mRNA_P-wetherbeei_contig1214.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1214.2.1
Unique NamemRNA_P-wetherbeei_contig1214.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: R7TC80_CAPTE (Nucleolar protein 10 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TC80_CAPTE)

HSP 1 Score: 101 bits (251), Expect = 3.240e-26
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPK 183
            M LMYYL ESG+RVYT++K+DP G  T SAHPARFSPDDQFSKQR  NK R+GLLPTQQPK
Sbjct:    1 MFLMYYLSESGERVYTMEKVDPNGKPTYSAHPARFSPDDQFSKQRYLNKKRFGLLPTQQPK 61
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: L8H2Y9_ACACA (Nucleolar protein 10 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2Y9_ACACA)

HSP 1 Score: 98.6 bits (244), Expect = 3.770e-25
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQP 180
            MHLMYYLD+ GKRVYTL+K +P+G  T+SAHPARFSPDD+FS+QR+  K R+G+LPTQQP
Sbjct:    1 MHLMYYLDKDGKRVYTLKKSNPEGTATVSAHPARFSPDDKFSRQRVTLKKRFGILPTQQP 60
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: J9Q3Z9_OSTED (Nucleolar protein 10 (Fragment) n=1 Tax=Ostrea edulis TaxID=37623 RepID=J9Q3Z9_OSTED)

HSP 1 Score: 98.2 bits (243), Expect = 8.490e-25
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPKV 186
            M LMYYL+ESG +VYTL+K DP G  TLSAHPARFSPDD+FSKQR+  K R+GLLPTQQPK 
Sbjct:   18 MLLMYYLNESGDKVYTLKKTDPMGCPTLSAHPARFSPDDKFSKQRVTLKKRFGLLPTQQPKA 79
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: UPI0006C94F3D (H/ACA ribonucleoprotein complex subunit 3 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C94F3D)

HSP 1 Score: 97.4 bits (241), Expect = 1.080e-24
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQP 180
            M+LMYYLD++G R+YTL+KMDP G  TLSAHPARFSP+D++SK+RI  K R+GLLPTQQP
Sbjct:    1 MYLMYYLDDNGNRIYTLKKMDPYGKPTLSAHPARFSPEDKYSKERITLKRRFGLLPTQQP 60
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: A0A061SA74_9CHLO (Nucleolar protein 10 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SA74_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 2.180e-24
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPKVQL 192
            M+LMYYLD+SG RVY+L+K  P G  TLSAHPARFSPDD+FSK+R+  K R+G+LPTQQP  +L
Sbjct:    1 MYLMYYLDDSGNRVYSLKKSTPDGSPTLSAHPARFSPDDKFSKERVTIKKRFGILPTQQPAPEL 64
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: A0A0L0HHH4_SPIPD (H/ACA ribonucleoprotein complex subunit NOP10 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HHH4_SPIPD)

HSP 1 Score: 96.3 bits (238), Expect = 3.170e-24
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQ 177
            MHLMYYLDESGKRVYTL+K+ P+G  T SAHPARFSPDD++S+ R+  K R+GLLPTQQ
Sbjct:    1 MHLMYYLDESGKRVYTLKKLTPEGSVTKSAHPARFSPDDKYSRHRVTLKRRFGLLPTQQ 59
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: K3WVP2_GLOUD (Nucleolar protein 10 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WVP2_GLOUD)

