mRNA_P-wetherbeei_contig12469.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12469.1.1
Unique NamemRNA_P-wetherbeei_contig12469.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12469contigP-wetherbeei_contig12469:3..776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size668
Hectar predicted targeting categorysignal peptide
Exons2
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.7284663-CDS-P-wetherbeei_contig12469:2..441683185949.7284663-CDS-P-wetherbeei_contig12469:2..44Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12469 3..44 +
1683185949.7365155-CDS-P-wetherbeei_contig12469:151..7751683185949.7365155-CDS-P-wetherbeei_contig12469:151..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12469 152..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12469.1.1prot_P-wetherbeei_contig12469.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12469 3..775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12469.1.1

>prot_P-wetherbeei_contig12469.1.1 ID=prot_P-wetherbeei_contig12469.1.1|Name=mRNA_P-wetherbeei_contig12469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=222bp
PGALSALVLAAAAVAAAASSADMSVRPRSEPAEQTCFYHWEATRIGGGSG
GSSGSAAVASASPPAGAAAAAFLPSPSSTATAAAPLLLLVAGPVSGVSGV
AWDDDGERCAACCDGRIYIYRAVRVPLPPPPPSATAAGSRGHAAQPAPAL
PPLPLPPPVALTLLGAVAGGAGAEADDPVESMAWWHGTLFFCTGAAAYAV
FCRGGGIERVRLAAHDADPPTA
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mRNA from alignment at P-wetherbeei_contig12469:3..776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12469.1.1 ID=mRNA_P-wetherbeei_contig12469.1.1|Name=mRNA_P-wetherbeei_contig12469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig12469:3..776+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGGGGCTTTGTCGGCTTTGGTGCTGGCGGCGGCGGCGGTGGCGGCAGC
GATGTCCCCGGATCGCCAAAAGGATACGCGTCGCCTCCGATGCTATCAGG
CGATCCTTTCGAACCGCAGGCGGCCGCGGCGGCGGCGGCCGCCGCCGCCG
CGGCCGCCGCATCCTCCGCCGACATGAGTGTCCGGCCGCGCTCTGAGCCG
GCCGAGCAGACGTGTTTTTACCACTGGGAAGCCACCCGAATTGGTGGCGG
CAGCGGCGGCTCCAGCGGCAGCGCGGCGGTGGCGTCGGCGTCGCCGCCGG
CGGGAGCGGCTGCCGCGGCGTTTTTGCCGTCTCCTTCGTCCACGGCGACC
GCGGCAGCGCCGTTGCTGTTGCTGGTAGCGGGGCCTGTGAGCGGGGTGTC
AGGGGTGGCTTGGGACGACGATGGCGAGCGGTGCGCCGCGTGCTGCGACG
GCCGCATCTATATTTACCGGGCCGTGCGGGTACCGTTGCCGCCGCCGCCG
CCGTCGGCGACGGCGGCGGGGTCGCGAGGCCATGCCGCCCAACCAGCCCC
AGCACTGCCACCGCTACCACTGCCGCCACCGGTGGCGCTGACGCTGTTGG
GCGCGGTGGCTGGCGGCGCCGGCGCGGAGGCGGACGATCCCGTAGAAAGC
ATGGCGTGGTGGCACGGCACGCTGTTCTTCTGCACCGGTGCGGCTGCGTA
CGCCGTCTTTTGCCGGGGCGGGGGCATTGAACGAGTGCGGCTGGCAGCGC
ACGACGCCGACCCGCCGACGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12469:3..776+

>mRNA_P-wetherbeei_contig12469.1.1 ID=mRNA_P-wetherbeei_contig12469.1.1|Name=mRNA_P-wetherbeei_contig12469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig12469:3..776+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGGGGCTTTGTCGGCTTTGGTGCTGGCGGCGGCGGCGGTGGCGGCCGC
CGCATCCTCCGCCGACATGAGTGTCCGGCCGCGCTCTGAGCCGGCCGAGC
AGACGTGTTTTTACCACTGGGAAGCCACCCGAATTGGTGGCGGCAGCGGC
GGCTCCAGCGGCAGCGCGGCGGTGGCGTCGGCGTCGCCGCCGGCGGGAGC
GGCTGCCGCGGCGTTTTTGCCGTCTCCTTCGTCCACGGCGACCGCGGCAG
CGCCGTTGCTGTTGCTGGTAGCGGGGCCTGTGAGCGGGGTGTCAGGGGTG
GCTTGGGACGACGATGGCGAGCGGTGCGCCGCGTGCTGCGACGGCCGCAT
CTATATTTACCGGGCCGTGCGGGTACCGTTGCCGCCGCCGCCGCCGTCGG
CGACGGCGGCGGGGTCGCGAGGCCATGCCGCCCAACCAGCCCCAGCACTG
CCACCGCTACCACTGCCGCCACCGGTGGCGCTGACGCTGTTGGGCGCGGT
GGCTGGCGGCGCCGGCGCGGAGGCGGACGATCCCGTAGAAAGCATGGCGT
GGTGGCACGGCACGCTGTTCTTCTGCACCGGTGCGGCTGCGTACGCCGTC
TTTTGCCGGGGCGGGGGCATTGAACGAGTGCGGCTGGCAGCGCACGACGC
CGACCCGCCGACGGCG
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