mRNA_P-wetherbeei_contig12591.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12591.1.1
Unique NamemRNA_P-wetherbeei_contig12591.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12591.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12591contigP-wetherbeei_contig12591:88..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size931
Hectar predicted targeting categoryother localisation
Exons1
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.9079037-CDS-P-wetherbeei_contig12591:87..8341683185953.9079037-CDS-P-wetherbeei_contig12591:87..834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12591 88..834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.9181821-UTR-P-wetherbeei_contig12591:834..10161683185953.9181821-UTR-P-wetherbeei_contig12591:834..1016Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12591 835..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12591.1.1prot_P-wetherbeei_contig12591.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12591 88..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12591.1.1

>prot_P-wetherbeei_contig12591.1.1 ID=prot_P-wetherbeei_contig12591.1.1|Name=mRNA_P-wetherbeei_contig12591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=249bp
ASSTSSSSSPAAPAEAAAPTAVLYPVPEAEPPGVDSPGWSKRLAVQSLAR
LSRHLPCLRSLWLDYGELRDGDARLLSSWLAKSAGRPFAALPVGDKEDDA
WGGAGSDEGGGGGNGRCGGIRDQVPPSRLWLWGCPPMAGEAIAAAATAAG
GLAVWDSGGGRGSRARDGGGTSCRSCGVAQSGGSKRSDGGRGDGAGGGWR
DAAKVVAAMRAAALQQDEGSCDWARIRLGRFVPAGNCPAALGREMWAA*
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mRNA from alignment at P-wetherbeei_contig12591:88..1016+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12591.1.1 ID=mRNA_P-wetherbeei_contig12591.1.1|Name=mRNA_P-wetherbeei_contig12591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=929bp|location=Sequence derived from alignment at P-wetherbeei_contig12591:88..1016+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTCCTCCACCTCTTCCTCTTCTTCGCCCGCGGCGCCGGCGGAAGCGGC
GGCGCCGACAGCCGTGCTTTATCCGGTTCCAGAAGCGGAGCCGCCGGGCG
TGGATTCGCCCGGGTGGTCAAAAAGACTGGCGGTCCAGAGCCTGGCCCGC
CTCTCGCGCCACCTGCCGTGCCTGCGGAGCCTGTGGCTGGACTATGGAGA
GCTGCGGGACGGGGACGCGCGCCTGTTGTCGTCATGGCTCGCGAAATCAG
CCGGCCGCCCCTTCGCCGCGCTGCCGGTGGGGGACAAGGAAGACGATGCG
TGGGGCGGCGCCGGCAGCGACGAAGGCGGCGGCGGGGGTAATGGCCGCTG
TGGTGGCATCAGGGACCAGGTCCCGCCGAGCCGGCTGTGGCTGTGGGGTT
GCCCCCCAATGGCCGGCGAAGCCATTGCGGCGGCGGCCACGGCGGCCGGC
GGTCTCGCCGTTTGGGACAGCGGAGGTGGCCGCGGCAGCCGCGCCCGTGA
CGGCGGTGGCACGAGTTGCAGGAGTTGTGGTGTCGCCCAGAGCGGCGGCA
GCAAACGCAGCGATGGGGGCAGGGGCGATGGTGCTGGCGGCGGGTGGAGG
GATGCGGCGAAAGTGGTCGCCGCGATGAGAGCTGCGGCGTTGCAGCAAGA
TGAGGGAAGCTGCGACTGGGCACGCATCCGGCTCGGGCGCTTCGTGCCGG
CAGGAAACTGTCCCGCGGCACTGGGAAGGGAGATGTGGGCTGCGTAAGAC
CGGCGCTTGCTCTAGCTGTAAGGCGTCTTATGTAAGCGCGCTCTAAATTG
CCTGTTGTGGGGTGAAATAGAAGGGGCGTGCTAACCGGGAGGGCGAAGGA
GCTGTCGTAGTGGCAAGGGACTTCTCACTTCCTCGGCAAGTTGCGCCGTG
CCCATGCCGTGAAAAATACAAAACCGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12591:88..1016+

>mRNA_P-wetherbeei_contig12591.1.1 ID=mRNA_P-wetherbeei_contig12591.1.1|Name=mRNA_P-wetherbeei_contig12591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig12591:88..1016+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTCCTCCACCTCTTCCTCTTCTTCGCCCGCGGCGCCGGCGGAAGCGGC
GGCGCCGACAGCCGTGCTTTATCCGGTTCCAGAAGCGGAGCCGCCGGGCG
TGGATTCGCCCGGGTGGTCAAAAAGACTGGCGGTCCAGAGCCTGGCCCGC
CTCTCGCGCCACCTGCCGTGCCTGCGGAGCCTGTGGCTGGACTATGGAGA
GCTGCGGGACGGGGACGCGCGCCTGTTGTCGTCATGGCTCGCGAAATCAG
CCGGCCGCCCCTTCGCCGCGCTGCCGGTGGGGGACAAGGAAGACGATGCG
TGGGGCGGCGCCGGCAGCGACGAAGGCGGCGGCGGGGGTAATGGCCGCTG
TGGTGGCATCAGGGACCAGGTCCCGCCGAGCCGGCTGTGGCTGTGGGGTT
GCCCCCCAATGGCCGGCGAAGCCATTGCGGCGGCGGCCACGGCGGCCGGC
GGTCTCGCCGTTTGGGACAGCGGAGGTGGCCGCGGCAGCCGCGCCCGTGA
CGGCGGTGGCACGAGTTGCAGGAGTTGTGGTGTCGCCCAGAGCGGCGGCA
GCAAACGCAGCGATGGGGGCAGGGGCGATGGTGCTGGCGGCGGGTGGAGG
GATGCGGCGAAAGTGGTCGCCGCGATGAGAGCTGCGGCGTTGCAGCAAGA
TGAGGGAAGCTGCGACTGGGCACGCATCCGGCTCGGGCGCTTCGTGCCGG
CAGGAAACTGTCCCGCGGCACTGGGAAGGGAGATGTGGGCTGCGTAA
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