mRNA_P-wetherbeei_contig1273.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1273.2.1
Unique NamemRNA_P-wetherbeei_contig1273.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1273.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1273contigP-wetherbeei_contig1273:6871..7394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categorysignal anchor
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.8682992-CDS-P-wetherbeei_contig1273:6870..73831683185958.8682992-CDS-P-wetherbeei_contig1273:6870..7383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1273 6871..7383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.881533-UTR-P-wetherbeei_contig1273:7383..73941683185958.881533-UTR-P-wetherbeei_contig1273:7383..7394Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1273 7384..7394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1273.2.1prot_P-wetherbeei_contig1273.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1273 6871..7383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1273.2.1

>prot_P-wetherbeei_contig1273.2.1 ID=prot_P-wetherbeei_contig1273.2.1|Name=mRNA_P-wetherbeei_contig1273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MDEEALYRQHVAVDAYGDLGGGVTARYGSFGPAGPGFWADSPLPLVGQRL
AWGKRGARRRPTALPPRLAPQVPCFSVYALISLLLSLLPVGKVSAITGSL
KCKDNGCFLFLFTRNQRVHASIATVLSQISFLTLNSFLHASCQGRVSAYC
VAEELDLVRLKQYLSDKADRK
back to top

mRNA from alignment at P-wetherbeei_contig1273:6871..7394-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1273.2.1 ID=mRNA_P-wetherbeei_contig1273.2.1|Name=mRNA_P-wetherbeei_contig1273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=524bp|location=Sequence derived from alignment at P-wetherbeei_contig1273:6871..7394- (Phaeothamnion wetherbeei SAG_119_79)
ATCAGCGGCTGATGGACGAGGAAGCGTTATATCGGCAGCATGTCGCTGTC
GACGCGTACGGTGACCTGGGTGGCGGGGTTACGGCCCGCTACGGCAGCTT
CGGCCCAGCGGGGCCGGGATTTTGGGCAGATTCGCCTCTTCCTCTCGTGG
GACAGCGGCTTGCGTGGGGCAAGCGCGGCGCACGGCGACGGCCAACGGCC
TTGCCTCCGCGCTTAGCACCACAGGTTCCTTGCTTTTCGGTTTACGCACT
CATTTCTCTGTTGCTTTCGCTCCTTCCCGTTGGCAAAGTTTCTGCGATCA
CCGGGTCTCTCAAATGTAAGGATAATGGGTGTTTTCTATTCTTGTTTACA
CGAAACCAAAGGGTCCATGCCTCAATAGCAACTGTACTATCCCAGATTTC
GTTTCTTACTCTAAATTCGTTCTTGCATGCCTCCTGCCAGGGCCGCGTGA
GTGCGTACTGTGTGGCAGAAGAGCTGGACCTGGTCCGGTTGAAGCAGTAC
CTCAGCGACAAGGCCGACCGAAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1273:6871..7394-

>mRNA_P-wetherbeei_contig1273.2.1 ID=mRNA_P-wetherbeei_contig1273.2.1|Name=mRNA_P-wetherbeei_contig1273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig1273:6871..7394- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGGAAGCGTTATATCGGCAGCATGTCGCTGTCGACGCGTACGG
TGACCTGGGTGGCGGGGTTACGGCCCGCTACGGCAGCTTCGGCCCAGCGG
GGCCGGGATTTTGGGCAGATTCGCCTCTTCCTCTCGTGGGACAGCGGCTT
GCGTGGGGCAAGCGCGGCGCACGGCGACGGCCAACGGCCTTGCCTCCGCG
CTTAGCACCACAGGTTCCTTGCTTTTCGGTTTACGCACTCATTTCTCTGT
TGCTTTCGCTCCTTCCCGTTGGCAAAGTTTCTGCGATCACCGGGTCTCTC
AAATGTAAGGATAATGGGTGTTTTCTATTCTTGTTTACACGAAACCAAAG
GGTCCATGCCTCAATAGCAACTGTACTATCCCAGATTTCGTTTCTTACTC
TAAATTCGTTCTTGCATGCCTCCTGCCAGGGCCGCGTGAGTGCGTACTGT
GTGGCAGAAGAGCTGGACCTGGTCCGGTTGAAGCAGTACCTCAGCGACAA
GGCCGACCGAAAG
back to top