mRNA_P-wetherbeei_contig12188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12188.1.1
Unique NamemRNA_P-wetherbeei_contig12188.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.730e-43
Identity = 76/120 (63.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 LEVYDAIVCDPPYGLRAGARKSGAAKPNAHPIRNRETF--IPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +E+YD IV DPPYG+RAGARKSG  +  A  ++  E F  +P TQ YPV DVLVDLL+VA ++LV+ GRLCYLL STW+FD++ DLPRHPCL L HHS+QGL+Q +CRR+ITM KT  YD
Sbjct:  291 MELYDCIVTDPPYGIRAGARKSGR-EGEARTVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQTLVLGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKTCRYD 409          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A6H5JUH8_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.000e-42
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 LEVYDAIVCDPPYGLRAGARKSGAAKPNAHPIRNRETF--IPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +E+YD IV DPPYG+RAGARKSG  +  A  ++  E F  +P TQ YPV DVLVDLL+VA ++L + GRLCYLL STW+FD++ DLPRHPCL L HHS+QGL+Q +CRR+ITM KT  YD
Sbjct:  291 MELYDCIVTDPPYGIRAGARKSGR-EGEARIVKPDERFDHMPHTQHYPVEDVLVDLLEVAAQTLALGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKTCRYD 409          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A1Z5KIU2_FISSO (tRNA (Guanine10-N2)-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIU2_FISSO)

HSP 1 Score: 141 bits (356), Expect = 3.360e-37
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPIRN--RETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYDAA 360
            +YDAI+CDPPYG+RAGARKSG+   N  P+    R   I QT+ YPV DV+ DLLDVA R+LV+ GRL Y++PS  DFD E DLPRH CLR++H   Q L  ++ RRM+TMEK   YD +
Sbjct:  373 MYDAIICDPPYGIRAGARKSGSRLTNPKPVPEDQRHDHIAQTRPYPVSDVMADLLDVAARNLVLGGRLVYIIPSYADFDDECDLPRHECLRIVHICYQPLGSELGRRMVTMEKIGEYDVS 492          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A836CPF8_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPF8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.300e-34
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPIR--NRETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYDAA 360
            ++D IV DPPYG+RAGAR++G+ + N  P+R   R   +P T+ Y V DVLVDLLDVA R+L    RLCYL+P T++      LP HPCLRL+ HSVQGL++  CRR++TM K   YD A
Sbjct:  294 LFDGIVTDPPYGIRAGARRTGSRRANVTPVRPEQRADHVPMTRPYAVEDVLVDLLDVAARALRRGRRLCYLMPGTYETCTRASLPGHPCLRLVAHSVQGLTKTTCRRLVTMVKVAEYDPA 413          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A7S3PUT2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUT2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.800e-34
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPIR--NRETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +YDAI+ DPPYG+RAGARKSG+      P++  +R   I QT+ Y V DV+ DLLDV+ R+LV+ GRL Y++PS  DFD+ETDLP H C RL+H   Q L   + RR +TMEK   YD
Sbjct:  357 MYDAIITDPPYGIRAGARKSGSKLDKPRPVKEEDRHDHIAQTKVYAVSDVMADLLDVSARNLVMGGRLVYVIPSMTDFDVETDLPNHACFRLVHVCYQPLQSNLGRRTVTMEKVGEYD 474          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A448ZQV7_9STRA (UPF0020 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQV7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.880e-34
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPI--RNRETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +YDAI+CDPPYG+RAGAR++G+   N  PI   NR   I QT+ Y V DV+ DLLDVA R+LVV GRL Y++PS  DFD E DLPRH CL L+H   Q  S ++ RR++ MEK   YD
Sbjct:  455 LYDAILCDPPYGIRAGARQTGSRLENPRPILEENRHDHIAQTKPYVVSDVMSDLLDVAARTLVVGGRLVYVIPSFRDFDEERDLPRHDCLELVHTCYQPFSTELGRRIVAMEKVSDYD 572          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A7S0GLP5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLP5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.850e-34
