QW+KAR KA EKI DVAAELL+I+ARRAAR+GHAF  D   +AAF A+FPFEETPDQ  AIE VL DM   +PMDR+VCGDVGFGKTEVAMRAAF+A + G QVA+LVPTTLLA+QH ++ +DR ADWP+RI  LSRF   K+ K TLAGIA GTVDIV+GTHKLL  D++FK LGL ++DEEHRFGVR KEK+K LRA++DILTLTATPIPRTLNM+L+G R+LSIIAT P +R AIKTFV EW+++LL+EA+LRE+ RGGQVYF+HNEV+ IE+MAQ + ++ P+  + +AHGQMRE ELE VMLDFYH R N+LLCTTI+E+ IDVP AN +IINRA
Sbjct:  250 IYREVSNGSAPAGIEYYIPLFFEQMSTLFDYLPEDALVIALEDVEAAAERFVAGLADRYEQRRHDVQRPLLAPDQLFLAPAELAAGLDRQSRVFIQGFEIEDADATAQNFASLSLPNLLLQARAEDPAAALRSFIASRPGRLLFVAESAGRREHLIEALRQFELFPRTVEGWPEFIDGDLDYAITVAPLESGVRLPEAGINIIPESALFGQRAQQERRRKRPTRDADAVVRNLTDLNVGAPVVHEEHGVGRYIGLQKLEIGGSETEFLTLEYAGGDKLYVPVSSLHLISRYTGTAPEDAPLHKLGSNQWQKARCKAAEKIHDVAAELLDINARRAARRGHAFATDTDEYAAFAASFPFEETPDQQKAIEAVLEDMAAERPMDRVVCGDVGFGKTEVAMRAAFVAASGGKQVAVLVPTTLLAQQHLQNFRDRLADWPIRIEGLSRFRSQKQHKETLAGIAAGTVDIVIGTHKLLQGDVKFKDLGLNIVDEEHRFGVRDKEKLKNLRAEVDILTLTATPIPRTLNMSLSGLRDLSIIATPPVQRHAIKTFVSEWNDALLQEAVLREVRRGGQVYFLHNEVQTIEKMAQRIQQVVPDVSVRIAHGQMRERELEEVMLDFYHQRFNILLCTTIVESGIDVPTANTIIINRA 896          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DBQ9_9GAMM1.100e-28864.34Transcription-repair-coupling factor n=1 Tax=Gamma... [more]
A0A1Z9UIZ4_9GAMM8.040e-28864.81Transcription-repair-coupling factor n=2 Tax=Gamma... [more]
A0A1G0JBZ0_9GAMM9.770e-26960.22Transcription-repair-coupling factor n=1 Tax=Gamma... [more]
A0A661BW16_9GAMM8.890e-26761.61Transcription-repair-coupling factor n=2 Tax=Gamma... [more]
A0A369C9H2_9GAMM9.640e-26361.15Transcription-repair-coupling factor n=1 Tax=Thioa... [more]
A0A6N1DMC0_9GAMM5.370e-26260.06Transcription-repair-coupling factor n=1 Tax=Ectot... [more]
A0A523K7F5_9GAMM5.880e-26260.53Transcription-repair-coupling factor n=1 Tax=Gamma... [more]
A0A251XAS7_9GAMM1.070e-26160.16Transcription-repair-coupling factor n=1 Tax=Thiof... [more]
A0A2N2AHD3_9GAMM2.950e-26159.97Transcription-repair-coupling factor n=2 Tax=Gamma... [more]
A0A7C1D0T7_9GAMM8.860e-26160.28Transcription-repair-coupling factor n=1 Tax=Thioa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12802contigP-wetherbeei_contig12802:1..1932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog472759.Nhal_3142
