mRNA_P-wetherbeei_contig12735.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12735.1.1
Unique NamemRNA_P-wetherbeei_contig12735.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12735.1.1 vs. uniprot
Match: A0A354GM70_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GM70_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.430e-5
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   22 DAKALEALAAYQPQAKSDDLGRVVELKLDGPQVDDLALDHVAGLSELKVLSL 177
            DA  L  LA Y    K D+ GRV+E+ L+G QVDD AL H+  LSEL+ LSL
Sbjct:   19 DAICLAGLAPYHDTHKIDENGRVIEVTLEGRQVDDAALIHLQNLSELRRLSL 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12735.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A354GM70_9BACT1.430e-553.85Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12735contigP-wetherbeei_contig12735:1..237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog595460.RRSWK_06355
Model size237
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000809
EggNOG OGsCOG4886@1|root,COG4886@2|Bacteria
Descriptionregulation of response to stimulus
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.2796118-CDS-P-wetherbeei_contig12735:0..2371683185959.2796118-CDS-P-wetherbeei_contig12735:0..237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12735 1..237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12735.1.1prot_P-wetherbeei_contig12735.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12735 1..237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12735.1.1

>prot_P-wetherbeei_contig12735.1.1 ID=prot_P-wetherbeei_contig12735.1.1|Name=mRNA_P-wetherbeei_contig12735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
KAPAPSPDAKALEALAAYQPQAKSDDLGRVVELKLDGPQVDDLALDHVAG
LSELKVLSLYGSSVTDDGLEKLKGASKLE
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mRNA from alignment at P-wetherbeei_contig12735:1..237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12735.1.1 ID=mRNA_P-wetherbeei_contig12735.1.1|Name=mRNA_P-wetherbeei_contig12735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig12735:1..237- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGCCGGCCCCGTCCCCCGATGCGAAAGCGCTGGAGGCGCTGGCGGC
CTATCAGCCGCAAGCGAAATCGGACGACCTCGGGCGCGTGGTGGAACTGA
AGCTGGACGGGCCACAGGTCGACGACCTCGCCCTCGACCACGTGGCCGGC
CTGTCCGAACTCAAGGTGCTGAGCCTCTACGGCTCGTCGGTTACCGACGA
CGGGCTGGAGAAGCTGAAAGGCGCCTCCAAACTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12735:1..237-

>mRNA_P-wetherbeei_contig12735.1.1 ID=mRNA_P-wetherbeei_contig12735.1.1|Name=mRNA_P-wetherbeei_contig12735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig12735:1..237- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGCCGGCCCCGTCCCCCGATGCGAAAGCGCTGGAGGCGCTGGCGGC
CTATCAGCCGCAAGCGAAATCGGACGACCTCGGGCGCGTGGTGGAACTGA
AGCTGGACGGGCCACAGGTCGACGACCTCGCCCTCGACCACGTGGCCGGC
CTGTCCGAACTCAAGGTGCTGAGCCTCTACGGCTCGTCGGTTACCGACGA
CGGGCTGGAGAAGCTGAAAGGCGCCTCCAAACTGGAG
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