mRNA_P-wetherbeei_contig1263.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1263.2.1
Unique NamemRNA_P-wetherbeei_contig1263.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A7S3YH54_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH54_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-10
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:  231 AGLHRLAKLLSVTKADNAKALRELK-----------VISAQLEQRTDELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATL 485
            AGL +L K  +  K+D    L++LK           ++  QLE    E+  T+ + HQLK+EN++KWR+EER+DW+ALV SIQ DR+AL  E   L
Sbjct:    8 AGLEKLTKYTAQLKSDYEFKLKDLKDMVIALESENRILKTQLESYEMEVETTRRMVHQLKVENSRKWRVEEREDWKALVASIQEDRKALQGENERL 103
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: D8LPS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS6_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.950e-9
Identity = 82/281 (29.18%), Postives = 117/281 (41.64%), Query Frame = 3 
Query:  234 GLHRLAKLLSVTKADNAKALREL--KVISAQLEQRT---------DELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRKAL-----ALLA------------------QHAVASGGHGLKGT-----------------------VLTAASTTTDEAMANSLREAFIV---GAAALEGDPLAPRSEGTLSPAAAAXXXXXXXXXXGGAGSLCPTCQQDAVSMRLRMQQADVLRAMLETDCREKEREILRLRAELRKTRAPGTA 896
            GL RLA LL+ TK + +  + +L  +V + ++E+RT         DE    K+L  Q +LEN +KWR+EERDDWRAL+ S+QADR AL  +   L   L     ALL+                   +  A+GG   KGT                       V +      D     SL E F V   G  A   D  A R  G  SP               G G     C +  V +     ++D  R  LE+   E+E+E+ +LR E+ ++   G++
Sbjct:   45 GLERLAGLLAATKENASAEISKLDSQVQALEIERRTLEAALETCRDEFGDVKTLVEQFRLENPRKWRVEERDDWRALLDSMQADRTALQRQNDRLEGELTRCITALLSIFPSSSPFPRSGRAKGGDANGTAAGGGDKKGTDDGDHPPELTHRNISSGSDGRRPVSSRGIAAVDLEWVGSLAEEFNVVLEGVVAEGDDGDAGRGSGAGSP--------------NGGGDAASECLRLRVQLDELKHESDTARVALESQVFEQEQELTKLRREVSRSDGKGSS 311
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A7S2DRK3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRK3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.940e-8
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  279 NAKALRELKVISAQLEQRTDELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLR 488
            N +  RE + +  QL+   DEL     L  QLKLEN+KKWR+EER++W++LV ++Q+DR+ L EE   L+
Sbjct:   16 NVELKRENEALQQQLQICLDELDFRNGLVEQLKLENSKKWRIEERNEWKSLVEAVQSDRDELQEENELLK 85
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A7S3NMG5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMG5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.340e-6
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 3 
Query:  297 ELKVISAQLEQRTDELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRK 491
            E+  + A++E   DEL    S  HQLK ENA K+R EERDDW+ALV SIQ DR+ L  E   LR+
Sbjct:   42 EVAQLQAEMEIAKDELQLCWSYVHQLKKENAVKFRFEERDDWKALVHSIQEDRQRLRRENKRLRQ 106
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A7S2V322_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V322_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.680e-6
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 3 
