mRNA_P-wetherbeei_contig12194.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12194.1.1
Unique NamemRNA_P-wetherbeei_contig12194.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Match: A0A835YRA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.930e-27
Identity = 96/299 (32.11%), Postives = 137/299 (45.82%), Query Frame = 1
Query:    1 WQSLVDIGDVYALGGYPRFLPNEALALNCYRTACQCPDPTVAGLAQSKFVTLRLQKIHEIDRSGTHLPEGYGVEACKLAKELLRQMPYMSFNK--PRSSLARLN----LHRHHRAPVQALAQAP------------VQVPPIARVRR------------VPRLDTQNVHDHSIVSAVRVNIDALNARNTIVLNTKACNRALEQVRHAILSCNPKELNGQQKGDALLVLDKLSDSTHTGYNVSDLETLALVWNEISKHDQQAA---LTETLCKQLASGVENGFVVCLSGRISRIVSALDG 798
            W ++V+  D+YA G +PR+ P+ ALAL  Y  A    D  VAG AQS+FV+ RL  +  +D  G  LP  YG   C  A+++ R   Y       P S +  +     +      P+ A+ + P            V +P  AR RR              RLDTQNVHDHS+++A + N+  L A +  +         +  V   I  C+  E N     DAL VL  LS   H+   VS+ + LA VW +I           +  TL  +L   VE+   VC +GR+ R++S LDG
Sbjct:   68 WNAMVEAADIYARGAFPRYCPSVALALTMYALAAASADAEVAGQAQSQFVSTRLHPVAGVDVMGPPLPACYGERMCAAARDMNRADTYCRRRPVPPPSPVVAVREAPVVGEAQVVPIPAVRELPAAAAPPRXXXXRVPIPTAARARRNGRPRRRAAERPCIRLDTQNVHDHSVIAASKSNLARLVAEHGDI-------ELMPDVFVQI--CDLAEGNA----DALSVLKVLSMDEHSTVGVSERQALAHVWTKIIAIRDDTIRENVKGTLILRLGECVEHSLPVCSTGRMVRMLSTLDG 353          
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Match: A0A835YIY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIY3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.150e-20
Identity = 82/266 (30.83%), Postives = 121/266 (45.49%), Query Frame = 1
Query:   73 LALNCYRTACQCPDPTVAGLAQSKFVTLRLQKIHEIDRSGTHLPEGYGVEACKLAKELLRQMPYMSFNKPRSSLARLNLHRHHRAPVQALAQAPVQVP-PIARVRRVPRL---------------DTQNVHDHSIVSAVRVNIDALNARNTIVLNTKACNRALEQVRHAILSCNPK---ELNGQQKGD--ALLVLDKLSDSTHTGYNVSDLETLALVWNEIS-KHDQ--QAALTETLCKQLASGVENGFVVCLSGRISRIVSALDG 798
            +AL  Y  A +C D  VAG  QS+++  RL  +  +D +G H+   Y       A++L  +MP     +PRS   +         P   + Q    +  PIA+ R V R+               DTQNVHDHS+V+A + N+                  A    +H  L   P    E+     G+  AL +L  LS++ HT   VS+ + LA VW  IS K D+  Q  + ETL ++L   +E+   VC +GR  RI++ LDG
Sbjct:    1 MALMLYGIAAECGDAEVAGKGQSEYIATRLNPVSGVDTAGVHIHTCYCDLMLSTARKLRAEMPCQ--RRPRSQTRQPPAKDMPAVPAPPVEQGTRTLEAPIAQARVVQRVVWRASPAARPATRIVDTQNVHDHSVVAASKTNV------------------AQMIKKHGDLELTPDVLLEVRNLAAGNTNALAILTNLSNAKHTTLGVSEKQALAHVWRTISDKTDETLQTNMKETLTQRLGECIEHDLPVCSTGRFVRILATLDG 246          
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Match: A0A250XJZ3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJZ3_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 1.090e-19
Identity = 78/247 (31.58%), Postives = 124/247 (50.20%), Query Frame = 1
Query:  112 DPTVAGLAQSKFVTLRLQKIHEIDRS-GTHLPEGYGVEACKLAKELLRQMPYMSFNKPRSSLARLNLHRHHRAPVQALAQAPVQVPPIARVR-RVP--RLDTQNVHDHSIVSAVRVNIDALNARNTIVLNTKACNRALEQVRHAILSCNPKELNGQQKGDALLVLDKLSDSTHTGYNVSDLETLALVWNEISKHDQQAA---LTETLCKQLASGVENGFVVCLSGRISRIVSALDGTGL-LTDAVPM 828
            D   AG+AQ K + L+   +   D      +    G      A +++  MP  SF++P                   +A      P +  VR +VP  + D QNVHDH +V     N+D + +        ++ N A+ QV  ++L     +++  ++ +A+ VLD LS + HT +  S+ +TLA VW+ I + D +     L E L KQLA+GVE+G VVC +G+I+RI S+L+G+GL LT   P+
Sbjct:    4 DGASAGIAQMKRLELKYSPMSRDDEEHALDIDPRIGSAVYHHAMDVVGGMPMSSFSRP---------------VFPGIASDAETPPKVKEVRVQVPQYKTDAQNVHDHGVVQTTAKNLDLIPSDPR-----RSSNDAIAQVMDSVLK---SDMSVCERENAIRVLDSLSTNVHTKFGRSEAKTLADVWDVIRRSDTEQLRKNLEENLVKQLATGVEDGSVVCSTGKIARITSSLEGSGLGLTTMRPL 227          
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Match: A0A2P0VMR2_9PHYC (Uncharacterized protein n=1 Tax=Tetraselmis virus 1 TaxID=2060617 RepID=A0A2P0VMR2_9PHYC)

