mRNA_P-wetherbeei_contig12712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12712.1.1
Unique NamemRNA_P-wetherbeei_contig12712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: UPI00199D0B79 (Glutamate--cysteine ligase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI00199D0B79)

HSP 1 Score: 74.3 bits (181), Expect = 6.590e-16
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS +QDRL+AL P  L  IRRGIEKESLR +P+GALA  PHP  LGSAL+HP
Sbjct:    1 MSDLQDRLRALSPGVLTGIRRGIEKESLRAQPNGALALTPHPVALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A1F3ZT28_9PROT (Glutamate--cysteine ligase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F3ZT28_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.540e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            M+ +Q+RL+ L PA L++I RGIEKESLRV+PDGALAA PHPA LGSAL+HP
Sbjct:    1 MNQLQERLRLLSPALLKDIHRGIEKESLRVQPDGALAATPHPAALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A109BQR5_9BURK (Glutamate--cysteine ligase n=5 Tax=unclassified Variovorax TaxID=663243 RepID=A0A109BQR5_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 3.470e-15
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS +Q+RL AL PA L+ +RRGIEKESLR +PDG LAA PHPA LGSAL+HP
Sbjct:    1 MSKLQERLGALAPARLKGVRRGIEKESLRAQPDGKLAATPHPAALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A653JVB7_9BURK (Glutamate--cysteine ligase n=1 Tax=Burkholderiales bacterium 8X TaxID=2653183 RepID=A0A653JVB7_9BURK)

HSP 1 Score: 76.6 bits (187), Expect = 4.750e-15
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS IQ+RL AL PA LR IRRGIEKESLR  PDG LA  PHPA LGSAL+HP
Sbjct:    1 MSKIQERLGALAPARLRGIRRGIEKESLRAAPDGQLALTPHPAALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A244EFH9_9BURK (Glutamate--cysteine ligase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A244EFH9_9BURK)

HSP 1 Score: 75.9 bits (185), Expect = 8.870e-15
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS +Q+RL AL PA L+ +RRGIEKESLRV+PDG LA  PHPA LGSAL+HP
Sbjct:    1 MSKLQERLGALTPARLKGVRRGIEKESLRVQPDGKLALTPHPAALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A1F3X9K1_9PROT (Glutamate--cysteine ligase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3X9K1_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.650e-14
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS  Q+RL+AL P  L +IRRGIEKESLRVRPDGALA  PHP  LGSAL+HP
Sbjct:    1 MSHFQERLRALAPELLNSIRRGIEKESLRVRPDGALADTPHPRPLGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A6P2EKE4_9BURK (Glutamate--cysteine ligase n=1 Tax=Variovorax sp. PBL-H6 TaxID=434009 RepID=A0A6P2EKE4_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 2.260e-14
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS + +RL AL PA L+ +RRGIEKESLR +PDG LAA PHPA LGSAL+HP
Sbjct:    1 MSKLPERLGALAPARLKGVRRGIEKESLRAQPDGKLAATPHPAALGSALTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A1F4FA28_9PROT (Glutamate--cysteine ligase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA28_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 3.090e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            M  +++RL++L P+ LR +RRGIEKESLRV+PDGALA  PHPA LGSAL+HP
Sbjct:    1 MRGLEERLRSLPPSVLRGLRRGIEKESLRVQPDGALALTPHPAALGSALAHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A5C8IUM3_9BURK (Glutamate--cysteine ligase n=1 Tax=Ottowia sp. GY511 TaxID=2603274 RepID=A0A5C8IUM3_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 3.090e-14
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            M+ ++DRL  +GP  LR IRRGIEKESLR RPDG LA  PHPA LGS L+HP
Sbjct:    1 MNNLRDRLNGVGPERLRGIRRGIEKESLRARPDGTLALTPHPAALGSPLTHP 52
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BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Match: A0A1L1PR85_HYDIT (Glutamate--cysteine ligase n=4 Tax=Hydrogenophaga TaxID=47420 RepID=A0A1L1PR85_HYDIT)