Query:  219 RSEEAGLHRLAKLLSVTKADNAKALRELK-----------VISAQLEQRTDELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRK 491
            R ++ G+ ++    +  K ++   ++ELK            +  Q+E   +E+   +S+  QLK+ENA+KWR+EER+DW+ALV SIQ DR  L  E   L++
Sbjct:   56 REQKDGIAKVRNYAAKVKRESEDQMKELKNMAIAFEGENRCLKEQIENYENEVETLRSMVEQLKIENARKWRVEERNDWKALVKSIQEDRAVLQAENERLKQ 157
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A8J2WTU7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.190e-5
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  309 ISAQLEQRTDELSHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRKALA 500
            + A L+   DEL    +  HQL+LE   K+++EERDDWRALV S+Q DR+ L +E A L+  +A
Sbjct:   39 LKAALDDAADELDLCWAHVHQLRLETTTKFQVEERDDWRALVRSVQEDRQRLQQENARLQALVA 102
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BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Match: A0A7S3LYT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYT1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.390e-5
Identity = 41/103 (39.81%), Postives = 52/103 (50.49%), Query Frame = 3 
Query:  222 SEEAGLHRLAKLLSVTKADNAKALRELKVISAQLEQRTD-------ELSHTKSL----CHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRKAL 497
            SE  GL +L   L+ T+     A+  L V  ++L+Q  D       EL   K        QLK E   K RL+ERDDWR+L+ S+Q DR  L EE  TL  AL
Sbjct:    2 SESEGLQKLTAYLNQTRRQAEAAVDALNVEISRLKQENDAYEAICRELEEEKEQYRLQVEQLKQEGTTKHRLQERDDWRSLIDSVQKDRSRLQEECNTLETAL 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1263.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3YH54_HETAK1.260e-1042.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LPS6_ECTSI8.950e-929.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2DRK3_9STRA6.940e-845.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NMG5_9STRA1.340e-652.31Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2V322_9STRA1.680e-634.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2WTU7_9STRA2.190e-546.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3LYT1_9STRA8.390e-539.81Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1263contigP-wetherbeei_contig1263:2230..3343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1114
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002300.1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.2339067-UTR-P-wetherbeei_contig1263:2229..24231683185955.2339067-UTR-P-wetherbeei_contig1263:2229..2423Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1263 2230..2423 +
1683185955.2495399-UTR-P-wetherbeei_contig1263:3266..33431683185955.2495399-UTR-P-wetherbeei_contig1263:3266..3343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1263 3267..3343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.242097-CDS-P-wetherbeei_contig1263:2423..32661683185955.242097-CDS-P-wetherbeei_contig1263:2423..3266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1263 2424..3266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1263.2.1prot_P-wetherbeei_contig1263.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1263 2424..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1263.2.1

