mRNA_P-wetherbeei_contig1244.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1244.5.1
Unique NamemRNA_P-wetherbeei_contig1244.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1244.5.1 vs. uniprot
Match: B1ZXJ2_OPITP (Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1) TaxID=452637 RepID=B1ZXJ2_OPITP)

HSP 1 Score: 362 bits (930), Expect = 4.530e-122
Identity = 183/325 (56.31%), Postives = 237/325 (72.92%), Query Frame = 1 
Query:    1 MDFDDPTLLRFLGPQLRDHGAQTELDAGLWTLFAIPAADTEAHAIAHALLATATFAHDSGLTEDDRWMLHYVDTANRPAARAWLDDTSKLLAGEIRPPAPAHRALAAELITSPKPHRLAQDLAALHTRGELGAGLFRKPADVRALLDRLHQCEPLFFAAFLTLLTNHLVDMLVLHRQLLPEDIALKNEIVRGGLSRDPFLQSRQDAAGEIRNFLLLFQLINPIDQQKNTTIANPYAVHLEVVVAGDEVTAPIDGIAVALTRENFLAALRSIRRNLYRGEEFRSFDTQAPWMNEQIAYPFRFIKQRIESRPDLSTMDALYLLERAV 975
            M  D  +LLRFL PQ+RD+GA+ EL++G W +FA+PA+D  A+  A  LL  A FAHD GL+ DD+WML+YVD+ANR  AR WL DT  +  GEIRP AP ++A  AEL  SPKPHR+A+ L  LH RGE+ AG+ R    VRA LDRLHQ EPLFF AF +LLT+HLVDM+VL +QL+ ED+ LKNEIV G LS DP+LQ RQD A  I + L+ F++INP+DQQKNT + NPYA +L++     ++   +DG    + R +FL+A+ SIRR+LYRGEEFR   T APWM + +AYPFRFI+Q+++SR DL  +DALY+ ERA+
Sbjct:    1 MVLDTTSLLRFLEPQVRDYGAEVELESGFWIVFAVPASDHSANEHARTLLQDAAFAHDCGLSSDDQWMLYYVDSANRARARHWLRDTVAISRGEIRPTAPEYQAWVAELAESPKPHRIARQLIDLHARGEVSAGVVRDARTVRACLDRLHQREPLFFHAFHSLLTHHLVDMVVLLQQLVAEDVILKNEIVAGSLSHDPWLQKRQDWAAGIHHTLVRFRVINPLDQQKNTVLGNPYAAYLDLHGIAGQLVLVVDGFTATVPRAHFLSAIHSIRRSLYRGEEFRELGTHAPWMTDSMAYPFRFIRQKLDSRRDLPPIDALYMFERAL 325
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BLAST of mRNA_P-wetherbeei_contig1244.5.1 vs. uniprot
Match: UPI0019ADE846 (Uncharacterized protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019ADE846)

HSP 1 Score: 343 bits (879), Expect = 2.460e-114
Identity = 180/319 (56.43%), Postives = 226/319 (70.85%), Query Frame = 1 
Query:   19 TLLRFLGPQLRDHGAQTELDAGLWTLFAIPAADTEAHAIAHALLATATFAHDSGLTEDDRWMLHYVDTANRPAARAWLDDTSKLLAGEIRPPAPAHRALAAELITSPKPHRLAQDLAALHTRGELGAGLFRKPADVRALLDRLHQCEPLFFAAFLTLLTNHLVDMLVLHRQLLPEDIALKNEIVRGGLSRDPFLQSRQDAAGEIRNFLLLFQLINPIDQQKNTTIANPYAVHLEVVVAGDEVTAPIDGIAVALTRENFLAALRSIRRNLYRGEEFRSFDTQAPWMNEQIAYPFRFIKQRIESRPDLSTMDALYLLERAV 975
            TL RFL PQ+RD GAQ E+DAGLW +F + +AD   + +AH+L+ +A F + SG + DD+W L+YV T +R AA  WLDD   L AG IRP AP H AL AEL+ S  PHR A+ L  LH  G + AG+ R P  VRALLDRLH  EPL+FAAF TLLT+HL+D+ VLHRQL+PED+ALKNEIVR GLSRDPFLQSRQDA   IR+ LL F ++N    QKNT I NPYA  L+V  A D + A I+G    +    F+AA+RSIR  +Y+GE F S  + APW++++IA P RFI+QR+   P LST+DALY+LER+V