HSP 1 Score: 89.7 bits (221), Expect = 1.340e-16
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  400 DTQNVHDHSIVSAVRVNIDALNARNTIVLNTKACNRALEQVRHAILSCNPKELNGQQKGDALLVLDKLSDSTHTGYNVSDLETLALVWNEISKHDQQAA---LTETLCKQLASGVENGFVVCLSGRISRIVSALDGTGLLTDAV 822
            D QN HDH + +A +  I  +      +  +  C+R +E++   +L+    + +  +K DAL V++ L   TH+ YN S+ +  A++ ++I K         + +TL KQ+ASGVE G VVC SG+I R++S  DGTG+  + V
Sbjct:  320 DAQNSHDHGVTAAFKKQISEMANETETIPESYNCDRHMEKIVDTVLN---SDSSPDEKNDALQVIENLGSRTHSTYNFSERQIAAMIIDKIDKIADPVLKRNVKDTLVKQMASGVEYGKVVCSSGKIGRLMSTFDGTGMFENKV 460          
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Match: B5LWL2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL2_9PHYC)

HSP 1 Score: 64.3 bits (155), Expect = 3.240e-8
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  400 DTQNVHDHSIVSAVRVNIDALNARNTIVLNTKACNRALEQVRHAILSCNPKELNGQQKGDALLVLDKLS--------DSTHTGYNVSDLETLALVWN--EISKHDQQAALTETLCKQLASGVENGFVVCLSGRISRIVSALDGT 801
            D+QN HDH +V+A+  N+  L        +++    A E V  A+  C    L  +     L VL  +S        D+  T  NV D+    ++W    ++  D ++ + ETL K+LASGVE   VVC +GR+ RI+S  +GT
Sbjct:  100 DSQNSHDHGVVTALVQNLKKLGI--DFKSSSREFREADEVVAEAVEFCTSMSLPDEDVNKILRVLHSISQTDPSRFRDTDFTQINVLDM----VLWKIATVNPDDVRSNMRETLLKRLASGVEGDSVVCGTGRMGRILSVFEGT 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YRA6_9STRA4.930e-2732.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIY3_9STRA5.150e-2030.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A250XJZ3_9CHLO1.090e-1931.58Uncharacterized protein (Fragment) n=1 Tax=Chlamyd... [more]
A0A2P0VMR2_9PHYC1.340e-1634.03Uncharacterized protein n=1 Tax=Tetraselmis virus ... [more]
B5LWL2_9PHYC3.240e-832.64Uncharacterized protein n=1 Tax=Feldmannia species... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12194contigP-wetherbeei_contig12194:1204..2031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size828
Hectar predicted targeting categoryother localisation
Exons1
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.2285473-CDS-P-wetherbeei_contig12194:1203..20311683185941.2285473-CDS-P-wetherbeei_contig12194:1203..2031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12194 1204..2031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12194.1.1prot_P-wetherbeei_contig12194.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12194 1204..2031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12194.1.1

