mRNA_P-wetherbeei_contig12383.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12383.2.1
Unique NamemRNA_P-wetherbeei_contig12383.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A351T472_9PROT (FliMN_C domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T472_9PROT)

HSP 1 Score: 115 bits (289), Expect = 2.400e-32
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    4 MKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQSQ 231
            MKAIDSVK+EVSVVLG+A+MPIHQLLKMGRGAVIELE+LQ DPV+++AN R IA+GEIMIQG+ IAVSI DLV S+
Sbjct:    1 MKAIDSVKVEVSVVLGRAVMPIHQLLKMGRGAVIELETLQNDPVMVYANNRRIAKGEIMIQGDGIAVSILDLVNSE 76          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A317E3P8_9PROT (FliMN_C domain-containing protein n=1 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317E3P8_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 5.070e-23
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    4 MKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLV 222
            M A+  V I++SVVLGQ+ MPIHQLLKMGRGAVIEL+S +++PV+I AN +LIARGEI+I GE IAVS+ +L+
Sbjct:    1 MSAVGEVYIDISVVLGQSTMPIHQLLKMGRGAVIELDSRESEPVMILANGKLIARGEIVISGEHIAVSVTELL 73          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A8I1UQL2_9PROT (Flagellar motor switch protein FliN n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1UQL2_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 5.070e-23
Identity = 46/72 (63.89%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   13 IDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQS 228
            ID VK+E+SVVLG++++P+HQLL+MGRGAVIEL S Q DPVL+ AN R +A+GEI+I G+ IAVSI +L+Q+
Sbjct:    5 IDKVKVEISVVLGRSVIPMHQLLRMGRGAVIELNSHQEDPVLVLANDRPVAKGEIVINGDKIAVSITELLQN 76          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A845QC18_9HYPH (Flagellar motor switch protein FliN n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QC18_9HYPH)

HSP 1 Score: 89.4 bits (220), Expect = 8.390e-22
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    4 MKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQ 225
            M AID V++E+SVVLG+A MPIHQLLKMGRGAVIELE+ +++ V + AN + IARGEI++QGE + VSI +++Q
Sbjct:    1 MNAIDKVEVEISVVLGKASMPIHQLLKMGRGAVIELEAHESEEVWLLANNQPIARGEIVVQGEHVGVSITEVLQ 74          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A846N2S6_9PROT (Flagellar motor switch protein FliN/FliY n=1 Tax=Rhizomicrobium palustre TaxID=189966 RepID=A0A846N2S6_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.190e-21
Identity = 45/75 (60.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MMKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQ 225
            M+  I +VK+E+SVVLG++++P+HQLL+MGRGAVIEL++ Q DPVLI AN + IARGEI+IQG+ I VS+ +L++
Sbjct:    1 MLGNISNVKVEISVVLGRSVIPMHQLLRMGRGAVIELDTNQDDPVLILANDKPIARGEIVIQGDKIGVSVLELLR 75          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A177QDN8_9PROT (FliMN_C domain-containing protein n=1 Tax=Rhizomicrobium sp. SCGC AG-212-E05 TaxID=1799655 RepID=A0A177QDN8_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.190e-21
Identity = 43/71 (60.56%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   13 IDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQ 225
            +D+VK+E+SVVLG++++P+HQLL+MGRGAVIEL+S Q DPV I AN + +A+GEI IQG+ IAVS+ +L++
Sbjct:    5 VDNVKVEISVVLGRSVIPMHQLLRMGRGAVIELDSNQDDPVTILANDKPVAKGEIQIQGDKIAVSVVELLR 75          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: UPI001423416E (flagellar motor switch protein FliN n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI001423416E)

