mRNA_P-wetherbeei_contig12684.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12684.5.1
Unique NamemRNA_P-wetherbeei_contig12684.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 291 bits (746), Expect = 5.680e-96
Identity = 150/201 (74.63%), Postives = 158/201 (78.61%), Query Frame = 1
Query:    1 PQVIPIYCNRCGFGPPVGVTQPSTCSWLDHSVSGLMQRTERPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGL-RPPTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSVPWVRFLPLCIR 600
            PQ+IP + NR GFGPPVGVT PSTC W+DHSVSGLM  T RPIQTRFR AYTYRLKLA YT SLTHYTKGTPS   R PT CR  VSG++SLPLSGCFSPFPHGT SLSV  EYLGLE G PMFRQDFTCPALLK +   T TGLSPA A LS  F    + HWPGPRSLATT GVSVDVLSS YLDVSV  VR L LCI+
Sbjct:    7 PQIIPDFFNRRGFGPPVGVTPPSTCPWIDHSVSGLMHATRRPIQTRFRCAYTYRLKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFTPTGLSPAMARLSRRFRLCKYQHWPGPRSLATTNGVSVDVLSSGYLDVSVRPVRLLNLCIQ 207          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 284 bits (727), Expect = 2.450e-93
Identity = 146/185 (78.92%), Postives = 151/185 (81.62%), Query Frame = 1
Query:   76 SWLDHSVSGLMQRT----------ERPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRPPTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSVPWVRFLPLCIR 600
            SW   + S LM R+           RP+QTRFRYAYTYRLKLA YTKSLTHYTKGTPS LR PTVCR PVSGSISLP SGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDN+CST TGLSP  A LS  F FIP CHWPGPRSLATT GVSVDVLS RYLDVSVP VRFL LCI+
Sbjct:    7 SWCYPTFSLLMARSLGFGSNATYYGRPVQTRFRYAYTYRLKLACYTKSLTHYTKGTPSPLRAPTVCRHPVSGSISLPSSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNQCSTPTGLSPTIAKLSNLFGFIPDCHWPGPRSLATTCGVSVDVLSCRYLDVSVPCVRFLSLCIQ 191          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 298 bits (764), Expect = 2.330e-92
Identity = 161/242 (66.53%), Postives = 167/242 (69.01%), Query Frame = 1
Query:  112 RTERPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRPPTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSVPWVRFLPLCIRK*DTLYQCLET*AVPKNNLNFLGI*GGFPHSEIHGSKLIR--SSPQLIAAYHVLHRLCMPRHPPIALTTLNRSHCQCSS 831
            + E    TRFR AYTYRLKLA YTKSLTHYTKGTPSGLRPPT CR PVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECST TGLSP  A LS  F FIPHCHWPGPRSLATT GVSVDVLS R L            C                              PH +  G +  R  S+     +YHVLHRLCMPRHPP ALTTL+RSHCQCSS
Sbjct:  585 KEESSASTRFRCAYTYRLKLASYTKSLTHYTKGTPSGLRPPTACRHPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTSTGLSPILARLSNLFDFIPHCHWPGPRSLATTCGVSVDVLSCRNL-----------FC------------------------------PHGQ--GLRTARRISADGRAPSYHVLHRLCMPRHPPNALTTLDRSHCQCSS 783          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 205 bits (522), Expect = 8.430e-58
Identity = 111/150 (74.00%), Postives = 115/150 (76.67%), Query Frame = 1
Query:  121 RPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRP-PTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSV 567
            RPIQTRFR A TYRLKLA Y+KSLTHYTKGTPS     PT CR PVSG++SLPLSGCFSPFPHGT +LSV  EYLGLE G PMFRQ FTCPALL D      TGLSPA A LS  F      HWPGPRSLATT GVSVDVLSS YLDVSV
Sbjct:    5 RPIQTRFRCASTYRLKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDCFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGYLDVSV 154          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 206 bits (525), Expect = 7.500e-57
Identity = 111/150 (74.00%), Postives = 115/150 (76.67%), Query Frame = 1
Query:  121 RPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRP-PTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSV 567
            RPIQTRFR A TYRLKLA Y+KSLTHYTKGTPS     PT CR PVSG++SLPLSGCFSPFPHGT +LSV  EYLGLE G PMFRQ FTCPALL D      TGLSPA A LS  F      HWPGPRSLATT GVSVDVLSS YLDVSV
Sbjct:    5 RPIQTRFRCASTYRLKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGYLDVSV 154          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 206 bits (525), Expect = 7.730e-57
Identity = 111/150 (74.00%), Postives = 115/150 (76.67%), Query Frame = 1
