mRNA_P-wetherbeei_contig12304.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12304.1.1
Unique NamemRNA_P-wetherbeei_contig12304.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12304.1.1 vs. uniprot
Match: A0A6H5KVD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.850e-19
Identity = 89/205 (43.41%), Postives = 105/205 (51.22%), Query Frame = 1 
Query:   97 AAVLDRLKADVRRGRTTGV---LSQGSDPLKDVDLASLEEISVSEADWQRVFRLLKDLGVFVD---QGGNSDSEGXXXXXDDVSDDCGSCEDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAVDAT------------LLAYLTTRLRFAEVDAFRALSATSGQDLGEALDYLCLHLPEDELRRAFKK 657
            A V+ +L   V  G T+GV      G DPLK VD+A LEEIS++E DWQ VFRLLKD+G+F      GGNS S     XX        +   GD                       XXXXXXXXXXXXXXXX        AT            +++YLT  L F E DA  ALS TSG DL EALDYLCLH  +  L+R F++
Sbjct:   70 ATVIQKLSERVSSGATSGVGLAAGGGRDPLKGVDVAGLEEISIAEGDWQSVFRLLKDIGLFDSAGPDGGNSSSGSTLSXXXXXXXXRNTTSPGDPGGPNTATGPGASSRQTSAEPAAXXXXXXXXXXXXXXXXPSNLPTAPATSQTQQEQQHDPAIMSYLTKLLAFPEADAATALSNTSGNDLAEALDYLCLHTDDAGLKRGFRR 274
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BLAST of mRNA_P-wetherbeei_contig12304.1.1 vs. uniprot
Match: D7G1J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.990e-15
Identity = 109/202 (53.96%), Postives = 126/202 (62.38%), Query Frame = 1 
Query:   97 AAVLDRLKADVRRGRTTGV---LSQGSDPLKDVDLASLEEISVSEADWQRVFRLLKDLGVFVDQG--GNSDSEGXXXXXDDVSDDCGSCEDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAV----------DATLLAYLTTRLRFAEVDAFRALSATSGQDLGEALDYLCLHLPEDELRRAFKK 657
            A V+ +L   V  G T+GV      G DPLK VD+A LEEIS++E DWQ VFRLLKD+G+F   G  G + S G    X              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               D  +++YLT  L F E DA  ALS TSG DL EALDYLCLH  ++ L+R F++
Sbjct:   93 ATVIQKLSERVSSGATSGVGLAAGGGRDPLKGVDVAGLEEISIAEGDWQSVFRLLKDIGLFDSAGPDGVNSSSGSTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHDPAIMSYLTKLLAFPEADAAAALSNTSGNDLAEALDYLCLHTDDEGLKRGFRR 294
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BLAST of mRNA_P-wetherbeei_contig12304.1.1 vs. uniprot
Match: A0A835Z857_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z857_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.810e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  496 VDATLLAYLTTRLRFAEVDAFRALSATSGQDLGEALDYLCLHLPEDELRRAFKK 657
            +++T + YLT RL F++ DA  AL+AT G DLG+ALDYLCLHLPE  L+  FK+
Sbjct:  172 LNSTFVKYLTQRLSFSDADAMTALAATGGDDLGQALDYLCLHLPESVLKEGFKR 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12304.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVD8_9PHAE9.850e-1943.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J3_ECTSI1.990e-1553.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z857_9STRA8.810e-1057.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12304contigP-wetherbeei_contig12304:458..1558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size741
Hectar predicted targeting categoryother localisation
Exons2
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185944.983906-CDS-P-wetherbeei_contig12304:458..10341683185944.983906-CDS-P-wetherbeei_contig12304:458..1034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12304 459..1034 -
