mRNA_P-wetherbeei_contig12725.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12725.2.1
Unique NamemRNA_P-wetherbeei_contig12725.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A140GVV3_9HYPH (Extracytoplasmic binding receptor n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVV3_9HYPH)

HSP 1 Score: 372 bits (956), Expect = 5.340e-127
Identity = 189/269 (70.26%), Postives = 220/269 (81.78%), Query Frame = 1
Query:   13 MSKFLPVIAAAGLLLAAPHAQAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLVATL 816
            M+++L  +A   +L  AP AQAQD   YPNKPIKV+VTVPAGGGVDTVTR+VTE+MR  +GQP ++ENRGGAGGN+AA+YV+   PDGY LMA+QPSPITTN VLYK +  DP++F  +G+MS  PNVLLV+ DFPAKTA+EF+ Y KANP KLNYASQGPGTTSHLTAELF  + G  L HVPYKGT PALND+VAGHVD IFMQLEAA+KLHEG KARILAVTT KR   LPDIPTM E G+   +SDTWNAL+APPKTPAP++A L
Sbjct:    1 MNRYLTSLAMGVVLFVAP-AQAQD--DYPNKPIKVVVTVPAGGGVDTVTRLVTERMRTIVGQPFVVENRGGAGGNIAADYVYQQEPDGYTLMATQPSPITTNVVLYKSLTFDPTQFSPIGLMSSAPNVLLVRGDFPAKTAKEFLDYVKANPSKLNYASQGPGTTSHLTAELFNKLTGAHLQHVPYKGTGPALNDIVAGHVDLIFMQLEAALKLHEGGKARILAVTTEKRIASLPDIPTMIELGLPDFVSDTWNALAAPPKTPAPIIAKL 266          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A537SN54_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SN54_9PROT)

HSP 1 Score: 351 bits (900), Expect = 6.840e-118
Identity = 179/272 (65.81%), Postives = 212/272 (77.94%), Query Frame = 1
Query:    1 QDGPMSKFLPVIAAAGLLLAAPHA--QAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLV 807
            +D  MS+ L  +AAA  LLA   A  Q  DAA YPN+P+K++V+VPAGGGVDTVTRI    ++Q+LGQP +IENRGG GGN+ AE V+ A PDGY L+ASQP+PIT+N  LYK++  DP   E V +MS IPNVLLV+ DFPAKTAQEF+AYAKANPGK+ +ASQGPGTTSHLTAEL   + GTK++HVPY+GT PALNDLVAGHVDFIFM+L +A KLHEG KARILA  T  R   LPDIPT  E GV   +SDTWNA+SAPPKTPA +V
Sbjct:   33 KDAWMSRHLRRVAAAAALLAISPAFGQQDDAADYPNRPVKIIVSVPAGGGVDTVTRIFAAGLQQRLGQPFVIENRGGGGGNIGAETVYTAEPDGYTLLASQPAPITSNIALYKKLNFDPVALESVAVMSKIPNVLLVRQDFPAKTAQEFIAYAKANPGKVTFASQGPGTTSHLTAELLMKLTGTKMLHVPYRGTGPALNDLVAGHVDFIFMELASAYKLHEGGKARILAAATDHRLDMLPDIPTFNEIGVPDFVSDTWNAISAPPKTPAAIV 304          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A537PBP0_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PBP0_9PROT)

HSP 1 Score: 344 bits (883), Expect = 3.980e-115
Identity = 171/272 (62.87%), Postives = 214/272 (78.68%), Query Frame = 1
Query:    1 QDGPMSKF--LPVIAAAGLLLAAPHAQAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLV 807
            +D  MS++  L ++AAA L ++   AQ  +AA YPN+P+K++V+VPAGGGVDT  RI    ++Q+LGQP +IENRGG GGN+ AE V+ A PDGY L+ASQP+PIT+N  LYK++  DP+  E V IM+  PNVLLV+ DFPAKT QEF+AYAKANPGK+ YASQGPGTTSHLTAELF  + GTK++HVPY+GT PALNDLVAGHVDFIFM+L +A KLHE +K+RILAV T +R   LP +PT+ E GV   ISDTWNA+SAPPKT AP++
Sbjct:   46 KDSVMSRYSALLMLAAAFLAMSPALAQQDEAADYPNRPVKIVVSVPAGGGVDTAARIFAASLQQRLGQPFVIENRGGGGGNIGAETVYAADPDGYTLLASQPAPITSNIALYKKLNFDPAALESVAIMTKFPNVLLVRQDFPAKTVQEFIAYAKANPGKITYASQGPGTTSHLTAELFMKLTGTKMLHVPYRGTGPALNDLVAGHVDFIFMELASAYKLHEAQKSRILAVATDRRLDILPHVPTLIEVGVPGFISDTWNAISAPPKTAAPII 317          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A6N7GUT3_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUT3_9HYPH)