Sbjct:    7 TLHRFLAPQIRDFGAQVEIDAGLWAVFVVASADAAPNTLAHSLIDSAPFPYKSGPSSDDQWTLYYVTTEHRLAAVHWLDDLVALCAGAIRPAAPEHLALIAELLESTTPHRPARQLGDLHDCGAVTAGIARTPLRVRALLDRLHAREPLYFAAFETLLTHHLIDLAVLHRQLIPEDVALKNEIVRAGLSRDPFLQSRQDATTRIRDLLLRFGVLNATTHQKNTAITNPYAAFLDVARADDHIPATINGELSPIPVSQFIAAIRSIRLAIYQGETFTSGTSAAPWIHQEIAAPCRFIRQRLAGNPALSTLDALYMLERSV 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1244.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B1ZXJ2_OPITP4.530e-12256.31Uncharacterized protein n=1 Tax=Opitutus terrae (s... [more]
UPI0019ADE8462.460e-11456.43Uncharacterized protein n=1 Tax=Undibacterium sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1244contigP-wetherbeei_contig1244:6531..7514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size984
Hectar predicted targeting categoryother localisation
Exons1
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.900522-CDS-P-wetherbeei_contig1244:6530..75141683185948.900522-CDS-P-wetherbeei_contig1244:6530..7514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1244 6531..7514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1244.5.1prot_P-wetherbeei_contig1244.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1244 6531..7514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1244.5.1

>prot_P-wetherbeei_contig1244.5.1 ID=prot_P-wetherbeei_contig1244.5.1|Name=mRNA_P-wetherbeei_contig1244.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=328bp
MDFDDPTLLRFLGPQLRDHGAQTELDAGLWTLFAIPAADTEAHAIAHALL
ATATFAHDSGLTEDDRWMLHYVDTANRPAARAWLDDTSKLLAGEIRPPAP
AHRALAAELITSPKPHRLAQDLAALHTRGELGAGLFRKPADVRALLDRLH
QCEPLFFAAFLTLLTNHLVDMLVLHRQLLPEDIALKNEIVRGGLSRDPFL
QSRQDAAGEIRNFLLLFQLINPIDQQKNTTIANPYAVHLEVVVAGDEVTA
PIDGIAVALTRENFLAALRSIRRNLYRGEEFRSFDTQAPWMNEQIAYPFR
FIKQRIESRPDLSTMDALYLLERAVSG*
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mRNA from alignment at P-wetherbeei_contig1244:6531..7514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1244.5.1 ID=mRNA_P-wetherbeei_contig1244.5.1|Name=mRNA_P-wetherbeei_contig1244.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig1244:6531..7514+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTCGACGACCCCACCCTCCTCCGTTTTCTCGGCCCCCAACTCCG