Preferred namemfd
PFAMsCarD_CdnL_TRCF,DEAD,Helicase_C,TRCF
Model size1932
Max annot lvl135613|Chromatiales
KEGG koko:K03723
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.6e-259
EggNOG OGsCOG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,1RNCU@1236|Gammaproteobacteria,1WWJQ@135613|Chromatiales
DescriptionCouples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Cds size1932
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185961.9040847-CDS-P-wetherbeei_contig12802:0..19321683185961.9040847-CDS-P-wetherbeei_contig12802:0..1932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12802 1..1932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12802.1.1prot_P-wetherbeei_contig12802.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12802 1..1932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12802.1.1

>prot_P-wetherbeei_contig12802.1.1 ID=prot_P-wetherbeei_contig12802.1.1|Name=mRNA_P-wetherbeei_contig12802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=644bp
VYQDVGEGLAPAGIEYYLPLFFDQLDLLSDYLPADTLVIVDEAVEAMGER
FGVAVAERYEQLRHDVERPLVKPARLFAAPAELLAGLKAYACVKVSGLSG
DEVGQMEFATHTPVRVPIDARAAAPFALLDEHIKRCTGRVLLLADSLGRR
ESMLELFQQQPFRPRAFDSWAEFLSSDAAVGIAVAALHEGAEIDEPRLSL
LTEGQLFGERAAQRRRRRATTDQEAVIRNLTELRPGAPVVHEQHGVGRYV
RLEVLTVGGVTNEFIKIEYADGDNLYVPVSALDRISRYSGVDPDHAPLHK
LGSGQWEKARRKAHEKIRDVAAELLEIHARRAARKGHAFTVDRAGFAAFE
AAFPFEETPDQLNAIEGVLADMQGAQPMDRLVCGDVGFGKTEVAMRAAFI
AVNDGHQVAILVPTTLLARQHYESLKDRFADWPVRIGQLSRFSDSKETKA
TLAGIADGTVDIVVGTHKLLGKDIRFKRLGLLVIDEEHRFGVRQKEKIKA
LRADIDILTLTATPIPRTLNMALAGTRELSIIATAPSRRLAIKTFVREWS
NSLLREAILREIGRGGQVYFVHNEVENIEEMAQTVAEIAPEARIAVAHGQ
MRESELEHVMLDFYHGRCNVLLCTTIIETAIDVPNANNMIINRA
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mRNA from alignment at P-wetherbeei_contig12802:1..1932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12802.1.1 ID=mRNA_P-wetherbeei_contig12802.1.1|Name=mRNA_P-wetherbeei_contig12802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1932bp|location=Sequence derived from alignment at P-wetherbeei_contig12802:1..1932- (Phaeothamnion wetherbeei SAG_119_79)