>prot_P-wetherbeei_contig12194.1.1 ID=prot_P-wetherbeei_contig12194.1.1|Name=mRNA_P-wetherbeei_contig12194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
WQSLVDIGDVYALGGYPRFLPNEALALNCYRTACQCPDPTVAGLAQSKFV
TLRLQKIHEIDRSGTHLPEGYGVEACKLAKELLRQMPYMSFNKPRSSLAR
LNLHRHHRAPVQALAQAPVQVPPIARVRRVPRLDTQNVHDHSIVSAVRVN
IDALNARNTIVLNTKACNRALEQVRHAILSCNPKELNGQQKGDALLVLDK
LSDSTHTGYNVSDLETLALVWNEISKHDQQAALTETLCKQLASGVENGFV
VCLSGRISRIVSALDGTGLLTDAVPM
back to top

mRNA from alignment at P-wetherbeei_contig12194:1204..2031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12194.1.1 ID=mRNA_P-wetherbeei_contig12194.1.1|Name=mRNA_P-wetherbeei_contig12194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig12194:1204..2031+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCAATCTCTCGTTGACATTGGCGACGTCTACGCTCTTGGTGGATATCC GCGGTTTCTGCCAAATGAAGCACTTGCTCTGAATTGTTACCGCACTGCCT GTCAATGTCCAGACCCCACCGTGGCAGGGTTAGCACAGTCCAAATTTGTG ACTCTTCGGTTGCAAAAAATTCACGAGATCGACCGTAGTGGGACACACTT GCCAGAAGGCTATGGAGTTGAGGCATGCAAATTGGCCAAAGAGCTCCTCA GACAAATGCCTTACATGTCGTTCAACAAGCCAAGGTCGAGTTTGGCACGA CTCAATCTTCATCGGCACCATAGAGCTCCTGTACAAGCTCTTGCGCAAGC CCCTGTACAAGTTCCTCCAATAGCACGAGTCAGGCGGGTTCCGCGTCTTG ACACTCAAAACGTCCACGATCATTCAATAGTGAGCGCCGTACGGGTAAAC ATTGATGCACTGAATGCACGCAATACGATAGTATTGAACACCAAGGCGTG TAACCGCGCGCTCGAGCAAGTGCGGCACGCAATCCTTTCGTGCAATCCCA AAGAACTAAACGGGCAGCAAAAGGGAGACGCACTACTCGTCCTGGACAAG TTATCCGACTCAACGCACACCGGATACAACGTCAGCGACTTGGAAACGCT GGCTCTTGTGTGGAACGAGATTTCAAAGCATGACCAACAAGCGGCGCTCA CGGAAACGCTGTGCAAACAACTGGCCTCCGGGGTCGAAAACGGATTTGTC GTTTGCTTGAGCGGAAGAATATCACGGATCGTATCGGCGCTCGATGGGAC CGGACTCCTGACCGATGCCGTTCCAATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12194:1204..2031+

>mRNA_P-wetherbeei_contig12194.1.1 ID=mRNA_P-wetherbeei_contig12194.1.1|Name=mRNA_P-wetherbeei_contig12194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig12194:1204..2031+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCAATCTCTCGTTGACATTGGCGACGTCTACGCTCTTGGTGGATATCC
GCGGTTTCTGCCAAATGAAGCACTTGCTCTGAATTGTTACCGCACTGCCT
GTCAATGTCCAGACCCCACCGTGGCAGGGTTAGCACAGTCCAAATTTGTG
ACTCTTCGGTTGCAAAAAATTCACGAGATCGACCGTAGTGGGACACACTT
GCCAGAAGGCTATGGAGTTGAGGCATGCAAATTGGCCAAAGAGCTCCTCA
GACAAATGCCTTACATGTCGTTCAACAAGCCAAGGTCGAGTTTGGCACGA
CTCAATCTTCATCGGCACCATAGAGCTCCTGTACAAGCTCTTGCGCAAGC
CCCTGTACAAGTTCCTCCAATAGCACGAGTCAGGCGGGTTCCGCGTCTTG
ACACTCAAAACGTCCACGATCATTCAATAGTGAGCGCCGTACGGGTAAAC
ATTGATGCACTGAATGCACGCAATACGATAGTATTGAACACCAAGGCGTG
TAACCGCGCGCTCGAGCAAGTGCGGCACGCAATCCTTTCGTGCAATCCCA
AAGAACTAAACGGGCAGCAAAAGGGAGACGCACTACTCGTCCTGGACAAG
TTATCCGACTCAACGCACACCGGATACAACGTCAGCGACTTGGAAACGCT
GGCTCTTGTGTGGAACGAGATTTCAAAGCATGACCAACAAGCGGCGCTCA
CGGAAACGCTGTGCAAACAACTGGCCTCCGGGGTCGAAAACGGATTTGTC
GTTTGCTTGAGCGGAAGAATATCACGGATCGTATCGGCGCTCGATGGGAC
CGGACTCCTGACCGATGCCGTTCCAATG
back to top