HSP 1 Score: 342 bits (876), Expect = 1.180e-114
Identity = 172/270 (63.70%), Postives = 213/270 (78.89%), Query Frame = 1
Query:   13 MSKFLPVIAAAGLLLAAPHAQAQD-AASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGV-KLISDTWNALSAPPKTPAPLVATL 816
            M K   ++AA G LLA   A AQD AA +PN+PIK++V  PAGGG+DTVTRIV + + +KLGQP++IENRGGAGGN+ AE V+ + PDGY L+AS P+P+TTN  +YK++  DP+K E VG++   PN LLVKNDFPAKT QEF+AY KANPGK+NYASQG GTTSHLTAEL+  + G+K+VHVPY+GTAPALND+VAGHVD IFMQL +A+KLHE K+ARILAVT  KR   L D PTM EAGV   +S+TWNA++APP TP  ++A L
Sbjct:    5 MLKQFALLAAVGSLLAFSPAVAQDPAADFPNRPIKIIVANPAGGGIDTVTRIVGDSLTRKLGQPVVIENRGGAGGNIGAEAVYTSAPDGYTLLASVPAPLTTNTFMYKKLPFDPAKLEPVGVLGTFPNTLLVKNDFPAKTVQEFIAYVKANPGKVNYASQGIGTTSHLTAELYNALTGSKMVHVPYRGTAPALNDIVAGHVDLIFMQLSSALKLHEAKRARILAVTADKRIDVLKDTPTMIEAGVPNFVSNTWNAVTAPPGTPPAVIAKL 274          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A6L5FLL6_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLL6_9HYPH)

HSP 1 Score: 341 bits (875), Expect = 1.190e-114
Identity = 170/266 (63.91%), Postives = 208/266 (78.20%), Query Frame = 1
Query:   13 MSKFLPVIAAAGLLLAAPHAQAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLV 807
            M ++  ++A AG LLA    QAQ   ++P+KP++V+V+VPAGGGVDTVTR++TE++ ++ GQ +++ENRGGAGGN+  E VF + PDGY L+ASQP+PIT N VLY ++  DP KFE V IMS +PNVLLV+ DFPAKTA+EFVAYAKANPGKLNYASQG GTTSHLTAELF    G K  HVPYKGTAPALNDL+A HVDFIFM+L  A +LH+G KARILA  T KR   L DIPT+EE GV  ++S TWN +SAPPKTP  +V
Sbjct:    1 MRRYWALLACAGTLLAVAPLQAQQGGAFPSKPVRVIVSVPAGGGVDTVTRVITEQLSKRWGQTVVVENRGGAGGNIGGEAVFGSEPDGYTLLASQPAPITINKVLYTKMPYDPEKFETVAIMSELPNVLLVRPDFPAKTAKEFVAYAKANPGKLNYASQGIGTTSHLTAELFSRRTGLKFTHVPYKGTAPALNDLIASHVDFIFMELAMAKRLHDGNKARILAAATPKRISALSDIPTLEETGVSGVLSSTWNGISAPPKTPKTIV 266          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A6N7GNQ9_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GNQ9_9HYPH)

HSP 1 Score: 330 bits (847), Expect = 2.590e-110
Identity = 169/269 (62.83%), Postives = 211/269 (78.44%), Query Frame = 1
Query:   16 SKFLPVIAAAGLLLAAPHAQAQD-AASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGV-KLISDTWNALSAPPKTPAPLVATL 816
            ++ L ++A AG LLA   A+AQ  AA YPN+ ++V+V  PAGGG+DTVTRIVTE + +KLG P +IENRGGAGGN+ AE V+ +PPDGY L+A+ P+ +TTN  +Y+++  D +KFE V ++   PN LLVKNDFPAKT QEF+AY KANPGK+N+ASQG GTTSHLTAEL+  +AG K+VHVPY+GTAPALND+VAGHVD IFMQL +A+KLHE K+ARILAVTT KR   L D  TM EAGV   +SDTW+AL+APP TP  +VA L
Sbjct:    7 ARGLALLAVAGSLLAFLPARAQGPAADYPNRVVRVIVNNPAGGGLDTVTRIVTEALTRKLGHPFVIENRGGAGGNIGAEAVYTSPPDGYTLLAAVPAALTTNTFMYRKLNFDAAKFEPVAVLGTFPNTLLVKNDFPAKTVQEFIAYVKANPGKVNFASQGIGTTSHLTAELYNSLAGAKMVHVPYRGTAPALNDIVAGHVDLIFMQLSSALKLHEAKRARILAVTTDKRLGVLKDTLTMIEAGVPNFVSDTWSALAAPPGTPPAIVAKL 275          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A345ZW52_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZW52_9HYPH)