HSP 1 Score: 95.5 bits (236), Expect = 6.390e-24
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQP 180
            MHLMYYL E GKRVYTL+K DP G  T SAHPARFSPDD+FSK+RI  K R+GLLPTQ P
Sbjct:    1 MHLMYYLGEDGKRVYTLKKEDPSGKPTHSAHPARFSPDDKFSKERIITKKRFGLLPTQTP 60
[Close]
BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: K8F2J5_9CHLO (Nucleolar protein 10 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F2J5_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 1.260e-23
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPKVQ 189
            M+LMYYL+E GKRVYTL+K  P G  TLSAHPARFSPDD+FSKQR+  K R+GLL TQQP+ Q
Sbjct:    1 MYLMYYLNEDGKRVYTLKKTGPDGKPTLSAHPARFSPDDKFSKQRVACKKRFGLLLTQQPEKQ 63
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BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: A0A836CEE6_9STRA (Nucleolar protein 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.260e-23
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPKVQL 192
            MHLMYY+ E GKRVYTL+K DP G  T+SAHPARFSPDD+FS QR+ NK R+G+L TQ P  +L
Sbjct:    1 MHLMYYMGEDGKRVYTLKKEDPTGSPTVSAHPARFSPDDKFSHQRVVNKKRFGILLTQSPAPEL 64
[Close]
BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Match: F0WPK8_9STRA (Nucleolar protein 10 n=2 Tax=Albugo TaxID=65356 RepID=F0WPK8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.260e-23
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKLRYGLLPTQQPKVQL 192
            MHLMYY+   GKRVYTLQKMD +G  T SAHPARFSPDD+FSK+RI  K R+GLLPTQ P   L
Sbjct:    1 MHLMYYIGSDGKRVYTLQKMDVEGTPTQSAHPARFSPDDKFSKERIICKKRFGLLPTQSPDTLL 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1214.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7TC80_CAPTE3.240e-2677.05Nucleolar protein 10 n=1 Tax=Capitella teleta TaxI... [more]
L8H2Y9_ACACA3.770e-2571.67Nucleolar protein 10 n=1 Tax=Acanthamoeba castella... [more]
J9Q3Z9_OSTED8.490e-2574.19Nucleolar protein 10 (Fragment) n=1 Tax=Ostrea edu... [more]
UPI0006C94F3D1.080e-2471.67H/ACA ribonucleoprotein complex subunit 3 n=1 Tax=... [more]
A0A061SA74_9CHLO2.180e-2467.19Nucleolar protein 10 n=1 Tax=Tetraselmis sp. GSL01... [more]
A0A0L0HHH4_SPIPD3.170e-2472.88H/ACA ribonucleoprotein complex subunit NOP10 n=2 ... [more]
K3WVP2_GLOUD6.390e-2475.00Nucleolar protein 10 n=3 Tax=Pythiaceae TaxID=4782... [more]
K8F2J5_9CHLO1.260e-2371.43Nucleolar protein 10 n=1 Tax=Bathycoccus prasinos ... [more]
A0A836CEE6_9STRA1.260e-2367.19Nucleolar protein 10 n=1 Tax=Tribonema minus TaxID... [more]
F0WPK8_9STRA1.260e-2370.31Nucleolar protein 10 n=2 Tax=Albugo TaxID=65356 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1214contigP-wetherbeei_contig1214:1094..1549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109760.SPPG_04011T0
Preferred nameNOP10
PFAMsNop10p
Model size319
Max annot lvl4751|Fungi
KEGG koko:K11130
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000469,GO:0000723,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016604,GO:0018130,GO:0019438,GO:0019843,GO:0022613,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032879,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048518,GO:0050789,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090305,GO:0090501,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904872,GO:1904874,GO:1990904
Exons2
Evalue1.03e-25
EggNOG OGsCOG2260@1|root,KOG3503@2759|Eukaryota,3A8CK@33154|Opisthokonta,3P6R9@4751|Fungi
Ec32 ortholog descriptionNop10 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-04_000370.1
DescriptionH aca ribonucleoprotein complex subunit 3
Cds size195
COG categoryA
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.8978486-UTR-P-wetherbeei_contig1214:1093..12171683185938.8978486-UTR-P-wetherbeei_contig1214:1093..1217Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1214 1094..1217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.9068599-CDS-P-wetherbeei_contig1214:1217..13581683185938.9068599-CDS-P-wetherbeei_contig1214:1217..1358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1214 1218..1358 -
1683185938.914463-CDS-P-wetherbeei_contig1214:1495..15491683185938.914463-CDS-P-wetherbeei_contig1214:1495..1549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1214 1496..1549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1214.2.1prot_P-wetherbeei_contig1214.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1214 1218..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1214.2.1

>prot_P-wetherbeei_contig1214.2.1 ID=prot_P-wetherbeei_contig1214.2.1|Name=mRNA_P-wetherbeei_contig1214.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MHLMYYLDESGKRVYTLQKMDPQGGQTLSAHPARFSPDDQFSKQRINNKL
RYGLLPTQQPKVQL*
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mRNA from alignment at P-wetherbeei_contig1214:1094..1549-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1214.2.1 ID=mRNA_P-wetherbeei_contig1214.2.1|Name=mRNA_P-wetherbeei_contig1214.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1214:1094..1549- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCTCATGTATTACTTGGATGAGAGCGGGAAGCGAGTTTACACGCT
CCAGGTGAGCTTGGAAAGAGGTGGAAGGGCAAACAACTTCTGACCTCGCG
TGAAGACGATGGCCCACCCTCAAGCCTCGGCCCTATCGCTTTCTCTAACC
TCGTTCCTTCCTCCCGCTGGCACCCTTCCCGTGAACCGCAGAAAATGGAC
CCTCAGGGCGGGCAGACGCTGTCCGCCCACCCGGCGCGTTTCTCGCCCGA
CGACCAGTTCTCCAAGCAGAGAATCAACAACAAGTTGAGATATGGGCTCC
TGCCAACGCAGCAGCCGAAGGTCCAGCTTTGAGAGCGTTTGCTGTGCGGT
TCTGGCAGGGGACATTTGTAAATAAGCACGAGAAGTGACTGGCTGTGCTT
GCGCCGCGCCACCACCACCATTTCTGGTTTCGTTAATATCACAAGAGTAT
CGATCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1214:1094..1549-

>mRNA_P-wetherbeei_contig1214.2.1 ID=mRNA_P-wetherbeei_contig1214.2.1|Name=mRNA_P-wetherbeei_contig1214.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1214:1094..1549- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCTCATGTATTACTTGGATGAGAGCGGGAAGCGAGTTTACACGCT
CCAGAAAATGGACCCTCAGGGCGGGCAGACGCTGTCCGCCCACCCGGCGC
GTTTCTCGCCCGACGACCAGTTCTCCAAGCAGAGAATCAACAACAAGTTG
AGATATGGGCTCCTGCCAACGCAGCAGCCGAAGGTCCAGCTTTGA
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