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPIRN-----RETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPS-TWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAY 351
            +YDAI+CDPPYG+RAGARKSG  + N H I++         I QT  YPV DV+ DLLDVA ++LV+ GRL Y++PS ++ F+IETDLPRH CL L H   Q L     RRM+TM KT+ Y
Sbjct:   45 MYDAIICDPPYGIRAGARKSGCGE-NTHRIKHITDTXXXXXIAQTTVYPVSDVMADLLDVAAQTLVLHGRLVYIIPSLSYGFNIETDLPRHACLTLEHVCFQPLQTHFGRRMVTMIKTKEY 164          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A7S4QDS7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QDS7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.260e-34
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPIRNRETF--IPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +YDAIV DPPYG+RAGARKSG+   N  P+     +  I QT+ Y V DV+ DLLDVA R+LV+ GRLCY++PS  DFD + DLPRH CL+L+H   Q L  ++ RR++ MEK   Y+
Sbjct:  340 LYDAIVTDPPYGIRAGARKSGSRLENPRPVEEEHRYDHIAQTKPYAVSDVMSDLLDVAARTLVMGGRLCYVIPSMTDFDEQVDLPRHECLKLVHVCYQPLQMELGRRIVAMEKIADYN 457          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A7S0UL30_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UL30_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.290e-33
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPI--RNRETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYDAA 360
            +YDAIVCDPPYG+RAGAR++G+      P+   NR   I QT+ Y V DV+ DLLDVA  +L V GRL Y++PS  +FD E DLPRH CL LIH   Q  S ++ RR++ M+K   YD +
Sbjct:   51 LYDAIVCDPPYGIRAGARQTGSKLNKPRPVLEENRHDHIAQTKAYAVSDVMSDLLDVAASTLKVGGRLVYIIPSFQNFDEERDLPRHECLELIHTCYQPFSLELGRRIVAMKKIADYDVS 170          
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Match: A0A6V0BUF4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BUF4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.420e-33
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    7 VYDAIVCDPPYGLRAGARKSGAAKPNAHPI--RNRETFIPQTQTYPVGDVLVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGLSQKICRRMITMEKTQAYD 354
            +YDAI+CDPPYG+RAGARK+G+       I   NR T IPQT+ Y V DV+ DLLDVA R+LV+ GRL Y++PS  DFD + DLPRH CL LIH   Q  S ++ RR++ M+K   YD
Sbjct:  530 LYDAILCDPPYGIRAGARKTGSKLDQPRQILEENRHTHIPQTKPYVVSDVMSDLLDVAARTLVLGGRLVYVIPSFRDFDDDRDLPRHDCLELIHVCYQPFSNELGRRIVAMKKITDYD 647          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT48_ECTSI4.730e-4363.33UPF0020 domain-containing protein (Fragment) n=1 T... [more]
A0A6H5JUH8_9PHAE3.000e-4262.50UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1Z5KIU2_FISSO3.360e-3756.67tRNA (Guanine10-N2)-methyltransferase n=1 Tax=Fist... [more]
A0A836CPF8_9STRA1.300e-3453.33S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S3PUT2_9STRA2.800e-3453.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A448ZQV7_9STRA2.880e-3455.93UPF0020 domain-containing protein n=1 Tax=Pseudo-n... [more]
A0A7S0GLP5_9STRA4.850e-3454.55Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4QDS7_9STRA7.260e-3453.39Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0UL30_9STRA2.290e-3351.67Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A6V0BUF4_9STRA3.420e-3355.08Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12188contigP-wetherbeei_contig12188:371..1661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT48
Preferred nameTRMT11
PFAMsUPF0020
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K02995,ko:K15430
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0002940,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0043528,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Exons4
Evalue7.75e-44
EggNOG OGsCOG1041@1|root,KOG2671@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_004210.1
EC2.1.1.214
DescriptiontRNA binding
Cds size360
COG categoryL