HSP 1 Score: 328 bits (841), Expect = 3.140e-109
Identity = 160/252 (63.49%), Postives = 205/252 (81.35%), Query Frame = 1
Query:   70 AQAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLVATLTA 822
            A A DAA+YP++P+K++V VPAGGGVDTVTRIV E ++ KLGQP+++ENR GAGGN+ A++VF++ PDGY L+A+QP+ IT N +LY+ ++ DPSKFE V IM+ IPNVLLV+ +F AKT QE +A AKANPGK+ YASQG GTTSHLTA L E+  G KLVHVPYKGT+PALND+++ HVD IFM+L +A+KLH+  KARILAV T+ R P+LPD+PT++EAGVK   S TWNA++APP TP P+V  L A
Sbjct:   38 AHADDAATYPSRPVKIVVDVPAGGGVDTVTRIVAEGLQNKLGQPVVVENRAGAGGNIGADFVFHSDPDGYTLLATQPAAITINPLLYRNLSFDPSKFEPVAIMTEIPNVLLVRPNFAAKTVQELIAQAKANPGKITYASQGIGTTSHLTAALLEEKVGLKLVHVPYKGTSPALNDIISDHVDMIFMELASALKLHQAGKARILAVATTHRVPNLPDVPTLDEAGVKGFESGTWNAIAAPPGTPKPIVDKLNA 289          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A537VJ50_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VJ50_9PROT)

HSP 1 Score: 323 bits (829), Expect = 1.350e-107
Identity = 168/268 (62.69%), Postives = 202/268 (75.37%), Query Frame = 1
Query:   13 MSKFLPVIAAAGLLLAAPHAQAQD--AASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLV 807
            MS++  ++AAA  LLA   A  Q   AA YPN+P+K++V+VPAGGGVDTVTRI    ++Q LGQP +IENRGGAGGN+ AE V+ A PDGY L+ASQP+PIT+N  LYK                  PNVLLV+ DFPAKTAQEF+AYAKANPGK+ +ASQGPGT+SHLTAELF  + GTK++HVPY+GT PALNDLVAGHVDFIFM+L +A KLH G KARILAV T  R   +PD+PT+ E GV   +SDTWNA+SAPPKTPA +V
Sbjct:   22 MSRYPVLVAAAAALLAMSPALGQQDPAADYPNRPVKIIVSVPAGGGVDTVTRIFAAGLQQHLGQPFVIENRGGAGGNIGAEAVYTAEPDGYTLLASQPAPITSNVALYK------------------PNVLLVRQDFPAKTAQEFIAYAKANPGKITFASQGPGTSSHLTAELFMKLTGTKMLHVPYRGTGPALNDLVAGHVDFIFMELASAYKLHAGGKARILAVATDHRIDVVPDVPTLIELGVPGFLSDTWNAISAPPKTPAAIV 271          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A537MWG9_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MWG9_9PROT)

HSP 1 Score: 323 bits (828), Expect = 1.730e-107
Identity = 168/271 (61.99%), Postives = 203/271 (74.91%), Query Frame = 1
Query:   13 MSKFLPVIAAAGLLLAAPHAQAQD--AASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLVATL 816
            MS++  +IA A LL+A   A AQ   AA YP + +K++V+  AGGGVDTVTRI    +  KLGQP +IENRGGAGGNL AE V+ A PDGY L++SQPSPIT+N VLYK++  DP   E V +MS I NVLLV+ DFPA+TAQEF+AYAKANPGK+ YASQGPGT+SHLTAELF  + GT+ +HVPY+GT PALNDLVAGHVD  F +L  A KLHEG + RILAV +  R   LPDIPT+ E G+   +SDTWNA+SAPPKT   +VA L
Sbjct:    1 MSRYPALIAFAALLIAISPALAQQDAAADYPQRSVKIIVSTSAGGGVDTVTRIFAAPLAHKLGQPFVIENRGGAGGNLGAEAVYVAEPDGYTLLSSQPSPITSNVVLYKKLNFDPVALEPVAVMSKIANVLLVRQDFPARTAQEFIAYAKANPGKVTYASQGPGTSSHLTAELFNQLTGTRSLHVPYRGTGPALNDLVAGHVDIFFTELATAYKLHEGGRCRILAVASEHRLDALPDIPTLIELGISGFLSDTWNAISAPPKTAPAIVAKL 271          
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Match: A0A7V8NUH7_9BACT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Candidatus Acidoferrum panamensis TaxID=2741543 RepID=A0A7V8NUH7_9BACT)

