mRNA_P-wetherbeei_contig12442.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12442.1.1
Unique NamemRNA_P-wetherbeei_contig12442.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: D7G2J7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.120e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDEDPP 309
            +ILTEENV +VL EAK EL TLFGN           N AVGITGD + V +DGP+VVVRL+GRFWH +  VLAR+ ++++ RIPEC +V + DPSQL D DPP
Sbjct:    6 LILTEENVVAVLAEAKRELSTLFGNNA--------ENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPP 100          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A836CAH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.280e-31
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDEDP 306
            ++LTEENVE+VL++ + ELG++FG         L  NR VGITG V  VE++GPTVVV+L GRFWH R  VL RIAS+I+ RIPEC EV   DPSQL+DEDP
Sbjct:   67 LVLTEENVEAVLEDCRTELGSVFGY--------LPENRGVGITGTVDFVELEGPTVVVKLGGRFWHERRLVLDRIASFIQGRIPECLEVVPSDPSQLIDEDP 160          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A6H5JIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.530e-31
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDEDPP 309
            +ILTEENV +VL EAK EL TLFGN           N AVGITGD + V +DGP+VVVRL+GRFWH +  VLAR+ ++++ RIPEC +V + DPSQL D DPP
Sbjct:   98 LILTEENVVAVLAEAKRELSTLFGNNA--------ENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPP 192          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A7S3T494_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T494_EMIHU)

HSP 1 Score: 113 bits (282), Expect = 1.890e-29
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLD 297
            ++LTEENV++VL EA+ +LGT+FG+           + AVGITG   LVE+DGPTVV+RLSGRFWHARA VL R+ +++ +RIPEC  V + DPSQL D
Sbjct:   71 LVLTEENVQAVLDEAERDLGTMFGSNP--------ESAAVGITGRADLVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLED 161          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A7S3EC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC75_9RHOD)

HSP 1 Score: 108 bits (271), Expect = 3.170e-28
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    7 LTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDED 303
            L+EEN+  VL+EAK ELGTLFGN           NR VGITGDV L E+DG TVV+RL+GRFWH R+ V+AR++ Y++ RIPE  +V + D SQL D D
Sbjct:   50 LSEENINIVLEEAKIELGTLFGNSE--------ENREVGITGDVSLAELDGVTVVLRLTGRFWHKRSDVVARVSQYLQNRIPEVCDVMIEDESQLDDAD 140          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A7S0DXW5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DXW5_9CRYP)

HSP 1 Score: 108 bits (271), Expect = 7.550e-28
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    7 LTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLD 297
            LTEENV++ L+EAK  LGT+FGN +         NR +GITGDV+L+ +DGP   VRL GRFWH RA VLAR+ +Y++ RIPE  EV++ DP QL D
Sbjct:   84 LTEENVQNALEEAKEILGTMFGNSQ--------ENREIGITGDVKLINLDGPFATVRLVGRFWHKRADVLARVENYLKTRIPEIIEVSIEDPMQLDD 172          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: L1JDA8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDA8_GUITC)

HSP 1 Score: 106 bits (265), Expect = 4.540e-27
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    7 LTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLD 297
            LTE+NV+  L+E+K  LGT+FGN +         NR +GITGDVQLV +DGP   VRL GRFWH R+ VLAR+ +Y++ R+PE  EV++ DP QL D
Sbjct:   73 LTEDNVQQALEESKEILGTMFGNSQ--------ENREIGITGDVQLVNLDGPFASVRLVGRFWHKRSDVLARVENYVKTRVPEIVEVSIEDPMQLDD 161          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A0G4GKJ3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKJ3_VITBC)

HSP 1 Score: 102 bits (255), Expect = 1.470e-25
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLD 297
            +ILTEENVE  L+  + EL  LFGN           NR+VGITGDV+   +DGP V++RL GRFWH+RA VL R+ +++  RIPEC  V + DP+ L D
Sbjct:   76 LILTEENVEKTLEACRQELSALFGNSE--------ENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATVLERVTAFLLNRIPECLGVEIEDPAMLDD 166          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A2V3IKM4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKM4_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 5.930e-25
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLD 297
            ++LTEE+V   L E K +LG++FGN +         NR VGITGDV L  +DGP VV+RL GRFWH R  VLAR+++Y+ +RIPE  ++ + D  QL D
Sbjct:   57 LVLTEESVNQALDEVKVKLGSIFGNSQ--------ENRDVGITGDVALSSLDGPVVVLRLQGRFWHKRTDVLARVSAYLLERIPEICDIEIEDQRQLED 147          
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Match: A0A1Z5JYD7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYD7_FISSO)

