mRNA_P-wetherbeei_contig12136.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12136.1.1
Unique NamemRNA_P-wetherbeei_contig12136.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12136contigP-wetherbeei_contig12136:186..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000019568
PFAMsPAS_3
Model size470
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-07
EggNOG OGs2CNC0@1|root,2QV4B@2759|Eukaryota,1MFBH@121069|Pythiales
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-17_002510.1
DescriptionMulti-sensor hybrid histidine kinase. Source PGD
Cds size468
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.8308277-CDS-P-wetherbeei_contig12136:185..6531683185938.8308277-CDS-P-wetherbeei_contig12136:185..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12136 186..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12136.1.1prot_P-wetherbeei_contig12136.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12136 186..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12136.1.1

>prot_P-wetherbeei_contig12136.1.1 ID=prot_P-wetherbeei_contig12136.1.1|Name=mRNA_P-wetherbeei_contig12136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
AVATAAAAAAVAASGGGSSAKGGARAMEAMAAGSAAPAATPSAPQAKRLR
RNVAAMSEEEKREWAREQNREHSRLSRARRKEREQQLMSDATRLRVFRTL
LDELPDLVSLHSDGTHDLMFLYANAAFQRLLGHHPAALMGRPLLDVVHRD
DAEVAR
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mRNA from alignment at P-wetherbeei_contig12136:186..653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12136.1.1 ID=mRNA_P-wetherbeei_contig12136.1.1|Name=mRNA_P-wetherbeei_contig12136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig12136:186..653- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGCCACGGCAGCGGCGGCTGCGGCCGTTGCTGCCAGCGGCGGCGG
TAGCAGTGCCAAAGGCGGGGCCAGGGCGATGGAAGCGATGGCGGCGGGAT
CTGCTGCGCCGGCGGCGACACCCAGTGCGCCGCAGGCGAAGCGCCTGCGG
CGCAACGTCGCCGCTATGTCGGAGGAGGAGAAGCGGGAGTGGGCGCGCGA
GCAGAACCGGGAGCACTCGCGCCTGTCACGGGCAAGGCGGAAGGAGCGCG
AGCAGCAGCTGATGTCGGACGCAACGCGACTGCGCGTCTTCCGGACGCTG
CTGGACGAGCTGCCGGACCTGGTGTCGCTGCACTCGGACGGCACGCACGA
CCTGATGTTCCTCTATGCAAACGCGGCGTTCCAGCGGCTGCTCGGCCACC
ACCCTGCGGCGCTCATGGGACGTCCGCTGCTGGACGTCGTGCATCGCGAC
GACGCGGAGGTGGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12136:186..653-

>mRNA_P-wetherbeei_contig12136.1.1 ID=mRNA_P-wetherbeei_contig12136.1.1|Name=mRNA_P-wetherbeei_contig12136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig12136:186..653- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGCCACGGCAGCGGCGGCTGCGGCCGTTGCTGCCAGCGGCGGCGG
TAGCAGTGCCAAAGGCGGGGCCAGGGCGATGGAAGCGATGGCGGCGGGAT
CTGCTGCGCCGGCGGCGACACCCAGTGCGCCGCAGGCGAAGCGCCTGCGG
CGCAACGTCGCCGCTATGTCGGAGGAGGAGAAGCGGGAGTGGGCGCGCGA
GCAGAACCGGGAGCACTCGCGCCTGTCACGGGCAAGGCGGAAGGAGCGCG
AGCAGCAGCTGATGTCGGACGCAACGCGACTGCGCGTCTTCCGGACGCTG
CTGGACGAGCTGCCGGACCTGGTGTCGCTGCACTCGGACGGCACGCACGA
CCTGATGTTCCTCTATGCAAACGCGGCGTTCCAGCGGCTGCTCGGCCACC
ACCCTGCGGCGCTCATGGGACGTCCGCTGCTGGACGTCGTGCATCGCGAC
GACGCGGAGGTGGCGCGG
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