HSP 1 Score: 315 bits (806), Expect = 3.630e-104
Identity = 158/264 (59.85%), Postives = 200/264 (75.76%), Query Frame = 1
Query:   31 VIAAAGLLLAAPH-AQAQDAASYPNKPIKVMVTVPAGGGVDTVTRIVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPITTNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKANPGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHVDFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVK-LISDTWNALSAPPKTPAPLVATL 816
            V+ AA   LA+P  AQ   AA YPN P++++V+  AGGGVDTVTRI+   +++KLGQP +IE+RGG GGN+AAE V+ A PDGY L+ASQPSPIT+N  LYK++  DP+  E V ++S IPN+LLV+ DFPAKT  EF+ YAKA+PG + +ASQGPGTTSHL+ E F  + G ++VHVPY+GT PALNDL+ G VD +  +L  A KLH G KARILAV T +R  DLPDIPT+ EAGV   +SDTWNA+SAPPKTPA ++A L
Sbjct:    7 VLLAALCALASPALAQPDPAADYPNHPVRIIVSTSAGGGVDTVTRIIGAALQEKLGQPFVIEDRGGGGGNIAAEAVYTADPDGYTLLASQPSPITSNIALYKKLNFDPAALESVAVLSKIPNLLLVRQDFPAKTVAEFIVYAKAHPGGVTFASQGPGTTSHLSGEQFSQLLGARMVHVPYRGTGPALNDLIGGQVDCMITELATAYKLHTGGKARILAVATERRLDDLPDIPTVIEAGVPGFLSDTWNAISAPPKTPAAIIAKL 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12725.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A140GVV3_9HYPH5.340e-12770.26Extracytoplasmic binding receptor n=1 Tax=Rhodopla... [more]
A0A537SN54_9PROT6.840e-11865.81Tripartite tricarboxylate transporter substrate bi... [more]
A0A537PBP0_9PROT3.980e-11562.87Tripartite tricarboxylate transporter substrate bi... [more]
A0A6N7GUT3_9HYPH1.180e-11463.70Tripartite tricarboxylate transporter substrate bi... [more]
A0A6L5FLL6_9HYPH1.190e-11463.91Tripartite tricarboxylate transporter substrate bi... [more]
A0A6N7GNQ9_9HYPH2.590e-11062.83Tripartite tricarboxylate transporter substrate bi... [more]
A0A345ZW52_9HYPH3.140e-10963.49Tripartite tricarboxylate transporter substrate bi... [more]
A0A537VJ50_9PROT1.350e-10762.69Tripartite tricarboxylate transporter substrate bi... [more]
A0A537MWG9_9PROT1.730e-10761.99Tripartite tricarboxylate transporter substrate bi... [more]
A0A7V8NUH7_9BACT3.630e-10459.85Tripartite tricarboxylate transporter substrate bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12725contigP-wetherbeei_contig12725:1126..1947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog883078.HMPREF9695_00443
PFAMsTctC
Model size822
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.26e-83
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2U0X0@28211|Alphaproteobacteria,3JVIK@41294|Bradyrhizobiaceae
DescriptionTripartite tricarboxylate transporter family receptor
Cds size810
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.7885354-UTR-P-wetherbeei_contig12725:1125..11371683185958.7885354-UTR-P-wetherbeei_contig12725:1125..1137Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12725 1126..1137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.8011067-CDS-P-wetherbeei_contig12725:1137..19471683185958.8011067-CDS-P-wetherbeei_contig12725:1137..1947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12725 1138..1947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12725.2.1prot_P-wetherbeei_contig12725.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12725 1138..1947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12725.2.1