Query:  121 RPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRP-PTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSV 567
            RPIQTRFR A TYRLKLA Y+KSLTHYTKGTPS     PT CR PVSG++SLPLSGCFSPFPHGT +LSV  EYLGLE G PMFRQ FTCPALL D      TGLSPA A LS  F      HWPGPRSLATT GVSVDVLSS YLDVSV
Sbjct:    5 RPIQTRFRCASTYRLKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGYLDVSV 154          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: D1CZ21_9HYPH (Uncharacterized protein (Fragment) n=7 Tax=Brucella TaxID=234 RepID=D1CZ21_9HYPH)

HSP 1 Score: 184 bits (466), Expect = 2.500e-55
Identity = 91/117 (77.78%), Postives = 94/117 (80.34%), Query Frame = 1
Query:  232 PTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSVPWVRF 582
            PTVCR PVSG++SLP SG FSPFPHGT SLSVMHEYLGL+ G PMFRQDFTCPALLKD   STCTGLSP     S  FHFI   HWPGPRSLATT GVS DVLSS YLDVSVP VRF
Sbjct:   19 PTVCRHPVSGTVSLPSSGYFSPFPHGTGSLSVMHEYLGLDRGRPMFRQDFTCPALLKDFCYSTCTGLSPTSVEFSNSFHFIHKSHWPGPRSLATTSGVSFDVLSSGYLDVSVPQVRF 135          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 137 bits (346), Expect = 2.100e-36
Identity = 84/163 (51.53%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  163 LKLARYTKSLTHYTKGTPSGLR-PPTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPG----------------PRSLATTYGVSVDVLSSRYLDVSVPWVRFLPLCIR 600
            + LA   KSLTHYTKGTPS L+  PT CR+PVS ++SLP SGCFSPFPHGT SLSV  EYL  E G P+FRQDFTCPALL          L P +      +H +    WPG                P S ATT G+SVD  S  YLDVSV  VRF  L I+
Sbjct:    1 VNLATECKSLTHYTKGTPSPLKGAPTACRRPVSETVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLV-------VPLVPQRGFRIQGYHLL----WPGFPSRFANHTAKKYKAHPISFATTLGISVDFCSCSYLDVSVRRVRFPHLWIQ 152          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A2P2J3P6_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J3P6_RHIMU)

HSP 1 Score: 130 bits (328), Expect = 2.410e-35
Identity = 62/75 (82.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:  328 MHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRY 552
            MHEYLGLESGLPMFRQDFTCPALLKDN+CST  GLSP+ A  S  F FI HCHWPGPRSLATT GVSVDVLSS Y
Sbjct:    1 MHEYLGLESGLPMFRQDFTCPALLKDNDCSTRKGLSPSMADFSKSFRFIHHCHWPGPRSLATTSGVSVDVLSSGY 75          
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 143 bits (361), Expect = 3.620e-35
Identity = 109/275 (39.64%), Postives = 127/275 (46.18%), Query Frame = 1
Query:    1 PQVIPIYCNRCGFGPPVGVTQPSTCSWLDHSVSGLMQRTERPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRPPTVCRQPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYLDVSVPWVRFLPLCIRK*DTLYQCLET*AVPKNNLNFLGI*GGFPHSEIHGSKLIRSSPQLIAAYHVLHRLCMPRHPPIALTTLNRSHCQC 825
            P VI    N   FGPPVGVT PS+C+WLDHSVSGL  RTERP+QTRFR A TYRLKLAR  KSLTHYTKGT          R P + ++ LPL             +S+  +  G     P        P            G  P++     PF  +PH                     SR  D ++  V                                 GGFPHSEI GSKL+RSSP+LIAAYHVL RL  PRHPP AL  L+RS  +C
Sbjct:  442 PHVIQDLFNGHWFGPPVGVTPPSSCTWLDHSVSGLKPRTERPVQTRFRCASTYRLKLARNFKSLTHYTKGT----------RSPRT-NLGLPLF------------VSIRFQ-TGFHVSRPTRVLALNRPV----------RGCHPSRR----PFQTVPH------------------QTGSRQSDTAIRKVE--------------------------------GGFPHSEIPGSKLVRSSPRLIAAYHVLLRLSAPRHPPNALKALDRSRDRC 628          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12684.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q3BKI1_9PROT5.680e-9674.63Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
UPI001A08AA192.450e-9378.92Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]
A0A6A5L965_LUPAL2.330e-9266.53Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L4G5_LUPAL8.430e-5874.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL7.500e-5774.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL7.730e-5774.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
D1CZ21_9HYPH2.500e-5577.78Uncharacterized protein (Fragment) n=7 Tax=Brucell... [more]