>prot_P-wetherbeei_contig1263.2.1 ID=prot_P-wetherbeei_contig1263.2.1|Name=mRNA_P-wetherbeei_contig1263.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MGEHEEGGRSEEAGLHRLAKLLSVTKADNAKALRELKVISAQLEQRTDEL
SHTKSLCHQLKLENAKKWRLEERDDWRALVTSIQADREALHEETATLRKA
LALLAQHAVASGGHGLKGTVLTAASTTTDEAMANSLREAFIVGAAALEGD
PLAPRSEGTLSPAAAAVAAATATAASGGAGSLCPTCQQDAVSMRLRMQQA
DVLRAMLETDCREKEREILRLRAELRKTRAPGTAAITGDAEDGSGGGGGG
GGLRSTLRLSWLWRSRPTSRLSSISLPQTV*
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mRNA from alignment at P-wetherbeei_contig1263:2230..3343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1263.2.1 ID=mRNA_P-wetherbeei_contig1263.2.1|Name=mRNA_P-wetherbeei_contig1263.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-wetherbeei_contig1263:2230..3343+ (Phaeothamnion wetherbeei SAG_119_79)
CGTTCCATTCCGAAAAGCGCTGAAGCAGGAGGCGGCAAAGAAGTTTGGCG
TCCCTCCGCAACATACAAGGAGCCACCACTCACCACGTTTGACGTGAAAG
AGTAGCGAGGTTCGTAATACCAGAACTTTCGACGAAGCTAACACACGAAA
GTGCGCCATCCGCAAGCCAAGTTACTCGCGGCTGCCCCAGGCGAATGGGG
GAGCACGAGGAAGGCGGGCGAAGCGAGGAAGCTGGCTTGCATCGACTGGC
GAAGCTGCTTTCAGTCACGAAAGCCGACAACGCTAAGGCGTTGCGCGAGC
TCAAAGTCATTTCGGCGCAGCTGGAGCAAAGGACAGACGAGCTGTCGCAC
ACCAAGAGTCTCTGCCATCAGCTAAAGCTAGAGAATGCAAAAAAGTGGCG
GCTAGAAGAAAGAGATGACTGGAGAGCGTTGGTGACCAGCATTCAAGCCG
ACCGCGAGGCCTTGCACGAAGAAACTGCCACCTTACGAAAGGCCTTAGCC
CTGTTGGCGCAGCACGCTGTCGCCTCTGGCGGTCACGGCCTCAAAGGCAC
GGTCTTGACCGCTGCGTCCACCACCACAGACGAAGCCATGGCTAATTCCC
TTCGGGAGGCGTTTATCGTTGGGGCTGCGGCGCTTGAGGGAGATCCCCTA
GCACCAAGGAGCGAGGGGACGCTTTCTCCTGCTGCCGCCGCCGTTGCTGC
CGCCACCGCTACCGCCGCCTCCGGCGGAGCTGGAAGCTTATGTCCCACAT
GTCAGCAGGATGCCGTGTCGATGCGGCTTCGCATGCAGCAAGCGGATGTC
TTGAGGGCGATGCTCGAAACGGACTGCCGAGAAAAAGAGAGAGAGATTCT
GCGGCTACGGGCGGAGCTTCGAAAAACTCGTGCGCCAGGGACGGCTGCCA
TCACCGGCGATGCGGAGGACGGCAGCGGCGGCGGTGGCGGCGGCGGCGGC
TTGCGCTCGACCTTGCGATTATCGTGGCTCTGGCGATCACGACCGACAAG
CAGGCTAAGCTCCATCTCTTTGCCACAAACTGTGTAAGGAACGAAGGAAT
AACAAACCATTCTGAATTGTGCTGGAGGGTTATACATCAGTGGGACTGGA
GTCGTTTGTATGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1263:2230..3343+

>mRNA_P-wetherbeei_contig1263.2.1 ID=mRNA_P-wetherbeei_contig1263.2.1|Name=mRNA_P-wetherbeei_contig1263.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig1263:2230..3343+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGAGCACGAGGAAGGCGGGCGAAGCGAGGAAGCTGGCTTGCATCG
ACTGGCGAAGCTGCTTTCAGTCACGAAAGCCGACAACGCTAAGGCGTTGC
GCGAGCTCAAAGTCATTTCGGCGCAGCTGGAGCAAAGGACAGACGAGCTG
TCGCACACCAAGAGTCTCTGCCATCAGCTAAAGCTAGAGAATGCAAAAAA
GTGGCGGCTAGAAGAAAGAGATGACTGGAGAGCGTTGGTGACCAGCATTC
AAGCCGACCGCGAGGCCTTGCACGAAGAAACTGCCACCTTACGAAAGGCC
TTAGCCCTGTTGGCGCAGCACGCTGTCGCCTCTGGCGGTCACGGCCTCAA
AGGCACGGTCTTGACCGCTGCGTCCACCACCACAGACGAAGCCATGGCTA
ATTCCCTTCGGGAGGCGTTTATCGTTGGGGCTGCGGCGCTTGAGGGAGAT
CCCCTAGCACCAAGGAGCGAGGGGACGCTTTCTCCTGCTGCCGCCGCCGT
TGCTGCCGCCACCGCTACCGCCGCCTCCGGCGGAGCTGGAAGCTTATGTC
CCACATGTCAGCAGGATGCCGTGTCGATGCGGCTTCGCATGCAGCAAGCG
GATGTCTTGAGGGCGATGCTCGAAACGGACTGCCGAGAAAAAGAGAGAGA
GATTCTGCGGCTACGGGCGGAGCTTCGAAAAACTCGTGCGCCAGGGACGG
CTGCCATCACCGGCGATGCGGAGGACGGCAGCGGCGGCGGTGGCGGCGGC
GGCGGCTTGCGCTCGACCTTGCGATTATCGTGGCTCTGGCGATCACGACC
GACAAGCAGGCTAAGCTCCATCTCTTTGCCACAAACTGTGTAA
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