GTCTATCAGGACGTCGGCGAGGGACTCGCACCGGCCGGCATCGAATACTA TCTGCCGCTGTTTTTCGATCAGCTCGATCTGCTGAGCGATTATCTGCCGG CTGACACGCTGGTGATCGTCGACGAAGCGGTGGAAGCGATGGGCGAGCGC TTCGGTGTAGCGGTTGCCGAACGCTATGAACAATTACGTCACGATGTCGA GCGTCCGCTGGTCAAACCAGCGCGCTTGTTCGCCGCGCCGGCCGAACTGC TGGCGGGGCTGAAGGCCTATGCCTGCGTCAAGGTCAGTGGCTTGTCGGGT GACGAGGTCGGGCAAATGGAATTCGCCACCCATACGCCGGTGCGTGTACC CATAGATGCGCGTGCCGCTGCACCCTTTGCCTTGCTCGACGAGCACATCA AGCGCTGCACCGGGCGTGTGTTATTGCTGGCCGATTCCCTGGGACGGCGC GAGAGCATGCTGGAACTGTTCCAGCAGCAGCCGTTCCGGCCGCGCGCCTT TGATTCCTGGGCGGAGTTTCTCAGCTCCGATGCGGCGGTCGGCATTGCGG TCGCGGCTCTGCACGAAGGCGCCGAAATCGACGAGCCGCGCTTATCCCTG TTGACCGAAGGTCAGTTGTTTGGCGAACGCGCGGCCCAGCGCCGCCGCCG GCGCGCGACCACGGACCAGGAAGCGGTGATCCGCAATCTCACCGAGCTGC GTCCGGGCGCGCCCGTGGTGCACGAGCAACACGGTGTCGGTCGTTATGTG CGGCTGGAAGTGCTGACCGTTGGCGGCGTGACCAATGAGTTCATCAAGAT TGAATACGCCGATGGCGATAACCTCTATGTGCCGGTCAGCGCACTTGATC GCATCAGTCGTTACTCCGGCGTCGACCCCGATCACGCACCGCTGCACAAG CTCGGCAGCGGGCAGTGGGAGAAGGCGCGCCGCAAGGCCCACGAGAAGAT TCGCGACGTCGCCGCCGAACTGCTGGAGATTCATGCGCGGCGCGCGGCGC GCAAGGGTCATGCGTTCACGGTGGATCGCGCCGGCTTCGCGGCCTTTGAA GCAGCATTTCCGTTCGAGGAAACGCCCGATCAGTTGAATGCCATCGAGGG TGTGCTGGCCGACATGCAAGGCGCACAACCGATGGATCGCCTGGTGTGTG GCGACGTCGGCTTCGGCAAGACTGAAGTCGCCATGCGCGCGGCCTTCATC GCCGTCAACGATGGCCATCAGGTTGCGATCCTGGTGCCCACCACCCTGCT TGCGCGTCAGCACTATGAATCACTGAAAGACAGATTCGCCGACTGGCCGG TGCGCATCGGGCAGTTGTCGCGCTTCAGTGACAGCAAGGAGACCAAGGCG ACTTTGGCCGGCATTGCCGACGGCACGGTCGACATCGTGGTCGGCACCCA TAAGCTGCTCGGCAAGGACATCCGCTTCAAGCGCCTCGGTCTGCTGGTCA TTGACGAAGAGCACCGCTTTGGCGTGCGTCAGAAAGAGAAGATCAAAGCG CTGCGTGCCGACATCGACATCCTGACCCTGACCGCGACGCCGATACCGCG CACGCTCAACATGGCGTTGGCCGGCACCCGCGAGCTGTCTATCATTGCCA CCGCGCCATCGCGACGACTCGCTATCAAGACCTTTGTGCGCGAATGGTCG AACTCGCTGCTGCGTGAAGCCATCCTGCGAGAAATCGGCCGTGGAGGTCA GGTGTACTTCGTGCACAACGAAGTGGAGAACATTGAGGAGATGGCGCAGA CCGTGGCCGAGATCGCGCCCGAGGCGCGTATCGCGGTCGCCCACGGCCAG ATGCGTGAGAGCGAACTCGAACATGTGATGCTCGATTTCTATCATGGCCG CTGCAACGTACTGTTGTGCACGACCATCATCGAGACTGCTATCGACGTGC CGAACGCCAATAACATGATCATCAACCGTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12802:1..1932-

>mRNA_P-wetherbeei_contig12802.1.1 ID=mRNA_P-wetherbeei_contig12802.1.1|Name=mRNA_P-wetherbeei_contig12802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1932bp|location=Sequence derived from alignment at P-wetherbeei_contig12802:1..1932- (Phaeothamnion wetherbeei SAG_119_79)