1683185944.99419-CDS-P-wetherbeei_contig12304:1396..15581683185944.99419-CDS-P-wetherbeei_contig12304:1396..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12304 1397..1558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12304.1.1prot_P-wetherbeei_contig12304.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12304 459..1558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12304.1.1

>prot_P-wetherbeei_contig12304.1.1 ID=prot_P-wetherbeei_contig12304.1.1|Name=mRNA_P-wetherbeei_contig12304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=246bp
NDENGRGGGGKGKGGKSGGGAAQKGSAAPFGKAAVLDRLKADVRRGRTTG
VLSQGSDPLKDVDLASLEEISVSEADWQRVFRLLKDLGVFVDQGGNSDSE
GGNSDSDDVSDDCGSCEDGDDDDDCEEEDGEEGSGGGNGRSSLPLSATAA
TAAAAASAAAARRDAVDATLLAYLTTRLRFAEVDAFRALSATSGQDLGEA
LDYLCLHLPEDELRRAFKKKPAMESAGGSGGSAGGGGGGSAGGTLG
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mRNA from alignment at P-wetherbeei_contig12304:458..1558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12304.1.1 ID=mRNA_P-wetherbeei_contig12304.1.1|Name=mRNA_P-wetherbeei_contig12304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1101bp|location=Sequence derived from alignment at P-wetherbeei_contig12304:458..1558- (Phaeothamnion wetherbeei SAG_119_79)
AACGATGAGAACGGTCGCGGCGGCGGGGGGAAGGGGAAGGGTGGGAAATC
AGGCGGCGGCGCCGCCCAGAAAGGCAGCGCTGCGCCGTTCGGCAAAGCCG
CCGTCTTGGACCGTTTGAAGGCCGACGTGCGGCGGGGGAGAACGACGGGA
GTGCTGTCGCAGGTGAGGCGTTTGGTTTCTTCGCTCCTCACCGCGTCGTT
CCAGCTTTGCCTTCGATGTTCGGGGATTGTGCCCCGGCGGTTCTTCTTCT
GCTTGGGCTTGTCGGTTCTATGCCTTTACGTCCCGTTGCAAGTCCGAAGT
AAACGGCTTCCCGGCAAGAAGTGACCGCCAGACTACCTGCTGTGTTTGGC
AACGATGCACAATGCTTTTTAGTCGTCCGAGTGAATACATCGATTGTGCC
TCGGGCTTTTGTGGTTTTGCAAACTTCGCCGAACGTCGAAGATGGGTCGA
CATGGGACGGGGTACTGGAATGAACCAAACTTCCGATTAAATTTCTGTCT
TTGCCTCGGCTGAACCCGCTGCAGGGTAGCGATCCCCTCAAGGACGTGGA
TCTTGCCAGCCTCGAGGAGATCTCCGTGTCGGAAGCGGACTGGCAGCGAG
TCTTCCGCCTCCTGAAAGACCTCGGTGTCTTTGTCGACCAAGGCGGCAAC
AGCGACAGCGAGGGCGGCAACAGTGACAGTGACGATGTAAGCGACGACTG
CGGCAGTTGTGAGGACGGCGACGATGACGACGACTGCGAAGAGGAGGACG
GCGAAGAGGGAAGCGGCGGCGGTAACGGGCGGTCGTCCCTGCCGCTGTCC
GCTACGGCGGCAACTGCGGCGGCGGCGGCATCTGCAGCGGCGGCACGCAG
GGACGCCGTAGACGCGACGCTCCTCGCCTACCTGACGACACGACTGCGTT
TTGCGGAGGTTGACGCTTTTCGGGCGCTGTCCGCCACGTCTGGCCAGGAT
CTGGGTGAGGCGCTCGACTATCTCTGCCTGCATCTGCCGGAAGATGAGCT
GCGCCGCGCCTTCAAGAAGAAGCCGGCGATGGAATCTGCCGGCGGTTCCG
GCGGCAGCGCCGGCGGCGGCGGTGGCGGCAGCGCCGGCGGCACTTTGGGC
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12304:458..1558-

>mRNA_P-wetherbeei_contig12304.1.1 ID=mRNA_P-wetherbeei_contig12304.1.1|Name=mRNA_P-wetherbeei_contig12304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig12304:458..1558- (Phaeothamnion wetherbeei SAG_119_79)
AACGATGAGAACGGTCGCGGCGGCGGGGGGAAGGGGAAGGGTGGGAAATC
AGGCGGCGGCGCCGCCCAGAAAGGCAGCGCTGCGCCGTTCGGCAAAGCCG
CCGTCTTGGACCGTTTGAAGGCCGACGTGCGGCGGGGGAGAACGACGGGA
GTGCTGTCGCAGGGTAGCGATCCCCTCAAGGACGTGGATCTTGCCAGCCT
CGAGGAGATCTCCGTGTCGGAAGCGGACTGGCAGCGAGTCTTCCGCCTCC
TGAAAGACCTCGGTGTCTTTGTCGACCAAGGCGGCAACAGCGACAGCGAG
GGCGGCAACAGTGACAGTGACGATGTAAGCGACGACTGCGGCAGTTGTGA
GGACGGCGACGATGACGACGACTGCGAAGAGGAGGACGGCGAAGAGGGAA
GCGGCGGCGGTAACGGGCGGTCGTCCCTGCCGCTGTCCGCTACGGCGGCA
ACTGCGGCGGCGGCGGCATCTGCAGCGGCGGCACGCAGGGACGCCGTAGA
CGCGACGCTCCTCGCCTACCTGACGACACGACTGCGTTTTGCGGAGGTTG
ACGCTTTTCGGGCGCTGTCCGCCACGTCTGGCCAGGATCTGGGTGAGGCG
CTCGACTATCTCTGCCTGCATCTGCCGGAAGATGAGCTGCGCCGCGCCTT
CAAGAAGAAGCCGGCGATGGAATCTGCCGGCGGTTCCGGCGGCAGCGCCG
GCGGCGGCGGTGGCGGCAGCGCCGGCGGCACTTTGGGC
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