mRNA_P-wetherbeei_contig12205.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12205.1.1
Unique NamemRNA_P-wetherbeei_contig12205.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12205.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12205contigP-wetherbeei_contig12205:194..1777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons4
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.9416742-CDS-P-wetherbeei_contig12205:193..5241683185941.9416742-CDS-P-wetherbeei_contig12205:193..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12205 194..524 +
1683185941.950724-CDS-P-wetherbeei_contig12205:818..10281683185941.950724-CDS-P-wetherbeei_contig12205:818..1028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12205 819..1028 +
1683185941.9595506-CDS-P-wetherbeei_contig12205:1222..13171683185941.9595506-CDS-P-wetherbeei_contig12205:1222..1317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12205 1223..1317 +
1683185941.968652-CDS-P-wetherbeei_contig12205:1724..17751683185941.968652-CDS-P-wetherbeei_contig12205:1724..1775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12205 1725..1775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12205.1.1prot_P-wetherbeei_contig12205.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12205 194..1775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12205.1.1

>prot_P-wetherbeei_contig12205.1.1 ID=prot_P-wetherbeei_contig12205.1.1|Name=mRNA_P-wetherbeei_contig12205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
APSPPPGGDLSWRVVYSRGSRRSHLRSPARAMRRCWWRYFFLLLSVVRRV
CRVGAQPAWTPPTDDCRGPQICYTDVFDSTTSSTERWHSCCGQADGINWR
CGSAFHLSLVYDSSGTITDTFWWPGGATDPACFPENSCLSFQDAVTMYTE
DPCSQCSEASPCADPTQCCDVWGICRDSTDPSGCIPEAAGGTCAFWCTET
PVPTPIPTPSSMLTPPPTLAPSPAPTPFE
back to top

mRNA from alignment at P-wetherbeei_contig12205:194..1777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12205.1.1 ID=mRNA_P-wetherbeei_contig12205.1.1|Name=mRNA_P-wetherbeei_contig12205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1584bp|location=Sequence derived from alignment at P-wetherbeei_contig12205:194..1777+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCATCGCCTCCTCCCGGCGGCGACCTCAGCTGGCGCGTCGTCTATTC
CCGGGGTTCACGCCGAAGCCATTTGCGATCGCCGGCGCGCGCCATGAGAC
GGTGCTGGTGGCGGTATTTTTTTCTTCTCCTCTCCGTAGTCCGCCGGGTC
TGCCGTGTCGGGGCTCAGCCAGCTTGGACACCGCCAACCGACGACTGCCG
GGGACCCCAGATCTGTTACACCGATGTGTTCGACTCAACCACCTCGAGCA
CGGAACGGTGGCACTCCTGCTGCGGGCAGGCCGACGGCATCAACTGGCGT
TGCGGGTCGGCGTTTCATCTCAGCCTAGTTTGTAAGTGGCGGTATTTCAT
GCAACGTATCTCTTTCTTCAATGCAATCTGCGGCTGATATGGGAAGATAT
TTCCTCTTTTCAGCGTTTCAGCAGTCATGTTTTGAGCACGCACACAGCAG
AAGGTTGCGTCTTTTGTCTTCGCAGTAGCACAGTTACTGCCCGTGTGAAT
AATGAAATACCATCACAACAGACACGCATTGCGCTTCCAGTGCAGCCGCT
AATCATTTCTTTCGTCGTCGCCGGCCCTTCCCCGCGCGCCTGGTTGCTTG
CTGTGATTGCTCACTCCGCTTCCAGACGACAGTAGCGGGACCATAACGGA
TACATTTTGGTGGCCTGGCGGTGCAACCGACCCGGCCTGCTTCCCAGAGA
ACTCTTGTCTTAGCTTCCAAGATGCAGTCACCATGTATACGGAAGACCCT
TGCAGTCAGTGCAGCGAGGCATCGCCTTGCGCCGACCCGACACAGTGCTG
CGATGTTTGGGGAATTTGCCGCGATTCGACTGACCGTAAGTCCCCCCCCC
CCAAACTTCGTGCCCAGTCGTTCGAGGCGCCGTTCGCAAGACTTTCCTCC
TTCTGCTTTGTCAGCACGCATGGTGTTTTCGCAGCTGCGGTATACTCCGA
CCTTCTTCCCCGTTCTGCTCCTGTTTTCACGTTCGTTATTCGTCTTTCTT
GCTTCCGGTTCGCCGCCGACATCGTGCAGCAAGTGGGTGCATACCGGAAG
CTGCGGGCGGAACGTGTGCATTCTGGTGTACAGAAACGCCTGTGCCAACG
CCTATACCGACACCCTCATCGATGGTGAGTTGATGTGCCCGAATTTGCGC
TTTGCCTTAGGGTATTCAGAACGTTATAGCTCGCCACATGCCATATAAAA
ACGTTTAACGCCAGCGCATCAGCGCTGGCATCCGGACAGGTGACACGCGT
CAGCGCTCAGGCCCGCCAGCGTTTCCGGTGCAACTGGCATTTGTCAGACG
TTTCCTTTTTTTCTTTTTCTGTCCTTTTGGCTCTCCTGCTTTTAGCCTGG
TGTCTCTATTCGCGCTGGCCACTGGCACTCGCTACGATGCCACTGCTTTT
ATCTTTCCCACTATTTGGCGCCTCTATTTCTCACAGCGGCGGGTTTCAGG
CGATTCTGCTTGTATAATGCACGTTGCATCCTGCGGCTTCATGCCTCTCA
TCTCTGGTTTCTTCCTCTTTCTGTATTACAGTTAACGCCGCCGCCTACAT
TAGCTCCGTCTCCGGCGCCGACGCCTTTCGAAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12205:194..1777+

>mRNA_P-wetherbeei_contig12205.1.1 ID=mRNA_P-wetherbeei_contig12205.1.1|Name=mRNA_P-wetherbeei_contig12205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig12205:194..1777+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCATCGCCTCCTCCCGGCGGCGACCTCAGCTGGCGCGTCGTCTATTC
CCGGGGTTCACGCCGAAGCCATTTGCGATCGCCGGCGCGCGCCATGAGAC
GGTGCTGGTGGCGGTATTTTTTTCTTCTCCTCTCCGTAGTCCGCCGGGTC
TGCCGTGTCGGGGCTCAGCCAGCTTGGACACCGCCAACCGACGACTGCCG
GGGACCCCAGATCTGTTACACCGATGTGTTCGACTCAACCACCTCGAGCA
CGGAACGGTGGCACTCCTGCTGCGGGCAGGCCGACGGCATCAACTGGCGT
TGCGGGTCGGCGTTTCATCTCAGCCTAGTTTACGACAGTAGCGGGACCAT
AACGGATACATTTTGGTGGCCTGGCGGTGCAACCGACCCGGCCTGCTTCC
CAGAGAACTCTTGTCTTAGCTTCCAAGATGCAGTCACCATGTATACGGAA
GACCCTTGCAGTCAGTGCAGCGAGGCATCGCCTTGCGCCGACCCGACACA
GTGCTGCGATGTTTGGGGAATTTGCCGCGATTCGACTGACCCAAGTGGGT
GCATACCGGAAGCTGCGGGCGGAACGTGTGCATTCTGGTGTACAGAAACG
CCTGTGCCAACGCCTATACCGACACCCTCATCGATGTTAACGCCGCCGCC
TACATTAGCTCCGTCTCCGGCGCCGACGCCTTTCGAA
back to top