GTCTATCAGGACGTCGGCGAGGGACTCGCACCGGCCGGCATCGAATACTA
TCTGCCGCTGTTTTTCGATCAGCTCGATCTGCTGAGCGATTATCTGCCGG
CTGACACGCTGGTGATCGTCGACGAAGCGGTGGAAGCGATGGGCGAGCGC
TTCGGTGTAGCGGTTGCCGAACGCTATGAACAATTACGTCACGATGTCGA
GCGTCCGCTGGTCAAACCAGCGCGCTTGTTCGCCGCGCCGGCCGAACTGC
TGGCGGGGCTGAAGGCCTATGCCTGCGTCAAGGTCAGTGGCTTGTCGGGT
GACGAGGTCGGGCAAATGGAATTCGCCACCCATACGCCGGTGCGTGTACC
CATAGATGCGCGTGCCGCTGCACCCTTTGCCTTGCTCGACGAGCACATCA
AGCGCTGCACCGGGCGTGTGTTATTGCTGGCCGATTCCCTGGGACGGCGC
GAGAGCATGCTGGAACTGTTCCAGCAGCAGCCGTTCCGGCCGCGCGCCTT
TGATTCCTGGGCGGAGTTTCTCAGCTCCGATGCGGCGGTCGGCATTGCGG
TCGCGGCTCTGCACGAAGGCGCCGAAATCGACGAGCCGCGCTTATCCCTG
TTGACCGAAGGTCAGTTGTTTGGCGAACGCGCGGCCCAGCGCCGCCGCCG
GCGCGCGACCACGGACCAGGAAGCGGTGATCCGCAATCTCACCGAGCTGC
GTCCGGGCGCGCCCGTGGTGCACGAGCAACACGGTGTCGGTCGTTATGTG
CGGCTGGAAGTGCTGACCGTTGGCGGCGTGACCAATGAGTTCATCAAGAT
TGAATACGCCGATGGCGATAACCTCTATGTGCCGGTCAGCGCACTTGATC
GCATCAGTCGTTACTCCGGCGTCGACCCCGATCACGCACCGCTGCACAAG
CTCGGCAGCGGGCAGTGGGAGAAGGCGCGCCGCAAGGCCCACGAGAAGAT
TCGCGACGTCGCCGCCGAACTGCTGGAGATTCATGCGCGGCGCGCGGCGC
GCAAGGGTCATGCGTTCACGGTGGATCGCGCCGGCTTCGCGGCCTTTGAA
GCAGCATTTCCGTTCGAGGAAACGCCCGATCAGTTGAATGCCATCGAGGG
TGTGCTGGCCGACATGCAAGGCGCACAACCGATGGATCGCCTGGTGTGTG
GCGACGTCGGCTTCGGCAAGACTGAAGTCGCCATGCGCGCGGCCTTCATC
GCCGTCAACGATGGCCATCAGGTTGCGATCCTGGTGCCCACCACCCTGCT
TGCGCGTCAGCACTATGAATCACTGAAAGACAGATTCGCCGACTGGCCGG
TGCGCATCGGGCAGTTGTCGCGCTTCAGTGACAGCAAGGAGACCAAGGCG
ACTTTGGCCGGCATTGCCGACGGCACGGTCGACATCGTGGTCGGCACCCA
TAAGCTGCTCGGCAAGGACATCCGCTTCAAGCGCCTCGGTCTGCTGGTCA
TTGACGAAGAGCACCGCTTTGGCGTGCGTCAGAAAGAGAAGATCAAAGCG
CTGCGTGCCGACATCGACATCCTGACCCTGACCGCGACGCCGATACCGCG
CACGCTCAACATGGCGTTGGCCGGCACCCGCGAGCTGTCTATCATTGCCA
CCGCGCCATCGCGACGACTCGCTATCAAGACCTTTGTGCGCGAATGGTCG
AACTCGCTGCTGCGTGAAGCCATCCTGCGAGAAATCGGCCGTGGAGGTCA
GGTGTACTTCGTGCACAACGAAGTGGAGAACATTGAGGAGATGGCGCAGA
CCGTGGCCGAGATCGCGCCCGAGGCGCGTATCGCGGTCGCCCACGGCCAG
ATGCGTGAGAGCGAACTCGAACATGTGATGCTCGATTTCTATCATGGCCG
CTGCAACGTACTGTTGTGCACGACCATCATCGAGACTGCTATCGACGTGC
CGAACGCCAATAACATGATCATCAACCGTGCC
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