HSP 1 Score: 89.0 bits (219), Expect = 1.190e-21
Identity = 43/75 (57.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MMKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQ 225
            M+  + +VK+E+SVVLG++++P+HQLL+MGRGAVIEL++ Q DPVLI AN + +ARGEI+IQG+ I VS+ +L++
Sbjct:    1 MLNNLQNVKVEISVVLGRSVIPMHQLLRMGRGAVIELDASQDDPVLILANDKPVARGEIIIQGDRIGVSVLELLK 75          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A8I1S0I9_9PROT (Flagellar motor switch protein FliN n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1S0I9_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 2.340e-21
Identity = 42/72 (58.33%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   13 IDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQS 228
            +D+VK+ +SVVLG++++P+HQLL+MGRGAVIEL+S Q DPVL+ AN + +A+GEI I G+ IAVS+ DL+++
Sbjct:    5 VDNVKVAISVVLGRSVIPMHQLLRMGRGAVIELDSHQDDPVLVLANDKPVAKGEIQISGDRIAVSVVDLLRN 76          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: A0A317DTK1_9PROT (FliMN_C domain-containing protein n=2 Tax=Zavarzinia compransoris TaxID=1264899 RepID=A0A317DTK1_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 3.410e-21
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    4 MKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLV 222
            M A+  V I++SVVLGQ+ MPIHQLLKMGRGAVIEL++ +++PV+I AN R IARGEI++ G+ IAVS+ +L+
Sbjct:    1 MSAVGEVFIDISVVLGQSTMPIHQLLKMGRGAVIELDAKESEPVMILANGRPIARGEIVLSGDRIAVSVTELL 73          
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Match: X5MNP9_9HYPH (Flagellar motor switch protein FliN n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MNP9_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 1.390e-20
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    4 MKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFANKRLIARGEIMIQGEAIAVSIRDLVQ 225
            M AI+ V +E+SVVLG+A MPIHQLLKMGRGAVIEL++ +T+ V + AN + IARGEI++QG+ + VSI +++Q
Sbjct:    1 MSAIEKVDVEISVVLGKATMPIHQLLKMGRGAVIELDAGETEEVWLLANNQPIARGEIVVQGDHVGVSITEVLQ 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12383.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T472_9PROT2.400e-3278.95FliMN_C domain-containing protein n=1 Tax=Alphapro... [more]
A0A317E3P8_9PROT5.070e-2365.75FliMN_C domain-containing protein n=1 Tax=Zavarzin... [more]
A0A8I1UQL2_9PROT5.070e-2363.89Flagellar motor switch protein FliN n=1 Tax=Alphap... [more]
A0A845QC18_9HYPH8.390e-2262.16Flagellar motor switch protein FliN n=1 Tax=Pyruva... [more]
A0A846N2S6_9PROT1.190e-2160.00Flagellar motor switch protein FliN/FliY n=1 Tax=R... [more]
A0A177QDN8_9PROT1.190e-2160.56FliMN_C domain-containing protein n=1 Tax=Rhizomic... [more]
UPI001423416E1.190e-2157.33flagellar motor switch protein FliN n=1 Tax=Rhizom... [more]
A0A8I1S0I9_9PROT2.340e-2158.33Flagellar motor switch protein FliN n=1 Tax=Alphap... [more]
A0A317DTK1_9PROT3.410e-2161.64FliMN_C domain-containing protein n=2 Tax=Zavarzin... [more]
X5MNP9_9HYPH1.390e-2059.46Flagellar motor switch protein FliN n=1 Tax=Candid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12383contigP-wetherbeei_contig12383:774..1007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_2892
Preferred nameQU41_23035
PFAMsFliMN_C
Model size234
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02417
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02030,ko02040,map02030,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.06e-20
EggNOG OGsCOG1886@1|root,COG1886@2|Bacteria,1N1JC@1224|Proteobacteria,2UC3S@28211|Alphaproteobacteria,4BSVP@82117|unclassified Alphaproteobacteria
DescriptionType III flagellar switch regulator (C-ring) FliN C-term
Cds size234
COG categoryNU
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.2328343-CDS-P-wetherbeei_contig12383:773..10071683185947.2328343-CDS-P-wetherbeei_contig12383:773..1007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12383 774..1007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12383.2.1prot_P-wetherbeei_contig12383.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12383 774..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12383.2.1

>prot_P-wetherbeei_contig12383.2.1 ID=prot_P-wetherbeei_contig12383.2.1|Name=mRNA_P-wetherbeei_contig12383.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MMKAIDSVKIEVSVVLGQAIMPIHQLLKMGRGAVIELESLQTDPVLIFAN
KRLIARGEIMIQGEAIAVSIRDLVQSQ*
back to top

mRNA from alignment at P-wetherbeei_contig12383:774..1007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12383.2.1 ID=mRNA_P-wetherbeei_contig12383.2.1|Name=mRNA_P-wetherbeei_contig12383.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig12383:774..1007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAAGGCAATAGACAGCGTTAAAATCGAAGTTTCCGTGGTGCTTGG CCAGGCTATTATGCCCATTCATCAATTGCTTAAGATGGGGCGTGGCGCGG TGATCGAGCTGGAATCCCTGCAAACCGATCCTGTTCTGATCTTTGCCAAC AAGCGCTTGATTGCGCGGGGGGAAATCATGATTCAGGGCGAAGCTATTGC CGTTTCAATCCGCGACCTGGTGCAGTCGCAATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12383:774..1007+

>mRNA_P-wetherbeei_contig12383.2.1 ID=mRNA_P-wetherbeei_contig12383.2.1|Name=mRNA_P-wetherbeei_contig12383.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig12383:774..1007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAAGGCAATAGACAGCGTTAAAATCGAAGTTTCCGTGGTGCTTGG
CCAGGCTATTATGCCCATTCATCAATTGCTTAAGATGGGGCGTGGCGCGG
TGATCGAGCTGGAATCCCTGCAAACCGATCCTGTTCTGATCTTTGCCAAC
AAGCGCTTGATTGCGCGGGGGGAAATCATGATTCAGGGCGAAGCTATTGC
CGTTTCAATCCGCGACCTGGTGCAGTCGCAATAA
back to top