HSP 1 Score: 74.3 bits (181), Expect = 3.090e-14
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALSHP 156
            MS +Q RL ALGP  LR +RRG+EKESLR +PDG LA  PHPA LGSAL+HP
Sbjct:    1 MSALQQRLAALGPERLRGMRRGLEKESLRSQPDGKLALTPHPAALGSALTHP 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199D0B796.590e-1669.23Glutamate--cysteine ligase n=1 Tax=Cytophagales ba... [more]
A0A1F3ZT28_9PROT2.540e-1571.15Glutamate--cysteine ligase n=1 Tax=Betaproteobacte... [more]
A0A109BQR5_9BURK3.470e-1571.15Glutamate--cysteine ligase n=5 Tax=unclassified Va... [more]
A0A653JVB7_9BURK4.750e-1575.00Glutamate--cysteine ligase n=1 Tax=Burkholderiales... [more]
A0A244EFH9_9BURK8.870e-1571.15Glutamate--cysteine ligase n=2 Tax=unclassified Va... [more]
A0A1F3X9K1_9PROT1.650e-1473.08Glutamate--cysteine ligase n=2 Tax=unclassified Be... [more]
A0A6P2EKE4_9BURK2.260e-1469.23Glutamate--cysteine ligase n=1 Tax=Variovorax sp. ... [more]
A0A1F4FA28_9PROT3.090e-1467.31Glutamate--cysteine ligase n=1 Tax=Betaproteobacte... [more]
A0A5C8IUM3_9BURK3.090e-1467.31Glutamate--cysteine ligase n=1 Tax=Ottowia sp. GY5... [more]
A0A1L1PR85_HYDIT3.090e-1469.23Glutamate--cysteine ligase n=4 Tax=Hydrogenophaga ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12712contigP-wetherbeei_contig12712:168..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog296591.Bpro_3399
Preferred namegshA
PFAMsGlu_cys_ligase
Model size156
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00064,RC00090
KEGG koko:K01919
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,map00270,map00480,map01100
KEGG ModuleM00118
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.94e-13
EggNOG OGsCOG2918@1|root,COG2918@2|Bacteria,1MW9B@1224|Proteobacteria,2VKVU@28216|Betaproteobacteria,4AA8S@80864|Comamonadaceae
EC6.3.2.2
DescriptionBelongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily
Cds size156
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.3373113-CDS-P-wetherbeei_contig12712:167..3231683185958.3373113-CDS-P-wetherbeei_contig12712:167..323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12712 168..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12712.1.1prot_P-wetherbeei_contig12712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12712 168..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12712.1.1

>prot_P-wetherbeei_contig12712.1.1 ID=prot_P-wetherbeei_contig12712.1.1|Name=mRNA_P-wetherbeei_contig12712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MSTIQDRLQALGPAALRNIRRGIEKESLRVRPDGALAADPHPAGLGSALS
HP
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mRNA from alignment at P-wetherbeei_contig12712:168..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12712.1.1 ID=mRNA_P-wetherbeei_contig12712.1.1|Name=mRNA_P-wetherbeei_contig12712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig12712:168..323- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACAATCCAGGATCGCCTGCAGGCGCTAGGCCCGGCTGCCCTCAG
GAACATCCGCCGCGGCATCGAGAAGGAAAGCCTGCGCGTGCGCCCCGACG
GCGCACTGGCCGCAGACCCGCATCCGGCGGGCCTCGGCTCGGCGCTGAGC
CATCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12712:168..323-

>mRNA_P-wetherbeei_contig12712.1.1 ID=mRNA_P-wetherbeei_contig12712.1.1|Name=mRNA_P-wetherbeei_contig12712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig12712:168..323- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACAATCCAGGATCGCCTGCAGGCGCTAGGCCCGGCTGCCCTCAG
GAACATCCGCCGCGGCATCGAGAAGGAAAGCCTGCGCGTGCGCCCCGACG
GCGCACTGGCCGCAGACCCGCATCCGGCGGGCCTCGGCTCGGCGCTGAGC
CATCCG
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