CGACCACGGCGCCCAAACCGAACTCGACGCCGGCCTCTGGACGCTCTTCG
CCATCCCCGCCGCGGACACCGAGGCCCACGCCATCGCCCACGCGCTCCTC
GCCACCGCGACGTTCGCGCACGACTCCGGTCTGACCGAAGACGATCGGTG
GATGCTCCACTACGTGGATACCGCGAACCGCCCCGCCGCTCGCGCCTGGC
TGGATGACACCAGCAAACTCCTCGCCGGCGAGATTCGCCCGCCCGCGCCC
GCCCACCGTGCCCTCGCCGCCGAACTCATCACGTCCCCCAAGCCCCACCG
CCTCGCCCAAGACCTCGCGGCTCTCCACACCCGCGGCGAACTCGGTGCCG
GCCTTTTCCGCAAACCCGCCGATGTCCGCGCGCTCCTCGACCGCCTGCAC
CAATGCGAGCCGCTGTTCTTCGCCGCGTTCCTCACGCTCCTGACGAACCA
CCTCGTCGACATGCTCGTGCTGCATCGTCAGCTCCTGCCCGAGGACATCG
CCTTGAAAAACGAGATCGTGCGCGGCGGCCTCTCCCGCGATCCGTTCCTG
CAAAGCCGCCAGGATGCCGCCGGCGAAATCCGCAATTTCCTGCTCCTCTT
TCAGCTCATCAATCCGATCGACCAGCAGAAAAACACCACCATCGCCAACC
CCTACGCCGTCCACCTGGAAGTCGTGGTCGCCGGCGATGAAGTCACCGCG
CCCATCGACGGCATCGCCGTCGCCCTAACCCGCGAAAATTTCCTCGCCGC
CCTCCGCTCCATCCGCCGCAACCTCTATCGCGGCGAAGAATTCCGCAGCT
TCGACACCCAGGCTCCGTGGATGAACGAGCAGATCGCCTATCCATTTCGC
TTCATCAAACAGCGCATCGAGTCCCGCCCCGATCTCTCGACCATGGATGC
ACTCTATCTGCTGGAACGCGCGGTGAGCGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1244:6531..7514+

>mRNA_P-wetherbeei_contig1244.5.1 ID=mRNA_P-wetherbeei_contig1244.5.1|Name=mRNA_P-wetherbeei_contig1244.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig1244:6531..7514+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTCGACGACCCCACCCTCCTCCGTTTTCTCGGCCCCCAACTCCG
CGACCACGGCGCCCAAACCGAACTCGACGCCGGCCTCTGGACGCTCTTCG
CCATCCCCGCCGCGGACACCGAGGCCCACGCCATCGCCCACGCGCTCCTC
GCCACCGCGACGTTCGCGCACGACTCCGGTCTGACCGAAGACGATCGGTG
GATGCTCCACTACGTGGATACCGCGAACCGCCCCGCCGCTCGCGCCTGGC
TGGATGACACCAGCAAACTCCTCGCCGGCGAGATTCGCCCGCCCGCGCCC
GCCCACCGTGCCCTCGCCGCCGAACTCATCACGTCCCCCAAGCCCCACCG
CCTCGCCCAAGACCTCGCGGCTCTCCACACCCGCGGCGAACTCGGTGCCG
GCCTTTTCCGCAAACCCGCCGATGTCCGCGCGCTCCTCGACCGCCTGCAC
CAATGCGAGCCGCTGTTCTTCGCCGCGTTCCTCACGCTCCTGACGAACCA
CCTCGTCGACATGCTCGTGCTGCATCGTCAGCTCCTGCCCGAGGACATCG
CCTTGAAAAACGAGATCGTGCGCGGCGGCCTCTCCCGCGATCCGTTCCTG
CAAAGCCGCCAGGATGCCGCCGGCGAAATCCGCAATTTCCTGCTCCTCTT
TCAGCTCATCAATCCGATCGACCAGCAGAAAAACACCACCATCGCCAACC
CCTACGCCGTCCACCTGGAAGTCGTGGTCGCCGGCGATGAAGTCACCGCG
CCCATCGACGGCATCGCCGTCGCCCTAACCCGCGAAAATTTCCTCGCCGC
CCTCCGCTCCATCCGCCGCAACCTCTATCGCGGCGAAGAATTCCGCAGCT
TCGACACCCAGGCTCCGTGGATGAACGAGCAGATCGCCTATCCATTTCGC
TTCATCAAACAGCGCATCGAGTCCCGCCCCGATCTCTCGACCATGGATGC
ACTCTATCTGCTGGAACGCGCGGTGAGCGGCTAG
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