HSP 1 Score: 100 bits (248), Expect = 3.360e-24
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    7 LTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVEVDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDE 300
            L+EENV  VL   + E+GTLFG            NR VGITG V LV++DGPT+++RL GRFWH R  VL R+A+Y++QRIPE  +V V DP QL +E
Sbjct:  103 LSEENVLGVLAACRQEVGTLFGYTA--------ENRGVGITGGVDLVDLDGPTIILRLKGRFWHERKTVLERVANYLQQRIPEIIDVIVEDPWQLTNE 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12442.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J7_ECTSI1.120e-3258.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAH8_9STRA1.280e-3159.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JIN5_9PHAE1.530e-3158.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3T494_EMIHU1.890e-2956.57Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S3EC75_9RHOD3.170e-2856.57Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0DXW5_9CRYP7.550e-2855.67Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JDA8_GUITC4.540e-2753.61Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A0G4GKJ3_VITBC1.470e-2550.51Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A2V3IKM4_9FLOR5.930e-2549.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1Z5JYD7_FISSO3.360e-2453.06Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12442contigP-wetherbeei_contig12442:116..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2J7
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.84e-33
EggNOG OGs2BCYA@1|root,2S115@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002490.1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.0305405-CDS-P-wetherbeei_contig12442:115..2231683185949.0305405-CDS-P-wetherbeei_contig12442:115..223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12442 116..223 +
1683185949.047817-CDS-P-wetherbeei_contig12442:570..7261683185949.047817-CDS-P-wetherbeei_contig12442:570..726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12442 571..726 +
1683185949.065939-CDS-P-wetherbeei_contig12442:974..10281683185949.065939-CDS-P-wetherbeei_contig12442:974..1028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12442 975..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12442.1.1prot_P-wetherbeei_contig12442.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12442 116..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12442.1.1

>prot_P-wetherbeei_contig12442.1.1 ID=prot_P-wetherbeei_contig12442.1.1|Name=mRNA_P-wetherbeei_contig12442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MILTEENVESVLQEAKAELGTLFGNRRADFPSKLFSNRAVGITGDVQLVE
VDGPTVVVRLSGRFWHARAGVLARIASYIRQRIPECTEVNVGDPSQLLDE
DPPSR*
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mRNA from alignment at P-wetherbeei_contig12442:116..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12442.1.1 ID=mRNA_P-wetherbeei_contig12442.1.1|Name=mRNA_P-wetherbeei_contig12442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=913bp|location=Sequence derived from alignment at P-wetherbeei_contig12442:116..1028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTTGACTGAGGAAAATGTGGAATCTGTCCTCCAGGAGGCAAAGGC GGAGCTGGGCACGCTTTTTGGAAACAGGCGAGCAGATTTTCCATCAAAGC TTTTCTCAGTTCGTGTGAATTGCTGCCTTTTGTTTCAAATTCGTACGAAA ACCGTCCTCCTATTCCAATGCAAAGTATCCACCACTTCTCCTCCACATGT ATGGCTCTGCTACAGCCGTGTGTTGGTTTGGTGTTCTTTCTTTCTTTCTC AGAGTAGGAGAAATGCAGAGGTGCTCATATTTCACATGGACGCATTTGCC ATGGTCGCCGCTTACCGCCGCCGCGTACCACCGGCACCACTCACCGGCGC TCTCTTCCTCCCCGGCCTTGGCCACATACCCTCAGTGCTGCTCTCTCGCA CCACTTTGCTGCCGCCGCGTCCACCACCGCCTTCTCCGGCGGCTGCAGCG CCGAGAACCGCGCCGTGGGTATCACGGGCGACGTACAGCTCGTTGAGGTG GATGGGCCGACGGTCGTCGTGCGCCTGTCGGGGCGCTTCTGGCATGCCCG GGCCGGCGTCCTCGCGCGCATCGCTTCCTATATCCGGCAGCGCATCCCTG AGTGCACCGAGGTGAGTCGGATTTTATCGCTCCATCCAAGCTACTTTGGA GGTGCTGGGATTGCTTTTGCCATGATCTGTTCCAAGTCTTTCCCTCGCGA GCACGAATGGGGTTGGTAAAATTTAGTTAGTTGCAATGGAATTGGTAACC GGTGAACTGCCGTGCTTTACCTTTCTCTCTGCGCAATTGCACTGCTGAGG CGTCTTTCTCCAGGGCTTCCCATTTCCGCATTGCCACGCCCTACACGACC TTCGTGCAGGTCAATGTGGGAGACCCGTCGCAGCTCCTGGACGAAGACCC GCCTTCTAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12442:116..1028+

>mRNA_P-wetherbeei_contig12442.1.1 ID=mRNA_P-wetherbeei_contig12442.1.1|Name=mRNA_P-wetherbeei_contig12442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig12442:116..1028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTTGACTGAGGAAAATGTGGAATCTGTCCTCCAGGAGGCAAAGGC
GGAGCTGGGCACGCTTTTTGGAAACAGGCGAGCAGATTTTCCATCAAAGC
TTTTCTCAAACCGCGCCGTGGGTATCACGGGCGACGTACAGCTCGTTGAG
GTGGATGGGCCGACGGTCGTCGTGCGCCTGTCGGGGCGCTTCTGGCATGC
CCGGGCCGGCGTCCTCGCGCGCATCGCTTCCTATATCCGGCAGCGCATCC
CTGAGTGCACCGAGGTCAATGTGGGAGACCCGTCGCAGCTCCTGGACGAA
GACCCGCCTTCTAGGTAG
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