A0A2S2PQL9_SCHGA2.100e-3651.53Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A2P2J3P6_RHIMU2.410e-3582.67Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A6A5L1U4_LUPAL3.620e-3539.64Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12684contigP-wetherbeei_contig12684:1121..1952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1430440.MGMSRv2_1983
Model size832
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.92e-74
EggNOG OGs2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.6496787-UTR-P-wetherbeei_contig12684:1120..13461683185956.6496787-UTR-P-wetherbeei_contig12684:1120..1346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12684 1121..1346 -
1683185956.667506-UTR-P-wetherbeei_contig12684:1847..19521683185956.667506-UTR-P-wetherbeei_contig12684:1847..1952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12684 1848..1952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.6592512-CDS-P-wetherbeei_contig12684:1346..18471683185956.6592512-CDS-P-wetherbeei_contig12684:1346..1847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12684 1347..1847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12684.5.1prot_P-wetherbeei_contig12684.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12684 1347..1847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12684.5.1

>prot_P-wetherbeei_contig12684.5.1 ID=prot_P-wetherbeei_contig12684.5.1|Name=mRNA_P-wetherbeei_contig12684.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MQRTERPIQTRFRYAYTYRLKLARYTKSLTHYTKGTPSGLRPPTVCRQPV
SGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKD
NECSTCTGLSPAKAGLSIPFHFIPHCHWPGPRSLATTYGVSVDVLSSRYL
DVSVPWVRFLPLCIRK*
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mRNA from alignment at P-wetherbeei_contig12684:1121..1952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12684.5.1 ID=mRNA_P-wetherbeei_contig12684.5.1|Name=mRNA_P-wetherbeei_contig12684.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=832bp|location=Sequence derived from alignment at P-wetherbeei_contig12684:1121..1952- (Phaeothamnion wetherbeei SAG_119_79)
CCACAAGTCATCCCAATCTATTGCAACAGATGCGGGTTCGGTCCTCCAGT TGGTGTTACCCAACCTTCAACCTGCTCATGGCTAGATCACTCGGTTTCGG GTCTAATGCAACGAACTGAACGCCCTATTCAGACTCGCTTTCGCTACGCC TACACCTATCGGCTTAAGCTTGCTCGTTACACTAAGTCGTTGACCCATTA TACAAAAGGTACGCCGTCAGGCTTGCGCCCTCCGACTGTTTGTAGGCAAC CGGTTTCAGGATCTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTC CCTCACGGTACTTGTTCACTATCGGTCATGCACGAGTACTTAGGCTTGGA GAGTGGTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCA AGGACAATGAGTGTTCTACGTGTACGGGGCTATCACCCGCTAAGGCCGGA CTTTCCATTCCGTTCCACTTCATTCCTCATTGCCACTGGCCTGGTCCGCG TTCGCTCGCCACTACTTACGGAGTCTCGGTTGATGTCCTTTCCTCCAGGT ACTTAGATGTTTCAGTTCCCTGGGTTCGCTTCTTACCCCTATGTATTCGA AAGTAAGATACCTTATATCAATGCCTAGAAACCTAAGCCGTTCCGAAGAA CAACTTAAACTTTCTAGGCATTTAAGGTGGGTTTCCCCATTCGGAAATCC ATGGATCAAAGCTCATTCGCAGCTCCCCACAGCTTATCGCAGCGTATCAC GTCCTTCATCGCCTGTGCATGCCAAGGCATCCACCAATTGCCCTTACGAC ACTTAATCGTTCTCATTGCCAATGCTCATCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12684:1121..1952-

>mRNA_P-wetherbeei_contig12684.5.1 ID=mRNA_P-wetherbeei_contig12684.5.1|Name=mRNA_P-wetherbeei_contig12684.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig12684:1121..1952- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACGAACTGAACGCCCTATTCAGACTCGCTTTCGCTACGCCTACAC
CTATCGGCTTAAGCTTGCTCGTTACACTAAGTCGTTGACCCATTATACAA
AAGGTACGCCGTCAGGCTTGCGCCCTCCGACTGTTTGTAGGCAACCGGTT
TCAGGATCTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCA
CGGTACTTGTTCACTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGTG
GTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCAAGGAC
AATGAGTGTTCTACGTGTACGGGGCTATCACCCGCTAAGGCCGGACTTTC
CATTCCGTTCCACTTCATTCCTCATTGCCACTGGCCTGGTCCGCGTTCGC
TCGCCACTACTTACGGAGTCTCGGTTGATGTCCTTTCCTCCAGGTACTTA
GATGTTTCAGTTCCCTGGGTTCGCTTCTTACCCCTATGTATTCGAAAGTA
A
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