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.0372105-CDS-P-wetherbeei_contig12188:370..4431683185941.0372105-CDS-P-wetherbeei_contig12188:370..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12188 371..443 -
1683185941.048277-CDS-P-wetherbeei_contig12188:719..8531683185941.048277-CDS-P-wetherbeei_contig12188:719..853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12188 720..853 -
1683185941.0581856-CDS-P-wetherbeei_contig12188:1068..10981683185941.0581856-CDS-P-wetherbeei_contig12188:1068..1098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12188 1069..1098 -
1683185941.0674467-CDS-P-wetherbeei_contig12188:1538..16611683185941.0674467-CDS-P-wetherbeei_contig12188:1538..1661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12188 1539..1661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12188.1.1prot_P-wetherbeei_contig12188.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12188 371..1661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12188.1.1

>prot_P-wetherbeei_contig12188.1.1 ID=prot_P-wetherbeei_contig12188.1.1|Name=mRNA_P-wetherbeei_contig12188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
LEVYDAIVCDPPYGLRAGARKSGAAKPNAHPIRNRETFIPQTQTYPVGDV
LVDLLDVAGRSLVVRGRLCYLLPSTWDFDIETDLPRHPCLRLIHHSVQGL
SQKICRRMITMEKTQAYDAA
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mRNA from alignment at P-wetherbeei_contig12188:371..1661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12188.1.1 ID=mRNA_P-wetherbeei_contig12188.1.1|Name=mRNA_P-wetherbeei_contig12188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1291bp|location=Sequence derived from alignment at P-wetherbeei_contig12188:371..1661- (Phaeothamnion wetherbeei SAG_119_79)
CTTGAGGTTTACGATGCGATCGTGTGCGATCCGCCCTACGGGCTGCGGGC CGGGGCGCGAAAGTCAGGCGCCGCTAAGCCGAATGCCCACCCCATCCGCA ACAGGGAGACCTTTATACCGCAGGTAACCGATAACGGTGACGCGGTGTGG CCGTGGCCGGTTGTCGCATTTTGCTTTATCTGAGCGTCCAGAAAGGGAAA GTTGTTTTTAGGTTGTTTTCTCTGCGTATTTGCGTCTTCGTGCGCAGTTG ATGTGATGTGTTTCGCGAGCAGCAGCCCGCCGTTACGGCATCGTCTACTC AAGAGGTGCTCTTCGGGGGTTTGCGTTCTTTTGCTGTATCGGCGCGGCTC GGCTCGGTCTGTACGGGGGAACAATTGGAACGAGGTGGTGTCTATTCACC GCAATGGGCTTTCGTCACGAGGCTGTCCTTCCTTCACTGAACCAAGGCTT TCGTCCGAATAAGAGTCCTCGTTGACCTGGCTCACTTGCATCTACACGCT CACTGCTGCTTTCTTTCGTGGCACGGTTCCGCTGCCGCTGTCACTCTTGT GGTGCACCTGCAGACGCAAACGTACCCTGTGGGGGATGTTCTGGTAAGTC TGCTTCTATTTCCCTTTCTCCGTCATCCGTCGTATCTACCTCTTCTCCTA CGCGTTTTGCCTCCCATTCACGCTCTTCCAGTGCTCTTTTGCTTCCCCCC TCCTGCTTCCTGATACATAAGCGCATTTTGTACCTGGAGAGTGTTTGCAA CTGTCTCATCCTCCAAATCTTCTCGTGTTCGCCCGTCGTCCGCACGTTGC GCGGACAGGTGGACCTGCTGGATGTGGCGGGACGGTCCCTGGTGGTGCGC GGGCGGCTCTGCTACCTGTTGCCGAGCACATGGGACTTCGACATCGAAAC TGACCTCCCCCGCCACCCTTGCCTGCGGCTCATCCACCACAGGTGCCGTC TCATCACTGCGCTTACTGTCTTTTCTGCCTCGCCCCTTTGATCTACTGTT GTACGTGGTCTAGAGAGATCAAATTTTGTCTTGTGTGGGCTATCGTTGGT TTTTGTTACCTTACGGCTGCTTGCAGTGCCGGGGGTGCCTGATTTCTCTT TTTTCCCGTTTCTTTGCTTCTTCTCGTCGTTCTGCTGCTGCGGAACAGTA GGTGCGTTTCTATTTTCAGATTTTCCCGTTCTTTTTGCCAATTCCACTCT CTCGTCGCACGAGAACAGCGTGCAAGGCCTGAGCCAGAAGATCTGCCGGC GGATGATTACGATGGAGAAGACGCAGGCTTACGACGCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12188:371..1661-

>mRNA_P-wetherbeei_contig12188.1.1 ID=mRNA_P-wetherbeei_contig12188.1.1|Name=mRNA_P-wetherbeei_contig12188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig12188:371..1661- (Phaeothamnion wetherbeei SAG_119_79)
CTTGAGGTTTACGATGCGATCGTGTGCGATCCGCCCTACGGGCTGCGGGC
CGGGGCGCGAAAGTCAGGCGCCGCTAAGCCGAATGCCCACCCCATCCGCA
ACAGGGAGACCTTTATACCGCAGACGCAAACGTACCCTGTGGGGGATGTT
CTGGTGGACCTGCTGGATGTGGCGGGACGGTCCCTGGTGGTGCGCGGGCG
GCTCTGCTACCTGTTGCCGAGCACATGGGACTTCGACATCGAAACTGACC
TCCCCCGCCACCCTTGCCTGCGGCTCATCCACCACAGCGTGCAAGGCCTG
AGCCAGAAGATCTGCCGGCGGATGATTACGATGGAGAAGACGCAGGCTTA
CGACGCTGCG
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