mRNA_P-wetherbeei_contig12737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12737.1.1
Unique NamemRNA_P-wetherbeei_contig12737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12737contigP-wetherbeei_contig12737:936..1309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size374
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.3733044-CDS-P-wetherbeei_contig12737:935..12381683185959.3733044-CDS-P-wetherbeei_contig12737:935..1238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12737 936..1238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.3808029-UTR-P-wetherbeei_contig12737:1238..13091683185959.3808029-UTR-P-wetherbeei_contig12737:1238..1309Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12737 1239..1309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12737.1.1prot_P-wetherbeei_contig12737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12737 936..1238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12737.1.1

>prot_P-wetherbeei_contig12737.1.1 ID=prot_P-wetherbeei_contig12737.1.1|Name=mRNA_P-wetherbeei_contig12737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MLALPRGWAWRPPHGETHGVKYMSDTRRAAPSAMFERGEKGQGVHDGPAQ
MLAQLIQDHPRRYNLPGLSEVAAEVSGISQKAKRRPEVALRRVDGGRGPV
*
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mRNA from alignment at P-wetherbeei_contig12737:936..1309-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12737.1.1 ID=mRNA_P-wetherbeei_contig12737.1.1|Name=mRNA_P-wetherbeei_contig12737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=374bp|location=Sequence derived from alignment at P-wetherbeei_contig12737:936..1309- (Phaeothamnion wetherbeei SAG_119_79)
TACACGCGGGAGACACATAATATTGCGGAATTAGGTTGGGAAGTGGGGAT
CAAAAAGGAACACACACTCACATGCTGGCATTGCCGCGAGGCTGGGCGTG
GCGGCCACCACATGGCGAGACGCATGGCGTGAAGTACATGAGCGACACAC
GGAGGGCCGCCCCGTCCGCAATGTTTGAGCGGGGCGAAAAAGGACAAGGT
GTTCATGATGGCCCCGCCCAGATGCTGGCCCAGCTCATTCAGGATCATCC
GCGGCGGTACAATCTCCCCGGCCTGTCTGAGGTGGCAGCTGAAGTATCTG
GCATAAGTCAGAAGGCAAAGAGGAGGCCAGAAGTGGCCCTGCGGAGAGTA
GACGGTGGAAGGGGGCCAGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12737:936..1309-

>mRNA_P-wetherbeei_contig12737.1.1 ID=mRNA_P-wetherbeei_contig12737.1.1|Name=mRNA_P-wetherbeei_contig12737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig12737:936..1309- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCATTGCCGCGAGGCTGGGCGTGGCGGCCACCACATGGCGAGAC
GCATGGCGTGAAGTACATGAGCGACACACGGAGGGCCGCCCCGTCCGCAA
TGTTTGAGCGGGGCGAAAAAGGACAAGGTGTTCATGATGGCCCCGCCCAG
ATGCTGGCCCAGCTCATTCAGGATCATCCGCGGCGGTACAATCTCCCCGG
CCTGTCTGAGGTGGCAGCTGAAGTATCTGGCATAAGTCAGAAGGCAAAGA
GGAGGCCAGAAGTGGCCCTGCGGAGAGTAGACGGTGGAAGGGGGCCAGTT
TAG
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