>prot_P-wetherbeei_contig12725.2.1 ID=prot_P-wetherbeei_contig12725.2.1|Name=mRNA_P-wetherbeei_contig12725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
MSKFLPVIAAAGLLLAAPHAQAQDAASYPNKPIKVMVTVPAGGGVDTVTR
IVTEKMRQKLGQPLIIENRGGAGGNLAAEYVFNAPPDGYQLMASQPSPIT
TNAVLYKQIAIDPSKFEFVGIMSIIPNVLLVKNDFPAKTAQEFVAYAKAN
PGKLNYASQGPGTTSHLTAELFEDMAGTKLVHVPYKGTAPALNDLVAGHV
DFIFMQLEAAIKLHEGKKARILAVTTSKRHPDLPDIPTMEEAGVKLISDT
WNALSAPPKTPAPLVATLTA
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mRNA from alignment at P-wetherbeei_contig12725:1126..1947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12725.2.1 ID=mRNA_P-wetherbeei_contig12725.2.1|Name=mRNA_P-wetherbeei_contig12725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig12725:1126..1947+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGACGGACCAATGTCGAAATTTCTGCCCGTGATTGCGGCCGCCGGCCT TCTGCTCGCGGCCCCGCACGCCCAGGCGCAAGATGCCGCCAGCTATCCGA ACAAGCCGATCAAGGTGATGGTGACGGTTCCGGCTGGCGGCGGCGTCGAC ACGGTGACGCGCATCGTCACCGAGAAGATGCGCCAGAAGCTCGGCCAGCC GCTCATCATCGAGAACCGCGGCGGCGCCGGCGGCAATCTAGCGGCCGAAT ACGTGTTCAACGCCCCGCCGGACGGCTACCAGCTGATGGCGTCGCAGCCG TCGCCGATCACGACCAACGCGGTTCTCTACAAGCAGATCGCCATCGACCC TTCGAAGTTCGAATTCGTCGGCATCATGTCGATCATTCCGAACGTGCTGC TGGTGAAGAACGATTTCCCGGCCAAGACCGCGCAGGAATTCGTCGCCTAC GCCAAGGCCAATCCCGGCAAGCTGAACTATGCCTCGCAGGGGCCGGGCAC GACCTCGCATCTCACCGCCGAGCTGTTCGAGGACATGGCCGGGACCAAGC TCGTGCACGTGCCGTACAAGGGCACCGCGCCTGCGCTGAACGACCTGGTG GCGGGACACGTCGATTTCATCTTCATGCAACTCGAAGCGGCCATCAAACT GCACGAAGGCAAGAAGGCGCGCATCCTGGCGGTGACGACCAGCAAGCGTC ATCCCGACCTGCCGGATATTCCGACCATGGAAGAAGCCGGCGTGAAGCTG ATCTCCGACACCTGGAACGCGCTCTCCGCGCCGCCCAAGACGCCCGCGCC GCTCGTCGCCACGCTCACTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12725:1126..1947+

>mRNA_P-wetherbeei_contig12725.2.1 ID=mRNA_P-wetherbeei_contig12725.2.1|Name=mRNA_P-wetherbeei_contig12725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig12725:1126..1947+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAAATTTCTGCCCGTGATTGCGGCCGCCGGCCTTCTGCTCGCGGC
CCCGCACGCCCAGGCGCAAGATGCCGCCAGCTATCCGAACAAGCCGATCA
AGGTGATGGTGACGGTTCCGGCTGGCGGCGGCGTCGACACGGTGACGCGC
ATCGTCACCGAGAAGATGCGCCAGAAGCTCGGCCAGCCGCTCATCATCGA
GAACCGCGGCGGCGCCGGCGGCAATCTAGCGGCCGAATACGTGTTCAACG
CCCCGCCGGACGGCTACCAGCTGATGGCGTCGCAGCCGTCGCCGATCACG
ACCAACGCGGTTCTCTACAAGCAGATCGCCATCGACCCTTCGAAGTTCGA
ATTCGTCGGCATCATGTCGATCATTCCGAACGTGCTGCTGGTGAAGAACG
ATTTCCCGGCCAAGACCGCGCAGGAATTCGTCGCCTACGCCAAGGCCAAT
CCCGGCAAGCTGAACTATGCCTCGCAGGGGCCGGGCACGACCTCGCATCT
CACCGCCGAGCTGTTCGAGGACATGGCCGGGACCAAGCTCGTGCACGTGC
CGTACAAGGGCACCGCGCCTGCGCTGAACGACCTGGTGGCGGGACACGTC
GATTTCATCTTCATGCAACTCGAAGCGGCCATCAAACTGCACGAAGGCAA
GAAGGCGCGCATCCTGGCGGTGACGACCAGCAAGCGTCATCCCGACCTGC
CGGATATTCCGACCATGGAAGAAGCCGGCGTGAAGCTGATCTCCGACACC
TGGAACGCGCTCTCCGCGCCGCCCAAGACGCCCGCGCCGCTCGTCGCCAC
GCTCACTGCG
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