mRNA_P-wetherbeei_contig12681.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12681.1.1
Unique NamemRNA_P-wetherbeei_contig12681.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A835ZE93_9STRA (BED-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE93_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.710e-24
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+  E +KE  WCFYCDR F++EEVLIQHQKAKHFKC +CNKKLTT  G+ +H QQVH
Sbjct:    1 MGKKKKQKVEEEKEQPWCFYCDRVFDHEEVLIQHQKAKHFKCLVCNKKLTTAGGLVVHCQQVH 63
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BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A7S3YKR3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKR3_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 3.580e-24
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKKKT   ++E  WCFYC+R FE+E+VLIQHQK+KHFKC +CNKKL+T  GM +H  QVH
Sbjct:    1 MGKKKKKTAVREEEKPWCFYCERIFEDEKVLIQHQKSKHFKCHVCNKKLSTAGGMVVHCLQVH 63
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BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: UPI0019240AF9 (protein SUPPRESSOR OF FRI 4-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019240AF9)

HSP 1 Score: 89.4 bits (220), Expect = 7.870e-22
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ +      +WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRVSST----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 59
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A2P2K923_RHIMU (Protein SUPPRESSOR OF FRI 4 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K923_RHIMU)

HSP 1 Score: 88.6 bits (218), Expect = 9.430e-22
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ +      +WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRASSK----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 59
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A427B758_ENSVE (BED-type domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427B758_ENSVE)

HSP 1 Score: 89.0 bits (219), Expect = 1.320e-21
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ ++V     WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRPSKV-----WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 58
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A5A7PK62_STRAF (Zinc finger family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PK62_STRAF)

HSP 1 Score: 95.1 bits (235), Expect = 1.610e-21
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKKK   VDK  +WC+YCDR FE+E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKKRGAVDK--MWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 61
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A8B8N7B5_9MYRT (protein SUPPRESSOR OF FRI 4-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8N7B5_9MYRT)

HSP 1 Score: 88.6 bits (218), Expect = 1.980e-21
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ +      +WC+YCDR F++E++L+QHQKAKHFKC  C+KKL+T SGM IH  QVH
Sbjct:    1 MGKKKKRASSK----VWCYYCDREFDDEKILVQHQKAKHFKCHACHKKLSTASGMAIHVLQVH 59
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A2I0AJ76_9ASPA (BED-type domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AJ76_9ASPA)

HSP 1 Score: 89.0 bits (219), Expect = 2.040e-21
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ ++V     WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRPSKV-----WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 58
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A834FYY0_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FYY0_RHOSS)

HSP 1 Score: 88.6 bits (218), Expect = 2.090e-21
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+      +++WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRAA---LKEVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVH 60
[Close]
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Match: A0A426Z810_ENSVE (BED-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426Z810_ENSVE)

HSP 1 Score: 87.8 bits (216), Expect = 2.570e-21
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLTTGSGMKIHAQQVH 189
            MGKKKK+ +++     WC+YCDR F++E++L+QHQKAKHFKC +C+KKL+T  GM IH  QVH
Sbjct:    1 MGKKKKRPSKM-----WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12681.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE93_9STRA2.710e-2471.43BED-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3YKR3_HETAK3.580e-2466.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0019240AF97.870e-2258.73protein SUPPRESSOR OF FRI 4-like n=1 Tax=Hibiscus ... [more]
A0A2P2K923_RHIMU9.430e-2258.73Protein SUPPRESSOR OF FRI 4 n=1 Tax=Rhizophora muc... [more]
A0A427B758_ENSVE1.320e-2160.32BED-type domain-containing protein n=2 Tax=Ensete ... [more]
A0A5A7PK62_STRAF1.610e-2166.67Zinc finger family protein n=1 Tax=Striga asiatica... [more]
A0A8B8N7B5_9MYRT1.980e-2160.32protein SUPPRESSOR OF FRI 4-like n=1 Tax=Rhodamnia... [more]
A0A2I0AJ76_9ASPA2.040e-2160.32BED-type domain-containing protein n=1 Tax=Apostas... [more]
A0A834FYY0_RHOSS2.090e-2158.73Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A426Z810_ENSVE2.570e-2158.73BED-type domain-containing protein n=1 Tax=Ensete ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12681contigP-wetherbeei_contig12681:1..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog264402.Cagra.1508s0093.1.p
Model size189
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009889,GO:0009909,GO:0009910,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048519,GO:0048580,GO:0048581,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2001141
Exons2
Evalue7.61e-22
EggNOG OGsKOG2893@1|root,KOG2893@2759|Eukaryota,37PP4@33090|Viridiplantae,3GD51@35493|Streptophyta,3HVE4@3699|Brassicales
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-20_000610.1
DescriptionSUPPRESSOR of
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.5428321-CDS-P-wetherbeei_contig12681:0..1391683185956.5428321-CDS-P-wetherbeei_contig12681:0..139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12681 1..139 -
1683185956.5512817-CDS-P-wetherbeei_contig12681:485..5351683185956.5512817-CDS-P-wetherbeei_contig12681:485..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12681 486..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12681.1.1prot_P-wetherbeei_contig12681.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12681 1..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12681.1.1

>prot_P-wetherbeei_contig12681.1.1 ID=prot_P-wetherbeei_contig12681.1.1|Name=mRNA_P-wetherbeei_contig12681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MGKKKKKTTEVDKEDIWCFYCDRSFENEEVLIQHQKAKHFKCSICNKKLT
TGSGMKIHAQQVH
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mRNA from alignment at P-wetherbeei_contig12681:1..535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12681.1.1 ID=mRNA_P-wetherbeei_contig12681.1.1|Name=mRNA_P-wetherbeei_contig12681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=535bp|location=Sequence derived from alignment at P-wetherbeei_contig12681:1..535- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAAAGAAGAAGAAGAAGACGACAGAGGTCGATAAGGAGGACATATG
GTGAGCCTCCGTGCCTGGCTTATCGGGAAAATGGCAGTGGTTGGGACGTT
CCGGACTTTACCCATTCGCCTTGTTGTGCGAATGGCGGGAAAGAAGGGCA
CAGGGCACTCGCCGCTGAAAAAGACGGACCGTGGCTCTTGTGATTTGCCT
CGATCGGGCCTCCGACGCCGGAACGTTGGGTGTGCAATGCAATTTCGAAA
AAAGGCACCTTCGCCTTCGTGATATGGAATGGTGTTTTGAAACATTCCAA
ACCTCTCTTTGCACGACTTTCGCAGGCCTCTCGCGTCTCCTTTCGCTCAT
TACGTCCTTATTTTTGGTTTCTTTGCGCTTCAACCATTCTTTTCAGGTGC
TTTTACTGCGACCGCTCCTTCGAGAATGAGGAGGTTTTGATCCAGCACCA
AAAAGCGAAGCACTTCAAATGCAGCATCTGCAACAAGAAGCTGACCACGG
GCTCCGGGATGAAAATCCATGCCCAGCAGGTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12681:1..535-

>mRNA_P-wetherbeei_contig12681.1.1 ID=mRNA_P-wetherbeei_contig12681.1.1|Name=mRNA_P-wetherbeei_contig12681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig12681:1..535- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAAAGAAGAAGAAGAAGACGACAGAGGTCGATAAGGAGGACATATG
GTGCTTTTACTGCGACCGCTCCTTCGAGAATGAGGAGGTTTTGATCCAGC
ACCAAAAAGCGAAGCACTTCAAATGCAGCATCTGCAACAAGAAGCTGACC
ACGGGCTCCGGGATGAAAATCCATGCCCAGCAGGTCCAC
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