mRNA_P-wetherbeei_contig12622.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12622.1.1
Unique NamemRNA_P-wetherbeei_contig12622.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: A0A6N7H3V5_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H3V5_9HYPH)

HSP 1 Score: 77.8 bits (190), Expect = 6.080e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDR 267
            KA+SAV AAA  A  +  L G S +V ASAP    K DRLDIR  +P C +QAWPYYDA+CL+   QP  Q +  RV++TDR
Sbjct:    3 KALSAVAAAAFGAAVVLALPGFSPEVEASAPPPVVKSDRLDIRPAAPTCSEQAWPYYDASCLRSA-QPNGQPRTFRVVTTDR 83          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: UPI0004678088 (hypothetical protein n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI0004678088)

HSP 1 Score: 76.6 bits (187), Expect = 1.690e-16
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA+ AV AAA +A  +T L G + QV AS P    KGDRLDIR + PDC QQAWP ++AACL+     ++  +A R++S DRT
Sbjct:    3 KALFAVAAAAFIAAALTALPGFAPQVEASVPQALAKGDRLDIRPIGPDCSQQAWPNFEAACLRTAGSKLAVRQA-RLVSADRT 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: A0A525IG87_BRASZ (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IG87_BRASZ)

HSP 1 Score: 76.6 bits (187), Expect = 1.740e-16
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA++AV  AALVA  +T+L G + QV AS P    KGDRLDIR V  DC QQAWP+++A+CL+      +  +  R+++ DRT
Sbjct:    3 KALTAVAIAALVAAALTVLPGFAPQVEASVPHALAKGDRLDIRPVGRDCSQQAWPHFEASCLRVAGSKTATIREARLVTADRT 85          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: A0A1B1UH12_9BRAD (Uncharacterized protein n=17 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UH12_9BRAD)

HSP 1 Score: 76.3 bits (186), Expect = 2.400e-16
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA SA+ AAA +A  +T+L G + QV AS P    KGDRLDIR V  DC QQAWP ++A+CL+      S  K  R+++ DRT
Sbjct:    3 KAFSAIAAAAFIAAALTVLPGFAPQVEASVPQALAKGDRLDIRTVGKDCSQQAWPNFEASCLR-AADSKSMVKEARLVTADRT 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: A0A7Y4GWD1_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A7Y4GWD1_9BRAD)

HSP 1 Score: 76.3 bits (186), Expect = 2.400e-16
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA SA+ AAA +A  +TIL G + QV AS P    KGDRLDIR V  DC QQAWP ++A+CL+      S  K  R+++ DRT
Sbjct:    3 KAFSAIAAAAFIAAALTILPGFAPQVEASVPQALAKGDRLDIRTVGKDCSQQAWPNFEASCLRTAGS-RSMVKEARLVTADRT 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: UPI00048302AC (hypothetical protein n=1 Tax=Bradyrhizobium sp. Ec3.3 TaxID=189753 RepID=UPI00048302AC)

HSP 1 Score: 74.7 bits (182), Expect = 9.720e-16
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA+SA+  AA VA  +T+L G +  V AS P    KGDRLDIR V  DC QQAWP ++A+CL+ R    +  + VR+++ DRT
Sbjct:    3 KALSAIAVAACVAAALTVLPGFAPTVEASVPQPLAKGDRLDIRVVGKDCSQQAWPNFEASCLR-RADTKANVREVRLVTADRT 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: UPI0017AF9873 (Uncharacterized protein n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI0017AF9873)

HSP 1 Score: 72.8 bits (177), Expect = 5.580e-15
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDR 267
            KA+SA+  AA +A  +T+L G + QV AS P+   KGDRLDIR V  DC QQAWP ++A+CL+      +  +  R+++ +R
Sbjct:    3 KALSAIAIAAFIAAALTVLPGFAPQVEASVPVALAKGDRLDIRPVGRDCSQQAWPNFEASCLRSAATRSATIREARLVTAER 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: UPI001BAC5A8D (hypothetical protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAC5A8D)

HSP 1 Score: 72.8 bits (177), Expect = 5.580e-15
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KA+SA+  AA VAG +T+L G + QV AS P    KGDRLDIR    DC QQAWP ++A+CL+      S  + VR+++ +RT
Sbjct:    3 KALSAIAIAAFVAGALTVLPGFAPQVEASTPQPLAKGDRLDIRTAGKDCSQQAWPNFEASCLRTVGSN-STVREVRLVTANRT 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: A0A257KW35_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A257KW35_9BRAD)

