mRNA_P-wetherbeei_contig12675.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12675.2.1
Unique NamemRNA_P-wetherbeei_contig12675.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12675.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12675contigP-wetherbeei_contig12675:1628..1933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVC4
Preferred nameHERC1
PFAMsCLTH,HECT,RCC1,SPRY,WD40
Model size308
Max annot lvl2759|Eukaryota
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue3.69e-08
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
EC2.3.2.26
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Cds size306
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.431573-CDS-P-wetherbeei_contig12675:1627..19331683185956.431573-CDS-P-wetherbeei_contig12675:1627..1933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12675 1628..1933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12675.2.1prot_P-wetherbeei_contig12675.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12675 1628..1933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12675.2.1

>prot_P-wetherbeei_contig12675.2.1 ID=prot_P-wetherbeei_contig12675.2.1|Name=mRNA_P-wetherbeei_contig12675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
SAAALPAPKTLSVEASADGGATWHNITGGGGALAINAVSTVQPRGARHRY
PVTLAPLREAANQTAATAAAAAAAATTAGEGLDAAATAGPPQVTHLRLLM
HG
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mRNA from alignment at P-wetherbeei_contig12675:1628..1933-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12675.2.1 ID=mRNA_P-wetherbeei_contig12675.2.1|Name=mRNA_P-wetherbeei_contig12675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig12675:1628..1933- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGGCGGCGCTCCCGGCGCCCAAGACCCTCTCCGTCGAGGCCTCGGC
GGACGGCGGGGCCACATGGCACAACATTACCGGCGGCGGTGGCGCCTTGG
CAATCAACGCTGTCTCCACCGTTCAGCCGCGGGGCGCCCGCCACCGCTAC
CCCGTCACCCTGGCGCCGCTGCGGGAGGCGGCTAACCAAACAGCGGCAAC
GGCGGCAGCAGCGGCGGCGGCGGCAACTACAGCAGGGGAGGGGCTGGATG
CTGCAGCGACGGCGGGGCCGCCGCAGGTGACGCACCTGCGGCTGCTTATG
CACGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12675:1628..1933-

>mRNA_P-wetherbeei_contig12675.2.1 ID=mRNA_P-wetherbeei_contig12675.2.1|Name=mRNA_P-wetherbeei_contig12675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig12675:1628..1933- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGGCGGCGCTCCCGGCGCCCAAGACCCTCTCCGTCGAGGCCTCGGC
GGACGGCGGGGCCACATGGCACAACATTACCGGCGGCGGTGGCGCCTTGG
CAATCAACGCTGTCTCCACCGTTCAGCCGCGGGGCGCCCGCCACCGCTAC
CCCGTCACCCTGGCGCCGCTGCGGGAGGCGGCTAACCAAACAGCGGCAAC
GGCGGCAGCAGCGGCGGCGGCGGCAACTACAGCAGGGGAGGGGCTGGATG
CTGCAGCGACGGCGGGGCCGCCGCAGGTGACGCACCTGCGGCTGCTTATG
CACGGG
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