mRNA_P-wetherbeei_contig1213.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1213.2.1
Unique NamemRNA_P-wetherbeei_contig1213.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1213.2.1 vs. uniprot
Match: A0A1E4G2E7_9BACT (Peptidase_M78 domain-containing protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4G2E7_9BACT)

HSP 1 Score: 116 bits (291), Expect = 1.530e-29
Identity = 63/178 (35.39%), Postives = 95/178 (53.37%), Query Frame = 1 
Query:   10 DCQGLIDQLAARKGKNFITRAEALTPVIHMLGYKVIWSPKVPDDIFAYTNFDDRRVILAKNLRSRLDFPESFQALVHATLAHELGHIRMHASAALRGKRELRWENEAYSYSYAFLVPYKELMNEPECRILRAGLLQDQETLWKNVLRLAEVYRVSGAFMAIVLQRYGVIKFDHWNRTI 543
            DC+ L+ ++  +  + +   AE +   I + GY + +     +   A+ + ++RRV++AK+   +LD P     +++ TLAHELGH R+HA     G+    WE EA  Y+  FL+P+  L N PE   L     + Q   W NVL LAE + VSG FMA  L  YG++  D   RTI
Sbjct:   11 DCRQLLARVRRKHPRPYGVPAEVIKEAIALAGYTISFEEMEDESDLAHCDAEERRVVVAKDFGLKLDCPWVAHQVLNFTLAHELGHARLHAPLLRSGEWHPHWEEEATFYARVFLIPHYILYNRPELDRLLDTRREQQPDRWGNVLELAETFHVSGKFMAHTLDAYGILHLDTDTRTI 188
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BLAST of mRNA_P-wetherbeei_contig1213.2.1 vs. uniprot
Match: A0A1E4FR57_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FR57_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.350e-15
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1 
Query:   43 RKGKNFITRAEALTPVIHMLGYKVIWSPKVPDDIFAYTNFDDRRVILAKNLRSRLDFPESFQALVHATLAHELGHIRMHASAALRGKRELR-WENEAYSYSYAFLVPYKELMNEPECRILRAGLLQDQETLWKNVLRLAEVYRVSGAFMAIVLQRYGVIKFDHWNRTI 543
            R+G      A+ +   I    +++  +  +   +    + + R V +  + R RL  PE+  A+++ TLAHELGHIR+HA   +    + R WE EA  Y+  FLVP   LM     R L       Q   W  +LRLA  +RV+G F+A  L+ YG+ + +   R +
Sbjct:   19 RQGVRRWVPAQLVRDAILHCNWRIERATGMESGLLGLCDAEARAVRVPVDFRQRLRVPETATAVMNETLAHELGHIRLHARQMVEQTIKKRVWEREADDYARVFLVPLVTLMTRFPMRKLLEAETPPQR--WAQLLRLACEFRVTGWFLADTLEMYGLARIEPTRRRV 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1213.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1E4G2E7_9BACT1.530e-2935.39Peptidase_M78 domain-containing protein n=1 Tax=ba... [more]
A0A1E4FR57_9BACT2.350e-1531.55Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1213contigP-wetherbeei_contig1213:2314..2856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog945712.CULC22_00174
PFAMsHTH_3,HTH_31,Peptidase_M78
Model size543
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000407
EggNOG OGsCOG2856@1|root,COG2856@2|Bacteria,2GRH0@201174|Actinobacteria,22N7J@1653|Corynebacteriaceae
DescriptionIrrE N-terminal-like domain
Cds size543
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.5566466-CDS-P-wetherbeei_contig1213:2313..28561683185938.5566466-CDS-P-wetherbeei_contig1213:2313..2856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1213 2314..2856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1213.2.1prot_P-wetherbeei_contig1213.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1213 2314..2856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1213.2.1

>prot_P-wetherbeei_contig1213.2.1 ID=prot_P-wetherbeei_contig1213.2.1|Name=mRNA_P-wetherbeei_contig1213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MSRDCQGLIDQLAARKGKNFITRAEALTPVIHMLGYKVIWSPKVPDDIFA
YTNFDDRRVILAKNLRSRLDFPESFQALVHATLAHELGHIRMHASAALRG
KRELRWENEAYSYSYAFLVPYKELMNEPECRILRAGLLQDQETLWKNVLR
LAEVYRVSGAFMAIVLQRYGVIKFDHWNRTI
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mRNA from alignment at P-wetherbeei_contig1213:2314..2856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1213.2.1 ID=mRNA_P-wetherbeei_contig1213.2.1|Name=mRNA_P-wetherbeei_contig1213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:2314..2856- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCGCGATTGCCAGGGGCTGATCGATCAGCTGGCAGCTCGCAAGGG
GAAAAATTTTATCACCCGAGCAGAGGCTCTAACTCCGGTGATCCACATGC
TGGGCTACAAAGTCATCTGGAGCCCCAAGGTGCCAGATGACATCTTTGCC
TACACGAACTTCGACGATCGCAGAGTCATTCTCGCCAAGAACCTCCGCAG
CCGCCTGGATTTTCCAGAATCATTTCAAGCGCTCGTCCATGCAACACTTG
CACACGAGCTGGGGCACATCCGTATGCACGCGAGCGCGGCTCTCCGTGGC
AAGCGAGAGCTGCGCTGGGAGAATGAGGCGTATTCCTACAGCTACGCTTT
TCTGGTGCCCTACAAGGAGCTGATGAACGAGCCCGAGTGCCGCATCCTGC
GAGCCGGGCTGCTTCAAGACCAGGAGACCTTATGGAAGAACGTGCTGCGC
CTGGCCGAGGTCTACCGAGTGAGTGGGGCCTTCATGGCCATCGTGCTGCA
GCGCTACGGGGTGATCAAGTTCGACCATTGGAACCGTACGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1213:2314..2856-

>mRNA_P-wetherbeei_contig1213.2.1 ID=mRNA_P-wetherbeei_contig1213.2.1|Name=mRNA_P-wetherbeei_contig1213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:2314..2856- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCGCGATTGCCAGGGGCTGATCGATCAGCTGGCAGCTCGCAAGGG
GAAAAATTTTATCACCCGAGCAGAGGCTCTAACTCCGGTGATCCACATGC
TGGGCTACAAAGTCATCTGGAGCCCCAAGGTGCCAGATGACATCTTTGCC
TACACGAACTTCGACGATCGCAGAGTCATTCTCGCCAAGAACCTCCGCAG
CCGCCTGGATTTTCCAGAATCATTTCAAGCGCTCGTCCATGCAACACTTG
CACACGAGCTGGGGCACATCCGTATGCACGCGAGCGCGGCTCTCCGTGGC
AAGCGAGAGCTGCGCTGGGAGAATGAGGCGTATTCCTACAGCTACGCTTT
TCTGGTGCCCTACAAGGAGCTGATGAACGAGCCCGAGTGCCGCATCCTGC
GAGCCGGGCTGCTTCAAGACCAGGAGACCTTATGGAAGAACGTGCTGCGC
CTGGCCGAGGTCTACCGAGTGAGTGGGGCCTTCATGGCCATCGTGCTGCA
GCGCTACGGGGTGATCAAGTTCGACCATTGGAACCGTACGATC
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