HSP 1 Score: 72.4 bits (176), Expect = 7.920e-15
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDR 267
            KA+SAV  AA +A  +T+L G + +V AS P+   K DRLD++AV   C +QAWP ++AACL++    +     VRV++TDR
Sbjct:    3 KALSAVAIAAFIAAAVTVLPGFAPRVEASVPVALAKADRLDVKAVGRTCSEQAWPNFEAACLRNAATRVINISEVRVVTTDR 84          
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Match: UPI001BA4A07E (hypothetical protein n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA4A07E)

HSP 1 Score: 72.4 bits (176), Expect = 7.920e-15
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   22 KAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIRAVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT 270
            KAISAV  AA +A  +T+L G + QV AS P    K DRLDIR V  DC QQAWP ++A+CL+      S  +  R+++ DRT
Sbjct:    3 KAISAVAVAAFIAAALTVLPGFAPQVEASTPQPLAKADRLDIRVVGKDCSQQAWPNFEASCLRTAGSK-STVREARLVTADRT 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12622.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7H3V5_9HYPH6.080e-1753.66Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI00046780881.690e-1650.60hypothetical protein n=1 Tax=Bradyrhizobium sp. AR... [more]
A0A525IG87_BRASZ1.740e-1648.19Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A1B1UH12_9BRAD2.400e-1649.40Uncharacterized protein n=17 Tax=Bradyrhizobium Ta... [more]
A0A7Y4GWD1_9BRAD2.400e-1650.60Uncharacterized protein n=2 Tax=Bradyrhizobium Tax... [more]
UPI00048302AC9.720e-1648.19hypothetical protein n=1 Tax=Bradyrhizobium sp. Ec... [more]
UPI0017AF98735.580e-1543.90Uncharacterized protein n=1 Tax=Rhodopseudomonas s... [more]
UPI001BAC5A8D5.580e-1548.19hypothetical protein n=1 Tax=Bradyrhizobium lablab... [more]
A0A257KW35_9BRAD7.920e-1545.12Uncharacterized protein n=2 Tax=Bradyrhizobiaceae ... [more]
UPI001BA4A07E7.920e-1548.19hypothetical protein n=1 Tax=Bradyrhizobium jicama... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12622contigP-wetherbeei_contig12622:278..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1040989.AWZU01000003_gene6898
Model size270
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorychloroplast
Exons1
Evalue2.77e-17
EggNOG OGs2B8MF@1|root,321WS@2|Bacteria,1N4A0@1224|Proteobacteria,2UCWJ@28211|Alphaproteobacteria,3K02W@41294|Bradyrhizobiaceae
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.0278587-CDS-P-wetherbeei_contig12622:277..5471683185955.0278587-CDS-P-wetherbeei_contig12622:277..547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12622 278..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12622.1.1prot_P-wetherbeei_contig12622.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12622 278..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12622.1.1

>prot_P-wetherbeei_contig12622.1.1 ID=prot_P-wetherbeei_contig12622.1.1|Name=mRNA_P-wetherbeei_contig12622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MVLKSSSKAISAVVAAALVAGTMTILSGSSGQVSASAPLNSGKGDRLDIR
AVSPDCKQQAWPYYDAACLKDRRQPMSQAKAVRVISTDRT
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mRNA from alignment at P-wetherbeei_contig12622:278..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12622.1.1 ID=mRNA_P-wetherbeei_contig12622.1.1|Name=mRNA_P-wetherbeei_contig12622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig12622:278..547+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTTGAAGAGTTCATCCAAGGCTATTTCCGCTGTCGTGGCCGCCGC GCTGGTCGCAGGCACCATGACCATCCTTTCCGGCAGCAGCGGCCAGGTCT CGGCCAGCGCCCCGCTCAACAGCGGCAAAGGCGACCGACTCGACATCCGC GCGGTGAGCCCGGATTGCAAGCAGCAGGCTTGGCCCTATTACGACGCCGC CTGCCTCAAAGACCGCCGCCAGCCGATGAGCCAGGCCAAGGCGGTGCGGG TCATCAGCACCGACCGGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12622:278..547+

>mRNA_P-wetherbeei_contig12622.1.1 ID=mRNA_P-wetherbeei_contig12622.1.1|Name=mRNA_P-wetherbeei_contig12622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig12622:278..547+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTTGAAGAGTTCATCCAAGGCTATTTCCGCTGTCGTGGCCGCCGC
GCTGGTCGCAGGCACCATGACCATCCTTTCCGGCAGCAGCGGCCAGGTCT
CGGCCAGCGCCCCGCTCAACAGCGGCAAAGGCGACCGACTCGACATCCGC
GCGGTGAGCCCGGATTGCAAGCAGCAGGCTTGGCCCTATTACGACGCCGC
CTGCCTCAAAGACCGCCGCCAGCCGATGAGCCAGGCCAAGGCGGTGCGGG
TCATCAGCACCGACCGGACC
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